José L McFaline-Figueroa (Jos L McFaline-Figueroa, Jose L McFaline-Figueroa)

ORCID

Publication Activity (10 Years)

Years Active: 2018-2024
Publications (10 Years): 12

Top Venues

Nature biotechnology

Science (New York, N.Y.)

bioRxiv : the preprint server for biology

Nature genetics

Massachusetts Institute of Technology (PHD)

This page only lists publications with an associated author ORCID identifier.

Education History

Massachusetts Institute of Technology Sep 06 2008 - Apr 16 2014

United States

PHD :: Department of Biology

University of Puerto Rico at Mayagüez Aug 01 2001 - Jun 01 2006

Puerto Rico

BSC :: Department of Chemistry

Publications

Siyu He, Yinuo Jin, Achille Nazaret, Lingting Shi, Xueer Chen, Sham Rampersaud, Bahawar S Dhillon, Izabella Valdez, Lauren E Friend, Joy Linyue Fan, Cameron Y Park, Rachel L Mintz, Yeh-Hsing Lao, David Carrera, Kaylee W Fang, Kaleem Mehdi, Madeline Rohde, José L McFaline-Figueroa, David Blei, Kam W Leong, Alexander Y Rudensky, George Plitas, Elham Azizi
Starfysh integrates spatial transcriptomic and histologic data to reveal heterogeneous tumor-immune hubs. Nature biotechnology (2024)
Siyu He, Yinuo Jin, Achille Nazaret, Lingting Shi, Xueer Chen, Sham Rampersaud, Bahawar S Dhillon, Izabella Valdez, Lauren E Friend, Joy Linyue Fan, Cameron Y Park, Rachel L Mintz, Yeh-Hsing Lao, David Carrera, Kaylee W Fang, Kaleem Mehdi, Madeline Rohde, José L McFaline-Figueroa, David Blei, Kam W Leong, Alexander Y Rudensky, George Plitas, Elham Azizi
Starfysh integrates spatial transcriptomic and histologic data to reveal heterogeneous tumor-immune hubs. Nature biotechnology (2024)
Siyu He, Yinuo Jin, Achille Nazaret, Lingting Shi, Xueer Chen, Sham Rampersaud, Bahawar S Dhillon, Izabella Valdez, Lauren E Friend, Joy Linyue Fan, Cameron Y Park, Rachel L Mintz, Yeh-Hsing Lao, David Carrera, Kaylee W Fang, Kaleem Mehdi, Madeline Rohde, José L McFaline-Figueroa, David Blei, Kam W Leong, Alexander Y Rudensky, George Plitas, Elham Azizi
Starfysh integrates spatial transcriptomic and histologic data to reveal heterogeneous tumor-immune hubs. Nature biotechnology (2024)
José L McFaline-Figueroa, Sanjay Srivatsan, Andrew J Hill, Molly Gasperini, Dana L Jackson, Lauren M Saunders, Silvia Domcke, Samuel G Regalado, Paul Lazarchuck, Sarai Alvarez, Raymond J Monnat, Jay Shendure, Cole Trapnell
Multiplex single-cell chemical genomics reveals the kinase dependence of the response to targeted therapy. bioRxiv : the preprint server for biology (2023)
Gregory T Booth, Riza M Daza, Sanjay R Srivatsan, José L McFaline-Figueroa, Rula Green Gladden, Scott N Furlan, Jay Shendure, Cole Trapnell
High-Capacity Sample Multiplexing for Single Cell Chromatin Accessibility Profiling. bioRxiv : the preprint server for biology (2023)
Mohammad Lotfollahi, Anna Klimovskaia Susmelj, Carlo de Donno, Leon Hetzel, Yuge Ji, Ignacio L Ibarra, Sanjay R Srivatsan, Mohsen Naghipourfar, Riza M Daza, Beth Martin, Jay Shendure, José L McFaline-Figueroa, Pierre Boyeau, F Alexander Wolf, Nafissa Yakubova, Stephan Günnemann, Cole Trapnell, David Lopez-Paz, Fabian Joachim Theis
Predicting cellular responses to complex perturbations in high-throughput screens. Molecular systems biology (2023)
Hyeon-Jin Kim, Gregory T Booth, Lauren M Saunders, Sanjay Srivatsan, José L McFaline-Figueroa, Cole Trapnell
Nuclear oligo hashing improves differential analysis of single-cell RNA-seq. Nature communications 13 (1) (2022)
Nelly M Cruz, Raghava Reddy, José L McFaline-Figueroa, Christine Tran, Hongxia Fu, Benjamin S Freedman
Modelling ciliopathy phenotypes in human tissues derived from pluripotent stem cells with genetically ablated cilia. Nature biomedical engineering 6 (4) (2022)
Sanjay R Srivatsan, José L McFaline-Figueroa, Vijay Ramani, Lauren M Saunders, Junyue Cao, Jonathan S Packer, Hannah A Pliner, Dana L Jackson, Riza M Daza, Lena Christiansen, Fan Zhang, Frank Steemers, Jay Shendure, Cole Trapnell
Massively multiplex chemical transcriptomics at single-cell resolution. Science (New York, N.Y.) 367 (6473) (2019)
Ken Jean-Baptiste, José L McFaline-Figueroa, Cristina M Alexandre, Michael W Dorrity, Lauren M Saunders, Kerry L Bubb, Cole Trapnell, Stanley Fields, Christine Queitsch, Josh T Cuperus
Dynamics of Gene Expression in Single Root Cells of Arabidopsis thaliana. The Plant cell 31 (5) (2019)
José L McFaline-Figueroa, Andrew J Hill, Xiaojie Qiu, Dana Jackson, Jay Shendure, Cole Trapnell
A pooled single-cell genetic screen identifies regulatory checkpoints in the continuum of the epithelial-to-mesenchymal transition. Nature genetics 51 (9) (2019)
Junyue Cao, Darren A Cusanovich, Vijay Ramani, Delasa Aghamirzaie, Hannah A Pliner, Andrew J Hill, Riza M Daza, José L McFaline-Figueroa, Jonathan S Packer, Lena Christiansen, Frank J Steemers, Andrew C Adey, Cole Trapnell, Jay Shendure
Joint profiling of chromatin accessibility and gene expression in thousands of single cells. Science (New York, N.Y.) 361 (6409) (2018)

José L McFaline-Figueroa.css-eqlu8i{font-size:small;padding-left:4px;} (Jos L McFaline-Figueroa, Jose L McFaline-Figueroa)

Publication Activity (10 Years)

Top Topics

Top Venues

José L McFaline-Figueroa (Jos L McFaline-Figueroa, Jose L McFaline-Figueroa)