Juan David Ramírez (Juan D Ramírez, J D Ramírez, Juan David Ramirez)

Scopus Author ID ResearcherID Loop profile ORCID

Publication Activity (10 Years)

Years Active: 2016-2024
Publications (10 Years): 100

Top Venues

PLoS neglected tropical diseases

Parasites & vectors

Journal of medical virology

Viruses

Universidad del Rosario

This page only lists publications with an associated author ORCID identifier.

Affiliation History

Universidad del Rosario Feb 10 2014

Colombia

Principal Professor :: Faculty of Natural Sciences and Mathematics

Publications

Plutarco Urbano, Carolina Hernández, Natalia Velásquez-Ortiz, Nathalia Ballesteros, Luisa Páez-Triana, Laura Vega, Vanessa Urrea, Angie Ramírez, Marina Muñoz, Carlos N Ibarra-Cerdeña, Camila González, Juan David Ramírez
Transmission ecology of Trypanosoma cruzi by Rhodnius prolixus (Reduviidae: Triatominae) infesting palm-tree species in the Colombian Orinoco, indicates risks to human populations. PLoS neglected tropical diseases 18 (2) (2024)
Alberto Paniz Mondolfi, Juan David Ramírez
FDA's proposed rule and its regulatory impact on emerging and reemerging neglected tropical diseases in the United States. PLoS neglected tropical diseases 18 (5) (2024)
Jesús Jaimes, Luz Helena Patiño, Giovanny Herrera, Claudia Cruz, Julie Pérez, Camilo A Correa-Cárdenas, Marina Muñoz, Juan David Ramírez
Prokaryotic and eukaryotic skin microbiota modifications triggered by Leishmania infection in localized Cutaneous Leishmaniasis. PLoS neglected tropical diseases 18 (3) (2024)
Jesús Jaimes, Luz Helena Patiño, Giovanny Herrera, Claudia Cruz, Julie Pérez, Camilo A Correa-Cárdenas, Marina Muñoz, Juan David Ramírez
Prokaryotic and eukaryotic skin microbiota modifications triggered by Leishmania infection in localized Cutaneous Leishmaniasis. PLoS neglected tropical diseases 18 (3) (2024)
Alberto Paniz Mondolfi, Juan David Ramírez
FDA's proposed rule and its regulatory impact on emerging and reemerging neglected tropical diseases in the United States. PLoS neglected tropical diseases 18 (5) (2024)
Jesús Jaimes, Luz Helena Patiño, Giovanny Herrera, Claudia Cruz, Julie Pérez, Camilo A Correa-Cárdenas, Marina Muñoz, Juan David Ramírez
Prokaryotic and eukaryotic skin microbiota modifications triggered by Leishmania infection in localized Cutaneous Leishmaniasis. PLoS neglected tropical diseases 18 (3) (2024)
Plutarco Urbano, Carolina Hernández, Natalia Velásquez-Ortiz, Nathalia Ballesteros, Luisa Páez-Triana, Laura Vega, Vanessa Urrea, Angie Ramírez, Marina Muñoz, Carlos N Ibarra-Cerdeña, Camila González, Juan David Ramírez
Transmission ecology of Trypanosoma cruzi by Rhodnius prolixus (Reduviidae: Triatominae) infesting palm-tree species in the Colombian Orinoco, indicates risks to human populations. PLoS neglected tropical diseases 18 (2) (2024)
J V Aya, L C Vega, E Muñoz, M Muñoz, D F López, M P Guzmán, D F Martínez, L B Cruz-Saavedra, A K Castillo, K J Quintero, R R Gónzalez Soltero, M P Cala, Juan David Ramírez
Divergent Gut Microbiota: Archaeal and Bacterial Signatures Unveil Unique Patterns in Colombian Cyclists Compared to Weightlifters and Non-Athletes. Advanced biology (2024)
Plutarco Urbano, Carolina Hernández, Natalia Velásquez-Ortiz, Nathalia Ballesteros, Luisa Páez-Triana, Laura Vega, Vanessa Urrea, Angie Ramírez, Marina Muñoz, Carlos N Ibarra-Cerdeña, Camila González, Juan David Ramírez
Transmission ecology of Trypanosoma cruzi by Rhodnius prolixus (Reduviidae: Triatominae) infesting palm-tree species in the Colombian Orinoco, indicates risks to human populations. PLoS neglected tropical diseases 18 (2) (2024)
Jesús Jaimes, Luz Helena Patiño, Giovanny Herrera, Claudia Cruz, Julie Pérez, Camilo A Correa-Cárdenas, Marina Muñoz, Juan David Ramírez
Prokaryotic and eukaryotic skin microbiota modifications triggered by Leishmania infection in localized Cutaneous Leishmaniasis. PLoS neglected tropical diseases 18 (3) (2024)
Plutarco Urbano, Carolina Hernández, Natalia Velásquez-Ortiz, Nathalia Ballesteros, Luisa Páez-Triana, Laura Vega, Vanessa Urrea, Angie Ramírez, Marina Muñoz, Carlos N Ibarra-Cerdeña, Camila González, Juan David Ramírez
Transmission ecology of Trypanosoma cruzi by Rhodnius prolixus (Reduviidae: Triatominae) infesting palm-tree species in the Colombian Orinoco, indicates risks to human populations. PLoS neglected tropical diseases 18 (2) (2024)
J V Aya, L C Vega, E Muñoz, M Muñoz, D F López, M P Guzmán, D F Martínez, L B Cruz-Saavedra, A K Castillo, K J Quintero, R Gónzalez Soltero, M P Cala, Juan David Ramírez
Divergent Gut Microbiota: Archaeal and Bacterial Signatures Unveil Unique Patterns in Colombian Cyclists Compared to Weightlifters and Non-Athletes. Advanced biology 8 (6) (2024)
Alberto Paniz Mondolfi, Juan David Ramírez
FDA's proposed rule and its regulatory impact on emerging and reemerging neglected tropical diseases in the United States. PLoS neglected tropical diseases 18 (5) (2024)
Plutarco Urbano, Carolina Hernández, Natalia Velásquez-Ortiz, Nathalia Ballesteros, Luisa Páez-Triana, Laura Vega, Vanessa Urrea, Angie Ramírez, Marina Muñoz, Carlos N Ibarra-Cerdeña, Camila González, Juan David Ramírez
Transmission ecology of Trypanosoma cruzi by Rhodnius prolixus (Reduviidae: Triatominae) infesting palm-tree species in the Colombian Orinoco, indicates risks to human populations. PLoS neglected tropical diseases 18 (2) (2024)
J V Aya, L C Vega, E Muñoz, M Muñoz, D F López, M P Guzmán, D F Martínez, L B Cruz-Saavedra, A K Castillo, K J Quintero, R Gónzalez Soltero, M P Cala, Juan David Ramírez
Divergent Gut Microbiota: Archaeal and Bacterial Signatures Unveil Unique Patterns in Colombian Cyclists Compared to Weightlifters and Non-Athletes. Advanced biology 8 (6) (2024)
Theodoro Pérez-Gerdel, Milena Camargo, Mateo Alvarado, Juan David Ramírez
Impact of Intermittent Fasting on the Gut Microbiota: A Systematic Review. Advanced biology (2023)
Luz Helena Patiño, Marina Muñoz, Angie Lorena Ramírez, Nórida Vélez, Patricia Escandón, Claudia Marcela Parra-Girado, Juan David Ramírez
A Landscape of the Genomic Structure of Cryptococcus neoformans in Colombian Isolates. Journal of fungi (Basel, Switzerland) 9 (2) (2023)
Nicolas Luna, Marina Muñoz, Adriana Castillo-Castañeda, Carolina Hernandez, Plutarco Urbano, Maryia Shaban, Alberto Paniz-Mondolfi, Juan David Ramírez
Characterizing the blood microbiota of omnivorous and frugivorous bats (Chiroptera: Phyllostomidae) in Casanare, eastern Colombia. PeerJ 11 (2023)
Luz Helena Patiño, Nathalia Ballesteros, Marina Muñoz, Angie L Ramírez, Nicolas Luna, Sergio Castañeda, Reinaldo Gutierrez-Marin, Jesús A Mendoza-Ibarra, Raúl Rodriguez, Diana Patricia Bohada, Juan David Ramírez, Alberto Paniz Mondolfi
Mu SARS-CoV-2 (B.1.621) variant: A genomic snapshot across the Colombian-Venezuelan border. Journal of medical virology 95 (4) (2023)
Giovanny Herrera, María Carmen Vieira Lista, Luisa Páez-Triana, Antonio Muro, Julio López-Abán, Marina Muñoz, Juan David Ramírez
Examining the gut microbiota from several human-biting tick species in Northwestern Spain. Journal of medical entomology (2023)
Marcela Gómez, David Martínez, Luisa Páez-Triana, Nicolás Luna, Angie Ramírez, Julián Medina, Lissa Cruz-Saavedra, Carolina Hernández, Sergio Castañeda, Ramiro Bohórquez Melo, Luis Alejandro Suarez, Mónica Palma-Cuero, Luz Mila Murcia, Leonel González Páez, Leonardo Estrada Bustos, Manuel Alfonso Medina, Katiuska Ariza Campo, Holmer David Padilla, Alexander Zamora Flórez, Jorge Luis De Las Salas, Marina Muñoz, Juan David Ramírez
Influence of dengue virus serotypes on the abundance of Aedes aegypti insect-specific viruses (ISVs). Journal of virology (2023)
Luz Helena Patiño, Marina Muñoz, Angie Lorena Ramírez, Nórida Vélez, Patricia Escandón, Claudia Marcela Parra-Girado, Juan David Ramírez
A Landscape of the Genomic Structure of Cryptococcus neoformans in Colombian Isolates. Journal of fungi (Basel, Switzerland) 9 (2) (2023)
Luz H Patiño, Susana Guerra, Marina Muñoz, Nicolas Luna, Keith Farrugia, Adriana van de Guchte, Zain Khalil, Ana Silvia Gonzalez-Reiche, Matthew M Hernandez, Radhika Banu, Paras Shrestha, Bernadette Liggayu, Adolfo Firpo Betancourt, David Reich, Carlos Cordon-Cardo, Randy Albrecht, Rebecca Pearl, Viviana Simon, Aria Rooker, Emilia Mia Sordillo, Harm van Bakel, Adolfo García-Sastre, Dusan Bogunovic, Gustavo Palacios, Alberto Paniz Mondolfi, Juan David Ramírez
Phylogenetic landscape of Monkeypox Virus (MPV) during the early outbreak in New York City, 2022. Emerging microbes & infections (2023)
Luz Helena Patiño, Marina Muñoz, Angie Lorena Ramírez, Nórida Vélez, Patricia Escandón, Claudia Marcela Parra-Girado, Juan David Ramírez
A Landscape of the Genomic Structure of Cryptococcus neoformans in Colombian Isolates. Journal of fungi (Basel, Switzerland) 9 (2) (2023)
Sergio Castañeda, Marina Muñoz, Peter J Hotez, Maria Elena Bottazzi, Alberto E Paniz-Mondolfi, Kathryn M Jones, Rojelio Mejia, Cristina Poveda, Juan David Ramírez
Microbiome Alterations Driven by Trypanosoma cruzi Infection in Two Disjunctive Murine Models. Microbiology spectrum (2023)
Matthew M Hernandez, Radhika Banu, Paras Shrestha, Ana S Gonzalez-Reiche, Adriana van de Guchte, Keith Farrugia, Robert Sebra, null null, Melissa Randy Gitman, Michael D Nowak, Carlos Cordon-Cardo, Viviana Simon, Harm van Bakel, Emilia Mia Sordillo, Nicolas Luna, Angie Ramirez, Sergio Andres Castañeda, Luz Helena Patiño, Nathalia Ballesteros, Marina Muñoz, Juan David Ramírez, Alberto E Paniz-Mondolfi
A Robust, Highly Multiplexed Mass Spectrometry Assay to Identify SARS-CoV-2 Variants. Microbiology spectrum 10 (5) (2022)
Alberto Paniz Mondolfi, Susana Guerra, Marina Muñoz, Nicolas Luna, Matthew M Hernandez, Luz H Patino, Jason Reidy, Radhika Banu, Paras Shrestha, Bernadette Liggayu, Audrey Umeaku, Feng Chen, Liyong Cao, Armi Patel, Ayman Hanna, Sunny Li, Andy Look, Nina Pagani, Randy Albrecht, Rebecca Pearl, Adolfo Garcia-Sastre, Dusan Bogunovic, Gustavo Palacios, Lucia Bonnier, Freddy Cera, Heidi Lopez, Yvette Calderon, Erick Eiting, Karr Mullen, Sangyoon Jason Shin, Luz Amarilis Lugo, Antonio E Urbina, Carlotta Starks, Tonny Koo, Patricia Uychiat, Avery Look, Harm van Bakel, Ana Gonzalez-Reiche, Adolfo Firpo Betancourt, David Reich, Carlos Cordon-Cardo, Viviana Simon, Emilia M Sordillo, Juan David Ramírez
Evaluation and validation of an RT-PCR assay for specific detection of monkeypox virus (MPXV). Journal of medical virology (2022)
Milena Camargo, Laura Vega, Marina Muñoz, Ricardo Sánchez, Manuel Elkin Patarroyo, Juan David Ramírez, Manuel Alfonso Patarroyo
Changes in the Cervical Microbiota of Women with Different High-Risk Human Papillomavirus Loads. Viruses 14 (12) (2022)
Milena Camargo, Laura Vega, Marina Muñoz, Ricardo Sánchez, Manuel Elkin Patarroyo, Juan David Ramírez, Manuel Alfonso Patarroyo
Changes in the Cervical Microbiota of Women with Different High-Risk Human Papillomavirus Loads. Viruses 14 (12) (2022)
Nórida Vélez, Nelson Vega-Vela, Marina Muñoz, Paola Gómez, Patricia Escandón, Juan David Ramírez, Oscar Zaragoza, Lucia Monteoliva, Claudia Marcela Parra-Girado
Deciphering the Association among Pathogenicity, Production and Polymorphisms of Capsule/Melanin in Clinical Isolates of Cryptococcus neoformans var. grubii VNI. Journal of fungi (Basel, Switzerland) 8 (3) (2022)
Natalia Velásquez-Ortiz, Carolina Hernández, Omar Cantillo-Barraza, Nathalia Ballesteros, Lissa Cruz-Saavedra, Giovanny Herrera, Luz Stella Buitrago, Hugo Soto, Manuel Medina, Jatney Palacio, Marina Stella González, Andrés Cuervo, Gustavo Vallejo, Liliana Zuleta Dueñas, Plutarco Urbano, Marina Muñoz, Juan David Ramírez
Trypanosoma cruzi Parasite Burdens of Several Triatomine Species in Colombia. Tropical medicine and infectious disease 7 (12) (2022)
Nicolas Luna, Marina Muñoz, Angie L Ramírez, Luz H Patiño, Sergio Andres Castañeda, Nathalia Ballesteros, Juan David Ramírez
Genomic Diversity of SARS-CoV-2 Omicron Variant in South American Countries. Viruses 14 (6) (2022)
Natalia Velásquez-Ortiz, Carolina Hernández, Omar Cantillo-Barraza, Nathalia Ballesteros, Lissa Cruz-Saavedra, Giovanny Herrera, Luz Stella Buitrago, Hugo Soto, Manuel Medina, Jatney Palacio, Marina Stella González, Andrés Cuervo, Gustavo Vallejo, Liliana Zuleta Dueñas, Plutarco Urbano, Marina Muñoz, Juan David Ramírez
Trypanosoma cruzi Parasite Burdens of Several Triatomine Species in Colombia. Tropical medicine and infectious disease 7 (12) (2022)
Milena Camargo, Laura Vega, Marina Muñoz, Ricardo Sánchez, Manuel Elkin Patarroyo, Juan David Ramírez, Manuel Alfonso Patarroyo
Changes in the Cervical Microbiota of Women with Different High-Risk Human Papillomavirus Loads. Viruses 14 (12) (2022)
Giovanny Herrera, Juan Camilo Arboleda, Juan E Pérez-Jaramillo, Manuel Alfonso Patarroyo, Juan David Ramírez, Marina Muñoz
Microbial Interdomain Interactions Delineate the Disruptive Intestinal Homeostasis in Clostridioides difficile Infection. Microbiology spectrum 10 (5) (2022)
Natalia Velásquez-Ortiz, Carolina Hernández, Omar Cantillo-Barraza, Nathalia Ballesteros, Lissa Cruz-Saavedra, Giovanny Herrera, Luz Stella Buitrago, Hugo Soto, Manuel Medina, Jatney Palacio, Marina Stella González, Andrés Cuervo, Gustavo Vallejo, Liliana Zuleta Dueñas, Plutarco Urbano, Marina Muñoz, Juan David Ramírez
Trypanosoma cruzi Parasite Burdens of Several Triatomine Species in Colombia. Tropical medicine and infectious disease 7 (12) (2022)
Milena Camargo, Laura Vega, Marina Muñoz, Ricardo Sánchez, Manuel Elkin Patarroyo, Juan David Ramírez, Manuel Alfonso Patarroyo
Changes in the Cervical Microbiota of Women with Different High-Risk Human Papillomavirus Loads. Viruses 14 (12) (2022)
Natalia Velásquez-Ortiz, Carolina Hernández, Omar Cantillo-Barraza, Nathalia Ballesteros, Lissa Cruz-Saavedra, Giovanny Herrera, Luz Stella Buitrago, Hugo Soto, Manuel Medina, Jatney Palacio, Marina Stella González, Andrés Cuervo, Gustavo Vallejo, Liliana Zuleta Dueñas, Plutarco Urbano, Marina Muñoz, Juan David Ramírez
Trypanosoma cruzi Parasite Burdens of Several Triatomine Species in Colombia. Tropical medicine and infectious disease 7 (12) (2022)
Matthew M Hernandez, Mariawy Riollano-Cruz, Mary C Boyle, Radhika Banu, Paras Shrestha, Brandon Gray, Liyong Cao, Feng Chen, Huanzhi Shi, Daniel E Paniz-Perez, Paul A Paniz-Perez, Aryan L Rishi, Jacob Dubinsky, Dylan Dubinsky, Owen Dubinsky, Sophie Baine, Lily Baine, Suzanne Arinsburg, Ian Baine, Juan David Ramírez, Carlos Cordon-Cardo, Emilia Mia Sordillo, Alberto Paniz Mondolfi
Food for thought: Eating before saliva collection and interference with SARS-CoV-2 detection. Journal of medical virology 94 (6) (2022)
Natalia Velásquez-Ortiz, Carolina Hernández, Omar Cantillo-Barraza, Manuel Medina, Mabel Medina-Alfonso, Sandra Suescún-Carrero, Marina Muñoz, Laura Vega, Sergio Castañeda, Lissa Cruz-Saavedra, Nathalia Ballesteros, Juan David Ramírez
Estimating the genetic structure of Triatoma dimidiata (Hemiptera: Reduviidae) and the transmission dynamics of Trypanosoma cruzi in Boyacá, eastern Colombia. PLoS neglected tropical diseases 16 (7) (2022)
Milena Camargo, Laura Vega, Marina Muñoz, Ricardo Sánchez, Manuel Elkin Patarroyo, Juan David Ramírez, Manuel Alfonso Patarroyo
Changes in the Cervical Microbiota of Women with Different High-Risk Human Papillomavirus Loads. Viruses 14 (12) (2022)
Giovanny Herrera, Daniel Paredes-Sabja, Manuel Alfonso Patarroyo, Juan David Ramírez, Marina Muñoz
Updating changes in human gut microbial communities associated with Clostridioides difficile infection. Gut microbes 13 (1) (2022)
Matthew M Hernandez, Radhika Banu, Ana S Gonzalez-Reiche, Adriana van de Guchte, Zenab Khan, Paras Shrestha, Liyong Cao, Feng Chen, Huanzhi Shi, Ayman Hanna, Hala Alshammary, Shelcie Fabre, Angela Amoako, Ajay Obla, Bremy Alburquerque, Luz Helena Patiño, Juan David Ramírez, Robert Sebra, Melissa Randy Gitman, Michael D Nowak, Carlos Cordon-Cardo, Ted E Schutzbank, Viviana Simon, Harm van Bakel, Emilia Mia Sordillo, Alberto E Paniz-Mondolfi
Robust clinical detection of SARS-CoV-2 variants by RT-PCR/MALDI-TOF multi-target approach. Journal of medical virology (2021)
Maria I Osorio-Pulgarin, Adriana Higuera, Juan C Beltran-Álzate, Miryan Sánchez-Jiménez, Juan David Ramírez
Epidemiological and Molecular Characterization of Blastocystis Infection in Children Attending Daycare Centers in Medellín, Colombia. Biology 10 (7) (2021)
Carolina Hernández, Carolina Florez, Sergio Castañeda, Nathalia Ballesteros, David Martínez, Adriana Castillo, Marina Muñoz, Sergio Gomez, Angelica Rico, Liseth Pardo, Alberto Paniz Mondolfi, Juan David Ramírez
Evaluation of the diagnostic performance of nine commercial RT-PCR kits for the detection of SARS-CoV-2 in Colombia. Journal of medical virology 93 (9) (2021)
Laura Vega, Jesús Jaimes, Duvan Morales, David Martínez, Lissa Cruz-Saavedra, Marina Muñoz, Juan David Ramírez
Microbial Communities' Characterization in Urban Recreational Surface Waters Using Next Generation Sequencing. Microbial ecology 81 (4) (2021)
Julián Medina, Lissa Cruz-Saavedra, Luz Helena Patiño, Marina Muñoz, Juan David Ramírez
Comparative analysis of the transcriptional responses of five Leishmania species to trivalent antimony. Parasites & vectors 14 (1) (2021)
Luz H Patiño, Marina Muñoz, Paula Pavia, Carlos Muskus, Maryia Shaban, Alberto Paniz-Mondolfi, Juan David Ramírez
Filling the gaps in Leishmania naiffi and Leishmania guyanensis genome plasticity. G3 (Bethesda, Md.) (2021)
Lissa Cruz-Saavedra, Gustavo A Vallejo, Felipe Guhl, Louisa A Messenger, Juan David Ramírez
Transcriptional remodeling during metacyclogenesis in Trypanosoma cruzi I. Virulence 11 (1) (2021)
Juan David Ramírez, Marina Muñoz, Luz H Patiño, Nathalia Ballesteros, Alberto Paniz-Mondolfi
Will the emergent SARS-CoV2 B.1.1.7 lineage affect molecular diagnosis of COVID-19? Journal of medical virology 93 (5) (2021)
Juan David Ramírez, Marina Muñoz, Nathalia Ballesteros, Luz H Patiño, Sergio Castañeda, Carlos A Rincón, Claudia Mendez, Carolina Oliveros, Julie Perez, Elizabeth K Márquez, Frank de Los Santos Ortiz, Camilo A Correa-Cárdenas, Maria Clara Duque, Alberto Paniz-Mondolfi
Phylogenomic Evidence of Reinfection and Persistence of SARS-CoV-2: First Report from Colombia. Vaccines 9 (3) (2021)
Sergio Castañeda, Luz H Patiño, Marina Muñoz, Nathalia Ballesteros, Enzo Guerrero-Araya, Daniel Paredes-Sabja, Carolina Flórez, Sergio Gomez, Carolina Ramírez-Santana, Gustavo Salguero, Juan E Gallo, Alberto Paniz Mondolfi, Juan David Ramírez
Evolution and Epidemic Spread of SARS-CoV-2 in Colombia: A Year into the Pandemic. Vaccines 9 (8) (2021)
Alberto Paniz Mondolfi, Juan David Ramírez, Lourdes A Delgado Noguera, Alfonso Javier Rodriguez-Morales, Emilia Mia Sordillo
COVID-19 and helminth infection: Beyond the Th1/Th2 paradigm. PLoS neglected tropical diseases 15 (5) (2021)
Germán José Medina-Rincón, Sebastian Gallo-Bernal, Paula A Jiménez, Lissa Cruz-Saavedra, Juan David Ramírez, María Juliana Rodríguez, Ramón Medina-Mur, Gustavo Díaz-Nassif, María Daniela Valderrama-Achury, Héctor M Medina
Molecular and Clinical Aspects of Chronic Manifestations in Chagas Disease: A State-of-the-Art Review. Pathogens (Basel, Switzerland) 10 (11) (2021)
Nathalia Ballesteros, Marina Muñoz, Luz Helena Patiño, Carolina Hernández, Felipe González-Casabianca, Iván Carroll, Mauricio Santos-Vega, Jaime Cascante Vega, Andrés Angel, Alejandro Feged-Rivadeneira, Mónica Palma-Cuero, Carolina Flórez, Sergio Gomez, Adriana van de Guchte, Zenab Khan, Jayeeta Dutta, Ajay Obla, Hala Alejel Alshammary, Ana Silvia Gonzalez-Reiche, Matthew M Hernandez, Emilia Mia Sordillo, Viviana Simon, Harm van Bakel, Alberto Paniz Mondolfi, Juan David Ramírez
Deciphering the introduction and transmission of SARS-CoV-2 in the Colombian Amazon Basin. PLoS neglected tropical diseases 15 (4) (2021)
Matthew M Hernandez, Radhika Banu, Paras Shrestha, Armi Patel, Feng Chen, Liyong Cao, Shelcie Fabre, Jessica Tan, Heidi Lopez, Numthip Chiu, Biana Shifrin, Inessa Zapolskaya, Vanessa Flores, Pui Yiu Lee, Sergio Castañeda, Juan David Ramírez, Jeffrey Jhang, Giuliana Osorio, Melissa Randy Gitman, Michael D Nowak, David L Reich, Carlos Cordon-Cardo, Emilia Mia Sordillo, Alberto Paniz Mondolfi
RT-PCR/MALDI-TOF mass spectrometry-based detection of SARS-CoV-2 in saliva specimens. Journal of medical virology 93 (9) (2021)
Laura Vega, Giovanny Herrera, Marina Muñoz, Manuel Alfonso Patarroyo, Jenny G Maloney, Monica Santín, Juan David Ramírez
Gut microbiota profiles in diarrheic patients with co-occurrence of Clostridioides difficile and Blastocystis. PloS one 16 (3) (2021)
Viviana Aya, Alberto Flórez, Luis Perez, Juan David Ramírez
Association between physical activity and changes in intestinal microbiota composition: A systematic review. PloS one 16 (2) (2021)
Angie L Ramírez, Giovanny Herrera, Marina Muñoz, Laura Vega, Lissa Cruz-Saavedra, Diego J Garcia-Corredor, Martin O Pulido-Medellin, Diana M Bulla-Castañeda, Julio Cesar Giraldo, María Consuelo Bernal, José Fernández-Manrique, Luis Reinel Vásquez, Juan David Ramírez
Describing the intestinal microbiota of Holstein Fasciola-positive and -negative cattle from a hyperendemic area of fascioliasis in central Colombia. PLoS neglected tropical diseases 15 (8) (2021)
Santiago A Quiroga, Carolina Hernández, Sergio Castañeda, Paula Jimenez, Laura Vega, Marcela Gomez, David Martinez, Nathalia Ballesteros, Marina Muñoz, Claudia Cifuentes, Nathalia Sierra, Carolina Flórez, Alberto Paniz-Mondolfi, Juan David Ramírez
Contrasting SARS-CoV-2 RNA copies and clinical symptoms in a large cohort of Colombian patients during the first wave of the COVID-19 pandemic. Annals of clinical microbiology and antimicrobials 20 (1) (2021)
Luz H Patiño, Adriana C Castillo-Castañeda, Marina Muñoz, Jesus E Jaimes, Nicolas Luna-Niño, Carolina Hernández, Martha S Ayala, Patricia Fuya, Claudia Mendez, Carlos E Hernández-Pereira, Lourdes Delgado, Claudia M Sandoval-Ramírez, Plutarco Urbano, Alberto Paniz-Mondolfi, Juan David Ramírez
Development of an Amplicon-Based Next-Generation Sequencing Protocol to Identify Leishmania Species and Other Trypanosomatids in Leishmaniasis Endemic Areas. Microbiology spectrum 9 (2) (2021)
Luisa Páez-Triana, Marina Muñoz, Giovanny Herrera, Darwin A Moreno-Pérez, Gabriel A Tafur-Gómez, Diego Montenegro, Manuel A Patarroyo, Alberto Paniz-Mondolfi, Juan David Ramírez
Genetic diversity and population structure of Rhipicephalus sanguineus sensu lato across different regions of Colombia. Parasites & vectors 14 (1) (2021)
Stephanie Shea, Marina Muñoz, Stephen C Ward, Mary B Beasley, Melissa R Gitman, Michael D Nowak, Jane Houldsworth, Emilia Mia Sordillo, Juan David Ramírez, Alberto E Paniz Mondolfi
Human Papillomavirus (HPV69/HPV73) Coinfection associated with Simultaneous Squamous Cell Carcinoma of the Anus and Presumed Lung Metastasis. Viruses 12 (3) (2020)
Marina Muñoz, Daniel Restrepo-Montoya, Nitin Kumar, Gregorio Iraola, Giovanny Herrera, Dora I Ríos-Chaparro, Diana Díaz-Arévalo, Manuel A Patarroyo, Trevor D Lawley, Juan David Ramírez
Comparative genomics identifies potential virulence factors in Clostridium tertium and C. paraputrificum. Virulence 10 (1) (2020)
Juan David Ramírez, Marina Muñoz, Carolina Hernández, Carolina Flórez, Sergio Gomez, Angelica Rico, Lisseth Pardo, Esther C Barros, Alberto E Paniz-Mondolfi
Genetic Diversity Among SARS-CoV2 Strains in South America may Impact Performance of Molecular Detection. Pathogens (Basel, Switzerland) 9 (7) (2020)
Lissa Cruz-Saavedra, Gustavo Adolfo Vallejo, Felipe Guhl, Juan David Ramírez
Transcriptomic changes across the life cycle of Trypanosoma cruzi II. PeerJ 8 (2020)
Aníbal A Teherán, Gabriel Camero, Carolina Hernández, Luis Perez-Garcia, Renato Gúzman, Alberto Paniz-Mondolfi, Juan David Ramírez
Potential negative effects of the free use of chloroquine to manage COVID-19 in Colombia. Journal of medical virology 92 (11) (2020)
Adriana Higuera, Marina Muñoz, Myriam Consuelo López, Patricia Reyes, Plutarco Urbano, Oswaldo Villalobos, Juan David Ramírez
Development of a Multilocus Sequence Typing Scheme for Giardia intestinalis. Genes 11 (7) (2020)
Nathalia Ballesteros, Nubia M Vásquez, Luz H Patiño, Lissa Cruz-Saavedra, Juan David Ramírez
Minor temperature shifts do not affect chromosomal ploidy but cause transcriptomic changes in Leishmania braziliensis promastigotes in vitro. Memorias do Instituto Oswaldo Cruz 115 (2020)
D Montenegro, L Martinez, K Tay, T Hernandez, D Noriega, L Barbosa, J Muñoz, H Mateus, J Daza, A Teherán, Juan David Ramírez
Usefulness of autocidal gravid ovitraps for the surveillance and control of Aedes (Stegomyia) aegypti (Diptera: Culicidae) in eastern Colombia. Medical and veterinary entomology 34 (4) (2020)
Aníbal A Teherán, Gabriel Camero Ramos, Ronald Prado de la Guardia, Carolina Hernández, Giovanny Herrera, Luis M Pombo, Albert Alejandro Avila, Carolina Flórez, Esther C Barros, Luis Perez-Garcia, Alberto Paniz-Mondolfi, Juan David Ramírez
Epidemiological characterisation of asymptomatic carriers of COVID-19 in Colombia: a cross-sectional study. BMJ open 10 (12) (2020)
Claudia M Sandoval-Ramírez, Carolina Hernández, Aníbal A Teherán, Reinaldo Gutierrez-Marin, Ruth A Martínez-Vega, Duvan Morales, Richard Hoyos-Lopez, Astrid Araque-Mogollón, Juan David Ramírez
Complex ecological interactions across a focus of cutaneous leishmaniasis in Eastern Colombia: novel description of Leishmania species, hosts and phlebotomine fauna. Royal Society open science 7 (7) (2020)
Claudia M Sandoval-Ramírez, Carolina Hernández, Aníbal A Teherán, Reinaldo Gutierrez-Marin, Ruth A Martínez-Vega, Duvan Morales, Richard Hoyos-Lopez, Astrid Araque-Mogollón, Juan David Ramírez
Correction to 'Complex ecological interactions across a focus of cutaneous leishmaniasis in Eastern Colombia: novel description of Leishmania species, hosts and phlebotomine fauna'. Royal Society open science 7 (8) (2020)
Philipp Schwabl, Jalil Maiguashca Sánchez, Jaime A Costales, Sofía Ocaña-Mayorga, Maikell Segovia, Hernán José Carrasco, Carolina Hernández, Juan David Ramírez, Michael D Lewis, Mario J Grijalva, Martin S Llewellyn
Culture-free genome-wide locus sequence typing (GLST) provides new perspectives on Trypanosoma cruzi dispersal and infection complexity. PLoS genetics 16 (12) (2020)
Lissa Cruz-Saavedra, Marina Muñoz, Luz Helena Patiño, Gustavo A Vallejo, Felipe Guhl, Juan David Ramírez
Slight temperature changes cause rapid transcriptomic responses in Trypanosoma cruzi metacyclic trypomastigotes. Parasites & vectors 13 (1) (2020)
Sergio Castañeda, Marina Muñoz, Ximena Villamizar, Paula C Hernández, Luis Reinel Vásquez, Raúl Yhossef Tito, Juan David Ramírez
Microbiota characterization in Blastocystis-colonized and Blastocystis-free school-age children from Colombia. Parasites & vectors 13 (1) (2020)
Luisa M Arias-Giraldo, Marina Muñoz, Carolina Hernández, Giovanny Herrera, Natalia Velásquez-Ortiz, Omar Cantillo-Barraza, Plutarco Urbano, Juan David Ramírez
Species-dependent variation of the gut bacterial communities across Trypanosoma cruzi insect vectors. PloS one 15 (11) (2020)
Luisa M Arias-Giraldo, Marina Muñoz, Carolina Hernández, Giovanny Herrera, Natalia Velásquez-Ortiz, Omar Cantillo-Barraza, Plutarco Urbano, Andrés Cuervo, Juan David Ramírez
Identification of blood-feeding sources in Panstrongylus, Psammolestes, Rhodnius and Triatoma using amplicon-based next-generation sequencing. Parasites & vectors 13 (1) (2020)
Adriana Higuera, Ximena Villamizar, Giovanny Herrera, Julio Cesar Giraldo, Luis Reinel Vasquez-A, Plutarco Urbano, Oswaldo Villalobos, Catalina Tovar Acero, Juan David Ramírez
Molecular detection and genotyping of intestinal protozoa from different biogeographical regions of Colombia. PeerJ 8 (2020)
Juan David Ramírez, Carolina Florez, Marina Muñoz, Carolina Hernández, Adriana Castillo, Sergio Gomez, Angelica Rico, Lisseth Pardo, Esther C Barros, Sergio Castañeda, Nathalia Ballesteros, David Martínez, Laura Vega, Jesús E Jaimes, Lissa Cruz-Saavedra, Giovanny Herrera, Luz H Patiño, Aníbal A Teherán, Ana S Gonzalez-Reiche, Matthew M Hernandez, Emilia Mia Sordillo, Viviana Simon, Harm van Bakel, Alberto Paniz Mondolfi
The arrival and spread of SARS-CoV-2 in Colombia. Journal of medical virology 93 (2) (2020)
Agathe Chavy, Alessandra Ferreira Dales Nava, Sergio Luiz Bessa Luz, Juan David Ramírez, Giovanny Herrera, Thiago Vasconcelos Dos Santos, Marine Ginouves, Magalie Demar, Ghislaine Prévot, Jean-François Guégan, Benoit de Thoisy
Ecological niche modelling for predicting the risk of cutaneous leishmaniasis in the Neotropical moist forest biome. PLoS neglected tropical diseases 13 (8) (2019)
Valentina Caicedo-Garzón, Fabian C Salgado-Roa, Melissa Sánchez-Herrera, Carolina Hernández, Luisa María Arias-Giraldo, Lineth García, Gustavo Vallejo, Omar Cantillo, Catalina Tovar, Joao Aristeu da Rosa, Hernán J Carrasco, Maikell Segovia, Camilo Salazar, Juan David Ramírez
Genetic diversification of Panstrongylus geniculatus (Reduviidae: Triatominae) in northern South America. PloS one 14 (10) (2019)
Luz H Patino, Carlos Muskus, Juan David Ramírez
Transcriptional responses of Leishmania (Leishmania) amazonensis in the presence of trivalent sodium stibogluconate. Parasites & vectors 12 (1) (2019)
Paula Andrea Jiménez, Jesús Eduardo Jaimes, Juan David Ramírez
A summary of Blastocystis subtypes in North and South America. Parasites & vectors 12 (1) (2019)
Giovanny Herrera, Adriana Castillo, Martha S Ayala, Carolina Flórez, Omar Cantillo-Barraza, Juan David Ramírez
Evaluation of four rapid diagnostic tests for canine and human visceral Leishmaniasis in Colombia. BMC infectious diseases 19 (1) (2019)
Juliana Damieli Nascimento, João Aristeu da Rosa, Fabian C Salgado-Roa, Carolina Hernández, Carolina Pardo-Diaz, Kaio Cesar Chaboli Alevi, Amanda Ravazi, Jader de Oliveira, Maria Tercília Vilela de Azeredo Oliveira, Camilo Salazar, Juan David Ramírez
Taxonomical over splitting in the Rhodnius prolixus (Insecta: Hemiptera: Reduviidae) clade: Are R. taquarussuensis (da Rosa et al., 2017) and R. neglectus (Lent, 1954) the same species? PloS one 14 (2) (2019)
Alex J Forero, Marina Muñoz, Milena Camargo, Sara C Soto-De León, Dora I Ríos-Chaparro, Claudia Birchenall, Darío Pinilla, Juan M Pardo, Diego F Josa, Manuel A Patarroyo, Juan David Ramírez
High frequency of toxigenic Clostridium difficile and Clostridium perfringens coinfection among diarrheic patients at health care facility-onset (HCFO) and community-onset (CO) centers in Bogotá, Colombia. Gut pathogens 11 (2019)
Ximena Villamizar, Adriana Higuera, Giovanny Herrera, Luis Reinel Vasquez-A, Lorena Buitron, Lina Maria Muñoz, Fabiola E Gonzalez-C, Myriam Consuelo Lopez, Julio Cesar Giraldo, Juan David Ramírez
Molecular and descriptive epidemiology of intestinal protozoan parasites of children and their pets in Cauca, Colombia: a cross-sectional study. BMC infectious diseases 19 (1) (2019)
Natalia Velásquez-Ortiz, Carolina Hernández, Giovanny Herrera, Lissa Cruz-Saavedra, Adriana Higuera, Luisa M Arias-Giraldo, Plutarco Urbano, Andrés Cuervo, Aníbal Teherán, Juan David Ramírez
Trypanosoma cruzi infection, discrete typing units and feeding sources among Psammolestes arthuri (Reduviidae: Triatominae) collected in eastern Colombia. Parasites & vectors 12 (1) (2019)
César Gómez-Hernández, Sergio D Pérez, Karine Rezende-Oliveira, Cecilia G Barbosa, Eliane Lages-Silva, Luis Eduardo Ramírez, Juan David Ramírez
Evaluation of the multispecies coalescent method to explore intra-Trypanosoma cruzi I relationships and genetic diversity. Parasitology 146 (8) (2019)
Claudia Sánchez, Myriam Consuelo López, Luis Alejandro Galeano, Yvonne Qvarnstrom, Katelyn Houghton, Juan David Ramírez
Molecular detection and genotyping of pathogenic protozoan parasites in raw and treated water samples from southwest Colombia. Parasites & vectors 11 (1) (2018)
Carolina Hernández, Aníbal Teherán, Carolina Flórez, Juan David Ramírez
Comparison of parasite loads in serum and blood samples from patients in acute and chronic phases of Chagas disease. Parasitology 145 (14) (2018)
Giovanny Herrera, Aníbal A Teherán, Iván Pradilla, Mauricio Vera, Juan David Ramírez
Geospatial-temporal distribution of Tegumentary Leishmaniasis in Colombia (2007-2016). PLoS neglected tropical diseases 12 (4) (2018)
Paula Jiménez, Jesús Jaimes, Cristina Poveda, Juan David Ramírez
A systematic review of the Trypanosoma cruzi genetic heterogeneity, host immune response and genetic factors as plausible drivers of chronic chagasic cardiomyopathy. Parasitology 146 (3) (2018)
Juan David Ramírez, Giovanny Herrera, Carolina Hernández, Lissa Cruz-Saavedra, Marina Muñoz, Carolina Flórez, Robert Butcher
Evaluation of the analytical and diagnostic performance of a digital droplet polymerase chain reaction (ddPCR) assay to detect Trypanosoma cruzi DNA in blood samples. PLoS neglected tropical diseases 12 (12) (2018)
Laura D Tamayo, Felipe Guhl, Gustavo A Vallejo, Juan David Ramírez
The effect of temperature increase on the development of Rhodnius prolixus and the course of Trypanosoma cruzi metacyclogenesis. PLoS neglected tropical diseases 12 (8) (2018)
Marina Muñoz, Milena Camargo, Dora Inés Ríos-Chaparro, Paula Gómez, Manuel Alfonso Patarroyo, Juan David Ramírez
Community-acquired infection with hypervirulent Clostridium difficile isolates that carry different toxin and antibiotic resistance loci: a case report. Gut pathogens 9 (2017)
Luz H Patino, Claudia Mendez, Omaira Rodriguez, Yanira Romero, Daniel Velandia, Maria Alvarado, Julie Pérez, Maria Clara Duque, Juan David Ramírez
Spatial distribution, Leishmania species and clinical traits of Cutaneous Leishmaniasis cases in the Colombian army. PLoS neglected tropical diseases 11 (8) (2017)
Juan David Ramírez, Carolina Flórez, Mario Olivera, María Consuelo Bernal, Julio Cesar Giraldo
Blastocystis subtyping and its association with intestinal parasites in children from different geographical regions of Colombia. PloS one 12 (2) (2017)
Cielo M León, Marleny Montilla, Ricardo Vanegas, Maria Castillo, Edgar Parra, Juan David Ramírez
Murine models susceptibility to distinct Trypanosoma cruzi I genotypes infection. Parasitology 144 (4) (2016)

Juan David Ramírez.css-eqlu8i{font-size:small;padding-left:4px;} (Juan D Ramírez, J D Ramírez, Juan David Ramirez)

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Juan David Ramírez (Juan D Ramírez, J D Ramírez, Juan David Ramirez)