Vijay Ramani

Publication Activity (10 Years)

Years Active: 2016-2024
Publications (10 Years): 25

Top Topics

African American

Histone Deacetylase

Silver Nanoparticles

Gene Expression

Top Venues

Nature genetics

Genes & development

Science (New York, N.Y.)

Nature protocols

This page only lists publications with an associated author ORCID identifier.

Publications

Arjun Scott Nanda, Ke Wu, Iryna Irkliyenko, Brian Woo, Megan S Ostrowski, Andrew S Clugston, Leanne C Sayles, Lingru Xu, Ansuman T Satpathy, Hao G Nguyen, E Alejandro Sweet-Cordero, Hani Goodarzi, Sivakanthan Kasinathan, Vijay Ramani
Direct transposition of native DNA for sensitive multimodal single-molecule sequencing. Nature genetics (2024)
Arjun Scott Nanda, Ke Wu, Iryna Irkliyenko, Brian Woo, Megan S Ostrowski, Andrew S Clugston, Leanne C Sayles, Lingru Xu, Ansuman T Satpathy, Hao G Nguyen, E Alejandro Sweet-Cordero, Hani Goodarzi, Sivakanthan Kasinathan, Vijay Ramani
Direct transposition of native DNA for sensitive multimodal single-molecule sequencing. Nature genetics 56 (6) (2024)
Arjun Scott Nanda, Ke Wu, Iryna Irkliyenko, Brian Woo, Megan S Ostrowski, Andrew S Clugston, Leanne C Sayles, Lingru Xu, Ansuman T Satpathy, Hao G Nguyen, E Alejandro Sweet-Cordero, Hani Goodarzi, Sivakanthan Kasinathan, Vijay Ramani
Direct transposition of native DNA for sensitive multimodal single-molecule sequencing. Nature genetics 56 (6) (2024)
Brian W Freie, Patrick A Carroll, Barbara J Varnum-Finney, Erin L Ramsey, Vijay Ramani, Irwin D Bernstein, Robert N Eisenman
A germline point mutation in the MYC-FBW7 phosphodegron initiates hematopoietic malignancies. Genes & development (2024)
Arjun Scott Nanda, Ke Wu, Iryna Irkliyenko, Brian Woo, Megan S Ostrowski, Andrew S Clugston, Leanne C Sayles, Lingru Xu, Ansuman T Satpathy, Hao G Nguyen, E Alejandro Sweet-Cordero, Hani Goodarzi, Sivakanthan Kasinathan, Vijay Ramani
Direct transposition of native DNA for sensitive multimodal single-molecule sequencing. Nature genetics 56 (6) (2024)
Arjun Scott Nanda, Ke Wu, Iryna Irkliyenko, Brian Woo, Megan S Ostrowski, Andrew S Clugston, Leanne C Sayles, Lingru Xu, Ansuman T Satpathy, Hao G Nguyen, E Alejandro Sweet-Cordero, Hani Goodarzi, Sivakanthan Kasinathan, Vijay Ramani
Direct transposition of native DNA for sensitive multimodal single-molecule sequencing. Nature genetics (2024)
Brian W Freie, Patrick A Carroll, Barbara J Varnum-Finney, Erin L Ramsey, Vijay Ramani, Irwin D Bernstein, Robert N Eisenman
A germline point mutation in the MYC-FBW7 phosphodegron initiates hematopoietic malignancies. Genes & development 38 (5-6) (2024)
Arjun Scott Nanda, Ke Wu, Iryna Irkliyenko, Brian Woo, Megan S Ostrowski, Andrew S Clugston, Leanne C Sayles, Lingru Xu, Ansuman T Satpathy, Hao G Nguyen, E Alejandro Sweet-Cordero, Hani Goodarzi, Sivakanthan Kasinathan, Vijay Ramani
Direct transposition of native DNA for sensitive multimodal single-molecule sequencing. Nature genetics 56 (6) (2024)
Brian W Freie, Patrick A Carroll, Barbara J Varnum-Finney, Erin L Ramsey, Vijay Ramani, Irwin D Bernstein, Robert N Eisenman
A germline point mutation in the MYC-FBW7 phosphodegron initiates hematopoietic malignancies. Genes & development 38 (5-6) (2024)
Arjun Scott Nanda, Ke Wu, Iryna Irkliyenko, Brian Woo, Megan S Ostrowski, Andrew S Clugston, Leanne C Sayles, Lingru Xu, Ansuman T Satpathy, Hao G Nguyen, E Alejandro Sweet-Cordero, Hani Goodarzi, Sivakanthan Kasinathan, Vijay Ramani
Direct transposition of native DNA for sensitive multimodal single-molecule sequencing. Nature genetics (2024)
Brian W Freie, Patrick A Carroll, Barbara J Varnum-Finney, Erin L Ramsey, Vijay Ramani, Irwin D Bernstein, Robert N Eisenman
A germline point mutation in the MYC-FBW7 phosphodegron initiates hematopoietic malignancies. Genes & development 38 (5-6) (2024)
Brian W Freie, Patrick A Carroll, Barbara J Varnum-Finney, Erin L Ramsey, Vijay Ramani, Irwin D Bernstein, Robert N Eisenman
A germline point mutation in the MYC-FBW7 phosphodegron initiates hematopoietic malignancies. Genes & development 38 (5-6) (2024)
Brian W Freie, Patrick A Carroll, Barbara J Varnum-Finney, Erin L Ramsey, Vijay Ramani, Irwin D Bernstein, Robert N Eisenman
A germline point mutation in the MYC-FBW7 phosphodegron initiates hematopoietic malignancies. Genes & development (2024)
Brian W Freie, Patrick A Carroll, Barbara J Varnum-Finney, Erin L Ramsey, Vijay Ramani, Irwin D Bernstein, Robert N Eisenman
A germline point mutation in the MYC-FBW7 phosphodegron initiates hematopoietic malignancies. Genes & development 38 (5-6) (2024)
Brian W Freie, Patrick A Carroll, Barbara J Varnum-Finney, Erin L Ramsey, Vijay Ramani, Irwin D Bernstein, Robert N Eisenman
A germline point mutation in the MYC-FBW7 phosphodegron initiates hematopoietic malignancies. Genes & development 38 (5-6) (2024)
Arjun Scott Nanda, Ke Wu, Iryna Irkliyenko, Brian Woo, Megan S Ostrowski, Andrew S Clugston, Leanne C Sayles, Lingru Xu, Ansuman T Satpathy, Hao G Nguyen, E Alejandro Sweet-Cordero, Hani Goodarzi, Sivakanthan Kasinathan, Vijay Ramani
Direct transposition of native DNA for sensitive multimodal single-molecule sequencing. Nature genetics 56 (6) (2024)
Brian W Freie, Patrick A Carroll, Barbara J Varnum-Finney, Vijay Ramani, Irwin D Bernstein, Robert N Eisenman
A Germline Point Mutation in the MYC-FBW7 Phosphodegron Initiates Hematopoietic Malignancies. bioRxiv : the preprint server for biology (2023)
Nour J Abdulhay, Laura J Hsieh, Colin P McNally, Megan S Ostrowski, Camille M Moore, Mythili Ketavarapu, Sivakanthan Kasinathan, Arjun Scott Nanda, Ke Wu, Un Seng Chio, Ziling Zhou, Hani Goodarzi, Geeta J Narlikar, Vijay Ramani
Nucleosome density shapes kilobase-scale regulation by a mammalian chromatin remodeler. Nature structural & molecular biology (2023)
Patrick A Carroll, Brian W Freie, Pei Feng Cheng, Sivakanthan Kasinathan, Haiwei Gu, Theresa Hedrich, James A Dowdle, Vivek Venkataramani, Vijay Ramani, Xiaoying Wu, Daniel Raftery, Jay Shendure, Donald E Ayer, Charles H Muller, Robert N Eisenman
The glucose-sensing transcription factor MLX balances metabolism and stress to suppress apoptosis and maintain spermatogenesis. PLoS biology 19 (10) (2021)
Nour J Abdulhay, Colin P McNally, Laura J Hsieh, Sivakanthan Kasinathan, Aidan Keith, Laurel S Estes, Mehran Karimzadeh, Jason G Underwood, Hani Goodarzi, Geeta J Narlikar, Vijay Ramani
Massively multiplex single-molecule oligonucleosome footprinting. eLife 9 (2020)
Sanjay R Srivatsan, José L McFaline-Figueroa, Vijay Ramani, Lauren M Saunders, Junyue Cao, Jonathan S Packer, Hannah A Pliner, Dana L Jackson, Riza M Daza, Lena Christiansen, Fan Zhang, Frank Steemers, Jay Shendure, Cole Trapnell
Massively multiplex chemical transcriptomics at single-cell resolution. Science (New York, N.Y.) 367 (6473) (2019)
Junyue Cao, Darren A Cusanovich, Vijay Ramani, Delasa Aghamirzaie, Hannah A Pliner, Andrew J Hill, Riza M Daza, José L McFaline-Figueroa, Jonathan S Packer, Lena Christiansen, Frank J Steemers, Andrew C Adey, Cole Trapnell, Jay Shendure
Joint profiling of chromatin accessibility and gene expression in thousands of single cells. Science (New York, N.Y.) 361 (6409) (2018)
Vijay Ramani, Xinxian Deng, Ruolan Qiu, Kevin L Gunderson, Frank J Steemers, Christine M Disteche, William Stafford Noble, Zhijun Duan, Jay Shendure
Massively multiplex single-cell Hi-C. Nature methods 14 (3) (2017)
Junyue Cao, Jonathan S Packer, Vijay Ramani, Darren A Cusanovich, Chau Huynh, Riza Daza, Xiaojie Qiu, Choli Lee, Scott N Furlan, Frank J Steemers, Andrew C Adey, Robert H Waterston, Cole Trapnell, Jay Shendure
Comprehensive single-cell transcriptional profiling of a multicellular organism. Science (New York, N.Y.) 357 (6352) (2017)
Vijay Ramani, Darren A Cusanovich, Ronald J Hause, Wenxiu Ma, Ruolan Qiu, Xinxian Deng, C Anthony Blau, Christine M Disteche, William S Noble, Jay Shendure, Zhijun Duan
Mapping 3D genome architecture through in situ DNase Hi-C. Nature protocols 11 (11) (2016)