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Gianni Liti

ORCID

Publication Activity (10 Years)

Years Active: 2017-2023
Publications (10 Years): 18

Top Venues

PLoS genetics

Genome research

Nature ecology & evolution

Nature communications

Institute for Research on Cancer and Ageing of Nice (IRCAN)

This page only lists publications with an associated author ORCID identifier.

Affiliation History

Institute for Research on Cancer and Ageing of Nice (IRCAN) Sep 1o 2011

France

Principal investigator :: CNRS UMR 7284 - INSERM U1081 - Université de Nice Sophia Antipolis

Publications

Samuel O'Donnell, Jia-Xing Yue, Omar Abou Saada, Nicolas Agier, Claudia Caradec, Thomas Cokelaer, Matteo De Chiara, Stéphane Delmas, Fabien Dutreux, Téo Fournier, Anne Friedrich, Etienne Kornobis, Jing Li, Zepu Miao, Lorenzo Tattini, Joseph Schacherer, Gianni Liti, Gilles Fischer
Telomere-to-telomere assemblies of 142 strains characterize the genome structural landscape in Saccharomyces cerevisiae. Nature genetics (2023)
Erik P Garrison, Andrea Guarracino, Simon Heumos, Flavia Villani, Zhigui Bao, Lorenzo Tattini, Jörg Hagmann, Sebastian Vorbrugg, Santiago Marco-Sola, Christian Kubica, David George Ashbrook, Kaisa Thorell, Rachel L Rusholme-Pilcher, Gianni Liti, Emilio Rudbeck, Sven Nahnsen, Zuyu Yang, Mwaniki N Moses, Franklin L Nobrega, Yi Wu, Hao Chen, Joep de Ligt, Peter H Sudmant, Nicole Soranzo, Vincenza Colonna, Robert W Williams, Pjotr Prins
Building pangenome graphs. bioRxiv : the preprint server for biology (2023)
Jing Li, Simon Stenberg, Jia-Xing Yue, Ekaterina Mikhalev, Dawn Thompson, Jonas Warringer, Gianni Liti
Genome instability footprint under rapamycin and hydroxyurea treatments. PLoS genetics 19 (11) (2023)
Simone Mozzachiodi, Kristoffer Krogerus, Brian Gibson, Alain Nicolas, Gianni Liti
Unlocking the functional potential of polyploid yeasts. Nature communications 13 (1) (2022)
Matteo De Chiara, Benjamin P Barré, Karl Persson, Agurtzane Irizar, Chiara Vischioni, Sakshi Khaiwal, Simon Stenberg, Onyetugo Chioma Amadi, Gašper Žun, Katja Doberšek, Cristian Taccioli, Joseph Schacherer, Uroš Petrovič, Jonas Warringer, Gianni Liti
Domestication reprogrammed the budding yeast life cycle. Nature ecology & evolution 6 (4) (2022)
Leopold Parts, Amandine Batté, Maykel Lopes, Michael W Yuen, Meredith Laver, Bryan-Joseph San Luis, Jia-Xing Yue, Carles Pons, Elise Eray, Patrick Aloy, Gianni Liti, Jolanda van Leeuwen
Natural variants suppress mutations in hundreds of essential genes. Molecular systems biology 17 (5) (2022)
Jing Li, Bertrand Llorente, Gianni Liti, Jia-Xing Yue
RecombineX: A generalized computational framework for automatic high-throughput gamete genotyping and tetrad-based recombination analysis. PLoS genetics 18 (5) (2022)
Simon Stenberg, Jing Li, Arne B Gjuvsland, Karl Persson, Erik Demitz-Helin, Carles González Peña, Jia-Xing Yue, Ciaran Gilchrist, Timmy Ärengård, Payam Ghiaci, Lisa Larsson-Berglund, Martin Zackrisson, Silvana Smits, Johan Hallin, Johanna L Höög, Mikael Molin, Gianni Liti, Stig W Omholt, Jonas Warringer
Genetically controlled mtDNA deletions prevent ROS damage by arresting oxidative phosphorylation. eLife 11 (2022)
Tracy Jiaye Lee, Yu-Ching Liu, Wei-An Liu, Yu-Fei Lin, Hsin-Han Lee, Huei-Mien Ke, Jen-Pan Huang, Mei-Yeh Jade Lu, Chia-Lun Hsieh, Kuo-Fang Chung, Gianni Liti, Isheng Jason Tsai
Extensive sampling of Saccharomyces cerevisiae in Taiwan reveals ecology and evolution of predomesticated lineages. Genome research 32 (5) (2022)
Simone Mozzachiodi, Lorenzo Tattini, Agnes Llored, Agurtzane Irizar, Neža Škofljanc, Melania D'Angiolo, Matteo De Chiara, Benjamin P Barré, Jia-Xing Yue, Angela Lutazi, Sophie Loeillet, Raphaelle Laureau, Souhir Marsit, Simon Stenberg, Benoit Albaud, Karl Persson, Jean-Luc Legras, Sylvie Dequin, Jonas Warringer, Alain Nicolas, Gianni Liti
Aborting meiosis allows recombination in sterile diploid yeast hybrids. Nature communications 12 (1) (2021)
Roberto F Nespolo, Carlos A Villarroel, Christian I Oporto, Sebastián M Tapia, Franco Vega-Macaya, Kamila Urbina, Matteo De Chiara, Simone Mozzachiodi, Ekaterina Mikhalev, Dawn Thompson, Luis F Larrondo, Pablo Saenz-Agudelo, Gianni Liti, Francisco A Cubillos
An Out-of-Patagonia migration explains the worldwide diversity and distribution of Saccharomyces eubayanus lineages. PLoS genetics 16 (5) (2020)
Benjamin P Barré, Johan Hallin, Jia-Xing Yue, Karl Persson, Ekaterina Mikhalev, Agurtzane Irizar, Sylvester Holt, Dawn Thompson, Mikael Molin, Jonas Warringer, Gianni Liti
Intragenic repeat expansion in the cell wall protein gene HPF1 controls yeast chronological aging. Genome research 30 (5) (2020)
Gilles Fischer, Gianni Liti, Bertrand Llorente
The budding yeast life cycle: More complex than anticipated? Yeast (Chichester, England) 38 (1) (2020)
Melania D'Angiolo, Matteo De Chiara, Jia-Xing Yue, Agurtzane Irizar, Simon Stenberg, Karl Persson, Agnès Llored, Benjamin Barré, Joseph Schacherer, Roberto Marangoni, Eric Gilson, Jonas Warringer, Gianni Liti
A yeast living ancestor reveals the origin of genomic introgressions. Nature 587 (7834) (2020)
Hayley R Stoneman, Russell L Wrobel, Michael Place, Michael Graham, David J Krause, Matteo De Chiara, Gianni Liti, Joseph Schacherer, Robert Landick, Audrey P Gasch, Trey K Sato, Chris Todd Hittinger
CRISpy-Pop: A Web Tool for Designing CRISPR/Cas9-Driven Genetic Modifications in Diverse Populations. G3 (Bethesda, Md.) 10 (11) (2020)
Manuel Villalobos-Cid, Francisco Salinas, Eduardo I Kessi-Pérez, Matteo De Chiara, Gianni Liti, Mario Inostroza-Ponta, Claudio Martínez
Comparison of Phylogenetic Tree Topologies for Nitrogen Associated Genes Partially Reconstruct the Evolutionary History of Saccharomyces cerevisiae. Microorganisms 8 (1) (2019)
Jia-Xing Yue, Gianni Liti
Long-read sequencing data analysis for yeasts. Nature protocols 13 (6) (2018)
Haoxuan Liu, Ju Huang, Xiaoguang Sun, Jing Li, Yingwen Hu, Luyao Yu, Gianni Liti, Dacheng Tian, Laurence D Hurst, Sihai Yang
Tetrad analysis in plants and fungi finds large differences in gene conversion rates but no GC bias. Nature ecology & evolution 2 (1) (2017)

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Publication Activity (10 Years)

Top Topics

Top Venues

Gianni Liti