Julie Deborah Forman-Kay (Julie D Forman Kay, Julie D Forman-Kay, Julie Forman-Kay)

Publication Activity (10 Years)

Years Active: 2018-2024
Publications (10 Years): 49

Top Topics

Molecular Dynamics Simulations

Binding Protein

Top Venues

Proceedings of the National Academy of Sciences of the United States of America

Journal of the American Chemical Society

This page only lists publications with an associated author ORCID identifier.

Publications

Ke Lai, Iva Pritišanac, Zhen-Qi Liu, Han-Wei Liu, Li-Na Gong, Ming-Xian Li, Jian-Fei Lu, Xin Qi, Tian-Le Xu, Julie Deborah Forman-Kay, Hai-Bo Shi, Lu-Yang Wang, Shan-Kai Yin
Glutamate acts on acid-sensing ion channels to worsen ischaemic brain injury. Nature 631 (8022) (2024)
Ke Lai, Iva Pritišanac, Zhen-Qi Liu, Han-Wei Liu, Li-Na Gong, Ming-Xian Li, Jian-Fei Lu, Xin Qi, Tian-Le Xu, Julie Deborah Forman-Kay, Hai-Bo Shi, Lu-Yang Wang, Shan-Kai Yin
Glutamate acts on acid-sensing ion channels to worsen ischaemic brain injury. Nature (2024)
Rashik Ahmed, Mingyang Liang, Rhea P Hudson, Atul K Rangadurai, Shuya Kate Huang, Julie Deborah Forman-Kay, Lewis E Kay
Atomic resolution map of the solvent interactions driving SOD1 unfolding in CAPRIN1 condensates. Proceedings of the National Academy of Sciences of the United States of America 121 (35) (2024)
Ke Lai, Iva Pritišanac, Zhen-Qi Liu, Han-Wei Liu, Li-Na Gong, Ming-Xian Li, Jian-Fei Lu, Xin Qi, Tian-Le Xu, Julie Deborah Forman-Kay, Hai-Bo Shi, Lu-Yang Wang, Shan-Kai Yin
Glutamate acts on acid-sensing ion channels to worsen ischaemic brain injury. Nature 631 (8022) (2024)
Rashik Ahmed, Mingyang Liang, Rhea P Hudson, Atul K Rangadurai, Shuya Kate Huang, Julie Deborah Forman-Kay, Lewis E Kay
Atomic resolution map of the solvent interactions driving SOD1 unfolding in CAPRIN1 condensates. Proceedings of the National Academy of Sciences of the United States of America 121 (35) (2024)
Rashik Ahmed, Mingyang Liang, Rhea P Hudson, Atul K Rangadurai, Shuya Kate Huang, Julie Deborah Forman-Kay, Lewis E Kay
Atomic resolution map of the solvent interactions driving SOD1 unfolding in CAPRIN1 condensates. Proceedings of the National Academy of Sciences of the United States of America 121 (35) (2024)
Atul K Rangadurai, Lisa Ruetz, Rashik Ahmed, Kristen Lo, Martin Tollinger, Julie Deborah Forman-Kay, Christoph Kreutz, Lewis E Kay
Phase Separation Modulates the Thermodynamics and Kinetics of RNA Hybridization. Journal of the American Chemical Society 146 (29) (2024)
Ke Lai, Iva Pritišanac, Zhen-Qi Liu, Han-Wei Liu, Li-Na Gong, Ming-Xian Li, Jian-Fei Lu, Xin Qi, Tian-Le Xu, Julie Deborah Forman-Kay, Hai-Bo Shi, Lu-Yang Wang, Shan-Kai Yin
Glutamate acts on acid-sensing ion channels to worsen ischaemic brain injury. Nature 631 (8022) (2024)
Atul K Rangadurai, Lisa Ruetz, Rashik Ahmed, Kristen Lo, Martin Tollinger, Julie Deborah Forman-Kay, Christoph Kreutz, Lewis E Kay
Phase Separation Modulates the Thermodynamics and Kinetics of RNA Hybridization. Journal of the American Chemical Society 146 (29) (2024)
Ke Lai, Iva Pritišanac, Zhen-Qi Liu, Han-Wei Liu, Li-Na Gong, Ming-Xian Li, Jian-Fei Lu, Xin Qi, Tian-Le Xu, Julie Deborah Forman-Kay, Hai-Bo Shi, Lu-Yang Wang, Shan-Kai Yin
Glutamate acts on acid-sensing ion channels to worsen ischaemic brain injury. Nature 631 (8022) (2024)
Rashik Ahmed, Mingyang Liang, Rhea P Hudson, Atul K Rangadurai, Shuya Kate Huang, Julie Deborah Forman-Kay, Lewis E Kay
Atomic resolution map of the solvent interactions driving SOD1 unfolding in CAPRIN1 condensates. Proceedings of the National Academy of Sciences of the United States of America 121 (35) (2024)
Atul K Rangadurai, Lisa Ruetz, Rashik Ahmed, Kristen Lo, Martin Tollinger, Julie Deborah Forman-Kay, Christoph Kreutz, Lewis E Kay
Phase Separation Modulates the Thermodynamics and Kinetics of RNA Hybridization. Journal of the American Chemical Society (2024)
Ke Lai, Iva Pritišanac, Zhen-Qi Liu, Han-Wei Liu, Li-Na Gong, Ming-Xian Li, Jian-Fei Lu, Xin Qi, Tian-Le Xu, Julie Deborah Forman-Kay, Hai-Bo Shi, Lu-Yang Wang, Shan-Kai Yin
Glutamate acts on acid-sensing ion channels to worsen ischaemic brain injury. Nature (2024)
Zi Hao Liu, Oufan Zhang, João M C Teixeira, Jie Li, Teresa Head-Gordon, Julie Deborah Forman-Kay
SPyCi-PDB: A modular command-line interface for back-calculating experimental datatypes of protein structures. Journal of open source software 8 (85) (2023)
Rashik Ahmed, Julie Deborah Forman-Kay
Aberrant phase separation: linking IDR mutations to disease. Cell research (2023)
Zi Hao Liu, Oufan Zhang, João M C Teixeira, Jie Li, Teresa Head-Gordon, Julie Deborah Forman-Kay
SPyCi-PDB: A modular command-line interface for back-calculating experimental datatypes of protein structures. Journal of open source software 8 (85) (2023)
Zi Hao Liu, João M C Teixeira, Oufan Zhang, Thomas E Tsangaris, Jie Li, Claudiu C Gradinaru, Teresa Head-Gordon, Julie Deborah Forman-Kay
Local Disordered Region Sampling (LDRS) for Ensemble Modeling of Proteins with Experimentally Undetermined or Low Confidence Prediction Segments. bioRxiv : the preprint server for biology (2023)
Thomas E Tsangaris, Spencer Smyth, Gregory-Neal W Gomes, Zi Hao Liu, Moses Milchberg, Alaji Bah, Gregory A Wasney, Julie Deborah Forman-Kay, Claudiu C Gradinaru
Delineating Structural Propensities of the 4E-BP2 Protein via Integrative Modeling and Clustering. The journal of physical chemistry. B (2023)
Kevin Carter-Fenk, Meili Liu, Leila Pujal, Matthias Loipersberger, Maria Tsanai, Robert M Vernon, Julie Deborah Forman-Kay, Martin Head-Gordon, Farnaz Heidar-Zadeh, Teresa Head-Gordon
The Energetic Origins of Pi-Pi Contacts in Proteins. Journal of the American Chemical Society (2023)
T Reid Alderson, Iva Pritišanac, Đesika Kolarić, Alan M Moses, Julie Deborah Forman-Kay
Systematic identification of conditionally folded intrinsically disordered regions by AlphaFold2. Proceedings of the National Academy of Sciences of the United States of America 120 (44) (2023)
Jie Li, Oufan Zhang, Seokyoung Lee, Ashley Namini, Zi Hao Liu, João M C Teixeira, Julie Deborah Forman-Kay, Teresa Head-Gordon
Learning Correlations between Internal Coordinates to Improve 3D Cartesian Coordinates for Proteins. Journal of chemical theory and computation (2023)
Oufan Zhang, Mojtaba Haghighatlari, Jie Li, Zi Hao Liu, Ashley Namini, João M C Teixeira, Julie Deborah Forman-Kay, Teresa Head-Gordon
Learning to evolve structural ensembles of unfolded and disordered proteins using experimental solution data. The Journal of chemical physics 158 (17) (2023)
Jie Li, Oufan Zhang, Seokyoung Lee, Ashley Namini, Zi Hao Liu, João M C Teixeira, Julie Deborah Forman-Kay, Teresa Head-Gordon
Learning Correlations between Internal Coordinates to Improve 3D Cartesian Coordinates for Proteins. Journal of chemical theory and computation (2023)
Erin E Duffy, Benjamin Finander, GiHun Choi, Ava C Carter, Iva Pritisanac, Aqsa Alam, Victor Luria, Amir Karger, William Phu, Maxwell A Sherman, Elena G Assad, Naomi Pajarillo, Alexandra Khitun, Elizabeth E Crouch, Sanika Ganesh, Jin Chen, Bonnie Berger, Nenad Sestan, Anne H O'Donnell-Luria, Eric J Huang, Eric C Griffith, Julie Deborah Forman-Kay, Alan M Moses, Brian T Kalish, Michael Eldon Greenberg
Developmental dynamics of RNA translation in the human brain. Nature neuroscience 25 (10) (2022)
Rashik Ahmed, Julie Deborah Forman-Kay
NMR insights into dynamic, multivalent interactions of intrinsically disordered regions: from discrete complexes to condensates. Essays in biochemistry (2022)
Pavithra M Naullage, Mojtaba Haghighatlari, Ashley Namini, João M C Teixeira, Jie Li, Oufan Zhang, Claudiu C Gradinaru, Julie Deborah Forman-Kay, Teresa Head-Gordon
Protein Dynamics to Define and Refine Disordered Protein Ensembles. The journal of physical chemistry. B 126 (9) (2022)
Hao Cai, Robert M Vernon, Julie Deborah Forman-Kay
An Interpretable Machine-Learning Algorithm to Predict Disordered Protein Phase Separation Based on Biophysical Interactions. Biomolecules 12 (8) (2022)
Yuki Toyama, Atul Kaushik Rangadurai, Julie Deborah Forman-Kay, Lewis E Kay
Mapping the per-residue surface electrostatic potential of CAPRIN1 along its phase-separation trajectory. Proceedings of the National Academy of Sciences of the United States of America 119 (36) (2022)
João M C Teixeira, Zi Hao Liu, Ashley Namini, Jie Li, Robert M Vernon, Mickaël Krzeminski, Alaa A Shamandy, Oufan Zhang, Mojtaba Haghighatlari, Lei Yu, Teresa Head-Gordon, Julie Deborah Forman-Kay
IDPConformerGenerator: A Flexible Software Suite for Sampling the Conformational Space of Disordered Protein States. The journal of physical chemistry. A 126 (35) (2022)
Muntasir Kamal, Levon Tokmakjian, Jessica Knox, Peter Mastrangelo, Jingxiu Ji, Hao Cai, Jakub W Wojciechowski, Michael P Hughes, Kristóf Takács, Xiaoquan Chu, Jianfeng Pei, Vince Grolmusz, Małgorzata Kotulska, Julie Deborah Forman-Kay, Peter J Roy
A spatiotemporal reconstruction of the C. elegans pharyngeal cuticle reveals a structure rich in phase-separating proteins. eLife 11 (2022)
Michael L Nosella, Maria Tereshchenko, Iva Pritišanac, P Andrew Chong, Jeffrey A Toretsky, Hyun O Lee, Julie Deborah Forman-Kay
O-Linked-N-Acetylglucosaminylation of the RNA-Binding Protein EWS N-Terminal Low Complexity Region Reduces Phase Separation and Enhances Condensate Dynamics. Journal of the American Chemical Society 143 (30) (2021)
Amar J Majmundar, Florian Buerger, Thomas A Forbes, Verena Klämbt, Friedhelm Hildebrandt, Konstantin Deutsch, Thomas M Kitzler, Sara E Howden, Michelle Scurr, Ker Sin Tan, Mickaël Krzeminski, Eugen Widmeier, Daniela A Braun, Ethan Lai, Ihsan Ullah, Ali Amar, Amy Kolb, Kaitlyn Eddy, Chin Heng Chen, Daanya Salmanullah, Rufeng Dai, Makiko Nakayama, Isabel Ottlewski, Caroline M Kolvenbach, Ana C Onuchic-Whitford, Youying Mao, Nina Mann, Marwa M Nabhan, Seymour Rosen, Julie Deborah Forman-Kay, Neveen A Soliman, Andreas Heilos, Renate Kain, Christoph Aufricht, Shrikant M Mane, Richard P Lifton, Shirlee Shril, Melissa H Little, Friedhelm Hildebrandt
Recessive NOS1AP variants impair actin remodeling and cause glomerulopathy in humans and mice. Science advances 7 (1) (2021)
Taraneh Zarin, Bob Strome, Gang Peng, Iva Pritišanac, Julie Deborah Forman-Kay, Alan M Moses
Identifying molecular features that are associated with biological function of intrinsically disordered protein regions. eLife 10 (2021)
Nicol Birsa, Agnieszka M Ule, Maria Giovanna Garone, Brian Tsang, Francesca Mattedi, P Andrew Chong, Jack Humphrey, Seth Jarvis, Melis Pisiren, Oscar G Wilkins, Micheal L Nosella, Anny Devoy, Cristian Bodo, Rafaela Fernandez de la Fuente, Elizabeth M C Fisher, Alessandro Rosa, Gabriella Viero, Julie Deborah Forman-Kay, Giampietro Schiavo, Pietro Fratta
FUS-ALS mutants alter FMRP phase separation equilibrium and impair protein translation. Science advances 7 (30) (2021)
Yi Xin Iris Tu, Andrew Michael Sydor, Etienne Coyaud, Estelle M N Laurent, Diana Dyer, Nora Mellouk, Jonathan St-Germain, Robert M Vernon, Julie Deborah Forman-Kay, Taoyingnan Li, Rong Hua, Kexin Zhao, Neale D Ridgway, Peter Kijun Kim, Brian Raught, John H Brumell
Global Proximity Interactome of the Human Macroautophagy Pathway. Autophagy (2021)
Meili Liu, Akshaya K Das, James Lincoff, Sukanya Sasmal, Sara Y Cheng, Robert M Vernon, Julie Deborah Forman-Kay, Teresa Head-Gordon
Configurational Entropy of Folded Proteins and Its Importance for Intrinsically Disordered Proteins. International journal of molecular sciences 22 (7) (2021)
Julie Deborah Forman-Kay, Jonathon A Ditlev, Michael L Nosella, Hyun O Lee
What are the distinguishing features and size requirements of biomolecular condensates and their implications for RNA-containing condensates? RNA (New York, N.Y.) (2021)
Tae Hun Kim, Brandon J Payliss, Michael L Nosella, Ian T W Lee, Yuki Toyama, Julie Deborah Forman-Kay, Lewis E Kay
Interaction hot spots for phase separation revealed by NMR studies of a CAPRIN1 condensed phase. Proceedings of the National Academy of Sciences of the United States of America 118 (23) (2021)
Tae Hun Kim, Brian Tsang, Robert M Vernon, Nahum Sonenberg, Lewis E Kay, Julie Deborah Forman-Kay
Phospho-dependent phase separation of FMRP and CAPRIN1 recapitulates regulation of translation and deadenylation. Science (New York, N.Y.) 365 (6455) (2020)
Suman Das, Yi-Hsuan Lin, Robert M Vernon, Julie Deborah Forman-Kay, Hue Sun Chan
Comparative roles of charge, π, and hydrophobic interactions in sequence-dependent phase separation of intrinsically disordered proteins. Proceedings of the National Academy of Sciences of the United States of America 117 (46) (2020)
Jennifer E Dawson, Alaji Bah, Zhenfu Zhang, Robert M Vernon, Hong Lin, P Andrew Chong, Manasvi Vanama, Nahum Sonenberg, Claudiu C Gradinaru, Julie Deborah Forman-Kay
Non-cooperative 4E-BP2 folding with exchange between eIF4E-binding and binding-incompatible states tunes cap-dependent translation inhibition. Nature communications 11 (1) (2020)
Gregory-Neal W Gomes, Mickaël Krzeminski, Ashley Namini, Erik W Martin, Tanja Mittag, Teresa Head-Gordon, Julie Deborah Forman-Kay, Claudiu C Gradinaru
Conformational Ensembles of an Intrinsically Disordered Protein Consistent with NMR, SAXS, and Single-Molecule FRET. Journal of the American Chemical Society 142 (37) (2020)
Leo E Wong, Tae Hun Kim, D Ranjith Muhandiram, Julie Deborah Forman-Kay, Lewis E Kay
NMR Experiments for Studies of Dilute and Condensed Protein Phases: Application to the Phase-Separating Protein CAPRIN1. Journal of the American Chemical Society 142 (5) (2020)
P Andrew Chong, Julie Deborah Forman-Kay
Oxidative Inhibition of Pbp1 Phase Separation. Biochemistry 58 (28) (2019)
Taraneh Zarin, Bob Strome, Alex N Nguyen Ba, Simon Alberti, Julie Deborah Forman-Kay, Alan M Moses
Proteome-wide signatures of function in highly diverged intrinsically disordered regions. eLife 8 (2019)
Brian Tsang, Jason Arsenault, Robert M Vernon, Hong Lin, Nahum Sonenberg, Lu-Yang Wang, Alaji Bah, Julie Deborah Forman-Kay
Phosphoregulated FMRP phase separation models activity-dependent translation through bidirectional control of mRNA granule formation. Proceedings of the National Academy of Sciences of the United States of America 116 (10) (2019)
Iva Pritišanac, Robert M Vernon, Alan M Moses, Julie Deborah Forman-Kay
Entropy and Information within Intrinsically Disordered Protein Regions. Entropy (Basel, Switzerland) 21 (7) (2019)
Robert McCoy Vernon, Paul Andrew Chong, Brian Tsang, Tae Hun Kim, Alaji Bah, Patrick Farber, Hong Lin, Julie Deborah Forman-Kay
Pi-Pi contacts are an overlooked protein feature relevant to phase separation. eLife 7 (2018)
Yi-Hsuan Lin, Julie Deborah Forman-Kay, Hue Sun Chan
Theories for Sequence-Dependent Phase Behaviors of Biomolecular Condensates. Biochemistry 57 (17) (2018)