Peng Yin

ORCID

Publication Activity (10 Years)

Years Active: 2017-2024
Publications (10 Years): 46

Top Venues

Nature methods

Nature nanotechnology

Nature communications

bioRxiv : the preprint server for biology

Harvard Medical School

Duke University (PHD)

This page only lists publications with an associated author ORCID identifier.

Affiliation History

Harvard Medical School Jan 01 2010

United States

Professor :: Systems Biology

Education History

Duke University Sep 01 2000 - May 15 2005

United States

PHD :: Computer Science

Publications

Johannes Stein, Maria Ericsson, Michel Nofal, Lorenzo Magni, Sarah Aufmkolk, Ryan B McMillan, Laura Breimann, Conor P Herlihy, S Dean Lee, Andréa Willemin, Jens Wohlmann, Laura Arguedas-Jimenez, Peng Yin, Ana Pombo, George M Church, Chao-Ting Wu
Cryosectioning-enabled super-resolution microscopy for studying nuclear architecture at the single protein level. bioRxiv : the preprint server for biology (2024)
Johannes Stein, Maria Ericsson, Michel Nofal, Lorenzo Magni, Sarah Aufmkolk, Ryan B McMillan, Laura Breimann, Conor P Herlihy, S Dean Lee, Andréa Willemin, Jens Wohlmann, Laura Arguedas-Jimenez, Peng Yin, Ana Pombo, George M Church, Chao-Ting Wu
Cryosectioning-enabled super-resolution microscopy for studying nuclear architecture at the single protein level. bioRxiv : the preprint server for biology (2024)
Sungwook Woo, Sinem K Saka, Feng Xuan, Peng Yin
Molecular robotic agents that survey molecular landscapes for information retrieval. Nature communications 15 (1) (2024)
Johannes Stein, Maria Ericsson, Michel Nofal, Lorenzo Magni, Sarah Aufmkolk, Ryan B McMillan, Laura Breimann, Conor P Herlihy, S Dean Lee, Andréa Willemin, Jens Wohlmann, Laura Arguedas-Jimenez, Peng Yin, Ana Pombo, George M Church, Chao-Ting Wu
Cryosectioning-enabled super-resolution microscopy for studying nuclear architecture at the single protein level. bioRxiv : the preprint server for biology (2024)
Xiao-Kang Lun, Kuanwei Sheng, Xueyang Yu, Ching Yeung Lam, Gokul Gowri, Matthew Serrata, Yunhao Zhai, Hanquan Su, Jingyi Luan, Youngeun Kim, Donald E Ingber, Hartland Warren Jackson, Micheal B Yaffe, Peng Yin
Signal amplification by cyclic extension enables high-sensitivity single-cell mass cytometry. Nature biotechnology (2024)
Sungwook Woo, Sinem K Saka, Feng Xuan, Peng Yin
Molecular robotic agents that survey molecular landscapes for information retrieval. Nature communications 15 (1) (2024)
Sungwook Woo, Sinem K Saka, Feng Xuan, Peng Yin
Molecular robotic agents that survey molecular landscapes for information retrieval. Nature communications 15 (1) (2024)
Johannes Stein, Maria Ericsson, Michel Nofal, Lorenzo Magni, Sarah Aufmkolk, Ryan B McMillan, Laura Breimann, Conor P Herlihy, S Dean Lee, Andréa Willemin, Jens Wohlmann, Laura Arguedas-Jimenez, Peng Yin, Ana Pombo, George M Church, Chao-Ting Wu
Cryosectioning-enabled super-resolution microscopy for studying nuclear architecture at the single protein level. bioRxiv : the preprint server for biology (2024)
Sungwook Woo, Sinem K Saka, Feng Xuan, Peng Yin
Molecular robotic agents that survey molecular landscapes for information retrieval. Nature communications 15 (1) (2024)
Fan Hong, Jocelyn Y Kishi, Ryan N Delgado, Jiyoun Jeong, Sinem K Saka, Hanquan Su, Constance L Cepko, Peng Yin
Thermal-plex: fluidic-free, rapid sequential multiplexed imaging with DNA-encoded thermal channels. Nature methods 21 (2) (2023)
Fan Hong, Jocelyn Y Kishi, Ryan N Delgado, Jiyoun Jeong, Sinem K Saka, Hanquan Su, Constance L Cepko, Peng Yin
Thermal-plex: fluidic-free, rapid sequential multiplexed imaging with DNA-encoded thermal channels. Nature methods (2023)
Christopher M Wintersinger, Dionis Minev, Anastasia Ershova, Hiroshi M Sasaki, Gokul Gowri, Jonathan F Berengut, F Eduardo Corea-Dilbert, Peng Yin, William M Shih
Author Correction: Multi-micron crisscross structures grown from DNA-origami slats. Nature nanotechnology (2023)
Fan Hong, Jocelyn Y Kishi, Ryan N Delgado, Jiyoun Jeong, Sinem K Saka, Hanquan Su, Constance L Cepko, Peng Yin
Thermal-plex: fluidic-free, rapid sequential multiplexed imaging with DNA-encoded thermal channels. Nature methods 21 (2) (2023)
Fan Hong, Jocelyn Y Kishi, Ryan N Delgado, Jiyoun Jeong, Sinem K Saka, Hanquan Su, Constance L Cepko, Peng Yin
Thermal-plex: fluidic-free, rapid sequential multiplexed imaging with DNA-encoded thermal channels. Nature methods 21 (2) (2023)
Fan Hong, Jocelyn Y Kishi, Ryan N Delgado, Jiyoun Jeong, Sinem K Saka, Hanquan Su, Constance L Cepko, Peng Yin
Thermal-plex: fluidic-free, rapid sequential multiplexed imaging with DNA-encoded thermal channels. Nature methods (2023)
Fan Hong, Jocelyn Y Kishi, Ryan N Delgado, Jiyoun Jeong, Sinem K Saka, Hanquan Su, Constance L Cepko, Peng Yin
Thermal-plex: fluidic-free, rapid sequential multiplexed imaging with DNA-encoded thermal channels. Nature methods 21 (2) (2023)
Ziye Xu, Yuting Wang, Kuanwei Sheng, Raoul Rosenthal, Nan Liu, Xiaoting Hua, Tianyu Zhang, Jiaye Chen, Mengdi Song, Yuexiao Lv, Shunji Zhang, Yingjuan Huang, Zhaolun Wang, Ting Cao, Yifei Shen, Yan Jiang, Yunsong Yu, Yu Chen, Guoji Guo, Peng Yin, David A Weitz, Yongcheng Wang
Droplet-based high-throughput single microbe RNA sequencing by smRandom-seq. Nature communications 14 (1) (2023)
Christopher M Wintersinger, Dionis Minev, Anastasia Ershova, Hiroshi M Sasaki, Gokul Gowri, Jonathan F Berengut, F Eduardo Corea-Dilbert, Peng Yin, William M Shih
Multi-micron crisscross structures grown from DNA-origami slats. Nature nanotechnology 18 (3) (2022)
Christopher M Wintersinger, Dionis Minev, Anastasia Ershova, Hiroshi M Sasaki, Gokul Gowri, Jonathan F Berengut, F Eduardo Corea-Dilbert, Peng Yin, William M Shih
Multi-micron crisscross structures grown from DNA-origami slats. Nature nanotechnology (2022)
Christopher M Wintersinger, Dionis Minev, Anastasia Ershova, Hiroshi M Sasaki, Gokul Gowri, Jonathan F Berengut, F Eduardo Corea-Dilbert, Peng Yin, William M Shih
Multi-micron crisscross structures grown from DNA-origami slats. Nature nanotechnology 18 (3) (2022)
Di Liu, François A Thélot, Joseph A Piccirilli, Maofu Liao, Peng Yin
Sub-3-Å cryo-EM structure of RNA enabled by engineered homomeric self-assembly. Nature methods 19 (5) (2022)
Christopher M Wintersinger, Dionis Minev, Anastasia Ershova, Hiroshi M Sasaki, Gokul Gowri, Jonathan F Berengut, F Eduardo Corea-Dilbert, Peng Yin, William M Shih
Multi-micron crisscross structures grown from DNA-origami slats. Nature nanotechnology 18 (3) (2022)
Christopher M Wintersinger, Dionis Minev, Anastasia Ershova, Hiroshi M Sasaki, Gokul Gowri, Jonathan F Berengut, F Eduardo Corea-Dilbert, Peng Yin, William M Shih
Multi-micron crisscross structures grown from DNA-origami slats. Nature nanotechnology 18 (3) (2022)
Ardjan J van der Linden, Pascal A Pieters, Mart W Bartelds, Bryan L Nathalia, Peng Yin, Wilhelm T S Huck, Jongmin Kim, Tom F A de Greef
DNA Input Classification by a Riboregulator-Based Cell-Free Perceptron. ACS synthetic biology 11 (4) (2022)
Christopher M Wintersinger, Dionis Minev, Anastasia Ershova, Hiroshi M Sasaki, Gokul Gowri, Jonathan F Berengut, F Eduardo Corea-Dilbert, Peng Yin, William M Shih
Multi-micron crisscross structures grown from DNA-origami slats. Nature nanotechnology (2022)
Jocelyn Y Kishi, Ninning Liu, Emma R West, Kuanwei Sheng, Jack J Jordanides, Matthew Serrata, Constance L Cepko, Sinem K Saka, Peng Yin
Light-Seq: light-directed in situ barcoding of biomolecules in fixed cells and tissues for spatially indexed sequencing. Nature methods 19 (11) (2022)
Pascal A Pieters, Bryan L Nathalia, Ardjan J van der Linden, Peng Yin, Jongmin Kim, Wilhelm T S Huck, Tom F A de Greef
Cell-Free Characterization of Coherent Feed-Forward Loop-Based Synthetic Genetic Circuits. ACS synthetic biology 10 (6) (2021)
Divita Mathur, Anirban Samanta, Mario G Ancona, Sebastian A Diaz, Youngchan Kim, Joseph S Melinger, Ellen R Goldman, John Paul Sadowski, Luvena L Ong, Peng Yin, Igor L Medintz
Understanding Förster Resonance Energy Transfer in the Sheet Regime with DNA Brick-Based Dye Networks. ACS nano 15 (10) (2021)
Javier Antonio Alfaro, Peggy Bohländer, Mingjie Dai, Mike Filius, Cecil J Howard, Xander F van Kooten, Shilo Ohayon, Adam Pomorski, Sonja Schmid, Aleksei Aksimentiev, Eric V Anslyn, Georges Bedran, Chan Cao, Mauro Chinappi, Etienne Coyaud, Cees Dekker, Gunnar Dittmar, Nicholas Drachman, Rienk Eelkema, David Goodlett, Sébastien Hentz, Umesh Kalathiya, Michael P Snyder, Ryan T Kelly, Zvi Kelman, Sung Hyun Kim, Bernhard Kuster, David Rodriguez-Larrea, Stuart Lindsay, Giovanni Maglia, Edward M Marcotte, John P Marino, Christophe D Masselon, Michael Mayer, Patroklos Samaras, Kumar Sarthak, Lusia Sepiashvili, Derek Stein, Meni Wanunu, Mathias Wilhelm, Peng Yin, Amit Meller, Chirlmin Joo
The emerging landscape of single-molecule protein sequencing technologies. Nature methods 18 (6) (2021)
Jie Shen, Wei Sun, Di Liu, Thomas Schaus, Peng Yin
Three-dimensional nanolithography guided by DNA modular epitaxy. Nature materials 20 (5) (2021)
Feng Zhou, Wei Sun, Chen Zhang, Jie Shen, Peng Yin, Haitao Liu
3D Freestanding DNA Nanostructure Hybrid as a Low-Density High-Strength Material. ACS nano 14 (6) (2020)
Wei Sun, Jie Shen, Zhao Zhao, Noel Arellano, Charles Rettner, Jianshi Tang, Tianyang Cao, Zhiyu Zhou, Toan Ta, Jason K Streit, Jeffrey A Fagan, Thomas Schaus, Ming Zheng, Shu-Jen Han, William M Shih, Hareem T Maune, Peng Yin
Precise pitch-scaling of carbon nanotube arrays within three-dimensional DNA nanotrenches. Science (New York, N.Y.) 368 (6493) (2020)
Fan Xu, Donghan Ma, Kathryn P MacPherson, Sheng Liu, Ye Bu, Yu Wang, Yu Tang, Cheng Bi, Tim Kwok, Alexander A Chubykin, Peng Yin, Sarah Calve, Gary E Landreth, Fang Huang
Three-dimensional nanoscopy of whole cells and tissues with in situ point spread function retrieval. Nature methods 17 (5) (2020)
Shelley F J Wickham, Alexander Auer, Jianghong Min, Nandhini Ponnuswamy, Johannes B Woehrstein, Florian Schueder, Maximilian T Strauss, Jörg Schnitzbauer, Bhavik Nathwani, Zhao Zhao, Steven D Perrault, Jaeseung Hahn, Seungwoo Lee, Maartje M Bastings, Sarah W Helmig, Anne Louise Kodal, Peng Yin, Ralf Jungmann, William M Shih
Complex multicomponent patterns rendered on a 3D DNA-barrel pegboard. Nature communications 11 (1) (2020)
Sinem K Saka, Yu Wang, Jocelyn Y Kishi, Allen Zhu, Yitian Zeng, Wenxin Xie, Koray Kirli, Clarence Yapp, Marcelo Cicconet, Brian J Beliveau, Sylvain W Lapan, Siyuan Yin, Millicent Lin, Edward S Boyden, Pascal S Kaeser, German Pihan, George M Church, Peng Yin
Immuno-SABER enables highly multiplexed and amplified protein imaging in tissues. Nature biotechnology 37 (9) (2019)
Jocelyn Y Kishi, Sylvain W Lapan, Brian J Beliveau, Emma R West, Allen Zhu, Hiroshi M Sasaki, Sinem K Saka, Yu Wang, Constance L Cepko, Peng Yin
SABER amplifies FISH: enhanced multiplexed imaging of RNA and DNA in cells and tissues. Nature methods 16 (6) (2019)
Mike Jin, Nicolas Garreau de Loubresse, Youngeun Kim, Jongmin Kim, Peng Yin
Programmable CRISPR-Cas Repression, Activation, and Computation with Sequence-Independent Targets and Triggers. ACS synthetic biology 8 (7) (2019)
Jongmin Kim, Yu Zhou, Paul D Carlson, Mario Teichmann, Soma Chaudhary, Friedrich C Simmel, Pamela A Silver, James J Collins, Julius B Lucks, Peng Yin, Alexander A Green
De novo-designed translation-repressing riboregulators for multi-input cellular logic. Nature chemical biology 15 (12) (2019)
Orsolya K Wade, Johannes B Woehrstein, Philipp C Nickels, Sebastian Strauss, Florian Stehr, Johannes Stein, Florian Schueder, Maximilian T Strauss, Mahipal Ganji, Joerg Schnitzbauer, Heinrich Grabmayr, Peng Yin, Petra Schwille, Ralf Jungmann
124-Color Super-resolution Imaging by Engineering DNA-PAINT Blinking Kinetics. Nano letters 19 (4) (2019)
Ninning Liu, Mingjie Dai, Sinem K Saka, Peng Yin
Super-resolution labelling with Action-PAINT. Nature chemistry 11 (11) (2019)
Dongran Han, Xiaodong Qi, Cameron A Myhrvold, Bei Wang, Mingjie Dai, Shuoxing Jiang, Maxwell Bates, Yan Liu, Byoungkwon An, Fei Zhang, Hao Yan, Peng Yin
Single-stranded DNA and RNA origami. Science (New York, N.Y.) 358 (6369) (2018)
Tong Lin, Jun Yan, Luvena L Ong, Joanna Robaszewski, Hoang D Lu, Yongli Mi, Peng Yin, Bryan Wei
Hierarchical Assembly of DNA Nanostructures Based on Four-Way Toehold-Mediated Strand Displacement. Nano letters 18 (8) (2018)
Xiaodong Qi, Fei Zhang, Zhaoming Su, Shuoxing Jiang, Dongran Han, Baoquan Ding, Yan Liu, Wah Chiu, Peng Yin, Hao Yan
Programming molecular topologies from single-stranded nucleic acids. Nature communications 9 (1) (2018)
Jongmin Kim, Peng Yin, Alexander A Green
Ribocomputing: Cellular Logic Computation Using RNA Devices. Biochemistry 57 (6) (2017)
Jocelyn Y Kishi, Thomas E Schaus, Nikhil Gopalkrishnan, Feng Xuan, Peng Yin
Programmable autonomous synthesis of single-stranded DNA. Nature chemistry 10 (2) (2017)
Yu Wang, Johannes B Woehrstein, Noah Donoghue, Mingjie Dai, Maier S Avendaño, Ron C J Schackmann, Jason J Zoeller, Shan Shan H Wang, Paul W Tillberg, Demian Park, Sylvain W Lapan, Edward S Boyden, Joan S Brugge, Pascal S Kaeser, George M Church, Sarit S Agasti, Ralf Jungmann, Peng Yin
Rapid Sequential in Situ Multiplexing with DNA Exchange Imaging in Neuronal Cells and Tissues. Nano letters 17 (10) (2017)

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Publication Activity (10 Years)

Top Topics

Top Venues

Peng Yin