Kentaro Tomii

ResearcherID ORCID

Publication Activity (10 Years)

Years Active: 2017-2024
Publications (10 Years): 28

Top Topics

Molecular Dynamics Simulations

Binding Protein

Top Venues

Nature structural & molecular biology

Nature communications

Biophysical reviews

BMC bioinformatics

This page only lists publications with an associated author ORCID identifier.

Publications

Christine Guzman, Kurato Mohri, Ryotaro Nakamura, Minato Miyake, Yuko Tsuchiya, Kentaro Tomii, Hiroshi Watanabe
Neuronal and non-neuronal functions of the synaptic cell adhesion molecule neurexin in Nematostella vectensis. Nature communications 15 (1) (2024)
Christine Guzman, Kurato Mohri, Ryotaro Nakamura, Minato Miyake, Yuko Tsuchiya, Kentaro Tomii, Hiroshi Watanabe
Neuronal and non-neuronal functions of the synaptic cell adhesion molecule neurexin in Nematostella vectensis. Nature communications 15 (1) (2024)
Christine Guzman, Kurato Mohri, Ryotaro Nakamura, Minato Miyake, Yuko Tsuchiya, Kentaro Tomii, Hiroshi Watanabe
Neuronal and non-neuronal functions of the synaptic cell adhesion molecule neurexin in Nematostella vectensis. Nature communications 15 (1) (2024)
Christine Guzman, Kurato Mohri, Ryotaro Nakamura, Minato Miyake, Yuko Tsuchiya, Kentaro Tomii, Hiroshi Watanabe
Neuronal and non-neuronal functions of the synaptic cell adhesion molecule neurexin in Nematostella vectensis. Nature communications 15 (1) (2024)
Hironori Takeda, Jon V Busto, Caroline Lindau, Akihisa Tsutsumi, Kentaro Tomii, Kenichiro Imai, Yu Yamamori, Takatsugu Hirokawa, Chie Motono, Iniyan Ganesan, Lena-Sophie Wenz, Thomas Becker, Masahide Kikkawa, Nikolaus Pfanner, Nils Wiedemann, Toshiya Endo
A multipoint guidance mechanism for β-barrel folding on the SAM complex. Nature structural & molecular biology 30 (2) (2023)
Hironori Takeda, Jon V Busto, Caroline Lindau, Akihisa Tsutsumi, Kentaro Tomii, Kenichiro Imai, Yu Yamamori, Takatsugu Hirokawa, Chie Motono, Iniyan Ganesan, Lena-Sophie Wenz, Thomas Becker, Masahide Kikkawa, Nikolaus Pfanner, Nils Wiedemann, Toshiya Endo
A multipoint guidance mechanism for β-barrel folding on the SAM complex. Nature structural & molecular biology (2023)
Hironori Takeda, Jon V Busto, Caroline Lindau, Akihisa Tsutsumi, Kentaro Tomii, Kenichiro Imai, Yu Yamamori, Takatsugu Hirokawa, Chie Motono, Iniyan Ganesan, Lena-Sophie Wenz, Thomas Becker, Masahide Kikkawa, Nikolaus Pfanner, Nils Wiedemann, Toshiya Endo
A multipoint guidance mechanism for β-barrel folding on the SAM complex. Nature structural & molecular biology (2023)
Hironori Takeda, Jon V Busto, Caroline Lindau, Akihisa Tsutsumi, Kentaro Tomii, Kenichiro Imai, Yu Yamamori, Takatsugu Hirokawa, Chie Motono, Iniyan Ganesan, Lena-Sophie Wenz, Thomas Becker, Masahide Kikkawa, Nikolaus Pfanner, Nils Wiedemann, Toshiya Endo
A multipoint guidance mechanism for β-barrel folding on the SAM complex. Nature structural & molecular biology 30 (2) (2023)
Yuko Tsuchiya, Tomoki Yonezawa, Yu Yamamori, Hiroko Inoura, Masanori Osawa, Kazuyoshi Ikeda, Kentaro Tomii
PoSSuM v.3: A Major Expansion of the PoSSuM Database for Finding Similar Binding Sites of Proteins. Journal of chemical information and modeling (2023)
Hironori Takeda, Jon V Busto, Caroline Lindau, Akihisa Tsutsumi, Kentaro Tomii, Kenichiro Imai, Yu Yamamori, Takatsugu Hirokawa, Chie Motono, Iniyan Ganesan, Lena-Sophie Wenz, Thomas Becker, Masahide Kikkawa, Nikolaus Pfanner, Nils Wiedemann, Toshiya Endo
A multipoint guidance mechanism for β-barrel folding on the SAM complex. Nature structural & molecular biology (2023)
Hironori Takeda, Jon V Busto, Caroline Lindau, Akihisa Tsutsumi, Kentaro Tomii, Kenichiro Imai, Yu Yamamori, Takatsugu Hirokawa, Chie Motono, Iniyan Ganesan, Lena-Sophie Wenz, Thomas Becker, Masahide Kikkawa, Nikolaus Pfanner, Nils Wiedemann, Toshiya Endo
A multipoint guidance mechanism for β-barrel folding on the SAM complex. Nature structural & molecular biology 30 (2) (2023)
Hironori Takeda, Jon V Busto, Caroline Lindau, Akihisa Tsutsumi, Kentaro Tomii, Kenichiro Imai, Yu Yamamori, Takatsugu Hirokawa, Chie Motono, Iniyan Ganesan, Lena-Sophie Wenz, Thomas Becker, Masahide Kikkawa, Nikolaus Pfanner, Nils Wiedemann, Toshiya Endo
Author Correction: A multipoint guidance mechanism for β-barrel folding on the SAM complex. Nature structural & molecular biology (2023)
Hironori Takeda, Jon V Busto, Caroline Lindau, Akihisa Tsutsumi, Kentaro Tomii, Kenichiro Imai, Yu Yamamori, Takatsugu Hirokawa, Chie Motono, Iniyan Ganesan, Lena-Sophie Wenz, Thomas Becker, Masahide Kikkawa, Nikolaus Pfanner, Nils Wiedemann, Toshiya Endo
Author Correction: A multipoint guidance mechanism for β-barrel folding on the SAM complex. Nature structural & molecular biology (2023)
Hiroto Kaneko, Hisashi Endo, Nicolas Henry, Cédric Berney, Frédéric Mahé, Julie Poulain, Karine Labadie, Odette Beluche, Roy El Hourany, null null, Samuel Chaffron, Patrick Wincker, Ryosuke Nakamura, Lee Karp-Boss, Emmanuel S Boss, Chris Bowler, Colomban de Vargas, Kentaro Tomii, Hiroyuki Ogata
Predicting global distributions of eukaryotic plankton communities from satellite data. ISME communications 3 (1) (2023)
Hironori Takeda, Jon V Busto, Caroline Lindau, Akihisa Tsutsumi, Kentaro Tomii, Kenichiro Imai, Yu Yamamori, Takatsugu Hirokawa, Chie Motono, Iniyan Ganesan, Lena-Sophie Wenz, Thomas Becker, Masahide Kikkawa, Nikolaus Pfanner, Nils Wiedemann, Toshiya Endo
A multipoint guidance mechanism for β-barrel folding on the SAM complex. Nature structural & molecular biology 30 (2) (2023)
Yuko Tsuchiya, Yu Yamamori, Kentaro Tomii
Protein-protein interaction prediction methods: from docking-based to AI-based approaches. Biophysical reviews 14 (6) (2022)
Yuko Tsuchiya, Yu Yamamori, Kentaro Tomii
Protein-protein interaction prediction methods: from docking-based to AI-based approaches. Biophysical reviews (2022)
Yuko Tsuchiya, Yu Yamamori, Kentaro Tomii
Protein-protein interaction prediction methods: from docking-based to AI-based approaches. Biophysical reviews (2022)
Yu Yamamori, Kentaro Tomii
Application of Homology Modeling by Enhanced Profile-Profile Alignment and Flexible-Fitting Simulation to Cryo-EM Based Structure Determination. International journal of molecular sciences 23 (4) (2022)
Hironori Takeda, Akihisa Tsutsumi, Tomohiro Nishizawa, Caroline Lindau, Jon V Busto, Lena-Sophie Wenz, Lars Ellenrieder, Kenichiro Imai, Sebastian P Straub, Waltraut Mossmann, Jian Qiu, Yu Yamamori, Kentaro Tomii, Junko Suzuki, Takeshi Murata, Satoshi Ogasawara, Osamu Nureki, Thomas Becker, Nikolaus Pfanner, Nils Wiedemann, Masahide Kikkawa, Toshiya Endo
Mitochondrial sorting and assembly machinery operates by β-barrel switching. Nature 590 (7844) (2021)
Herbert J Santos, Yoko Chiba, Takashi Makiuchi, Saki Arakawa, Yoshitaka Murakami, Kentaro Tomii, Kenichiro Imai, Tomoyoshi Nozaki
Import of Entamoeba histolytica Mitosomal ATP Sulfurylase Relies on Internal Targeting Sequences. Microorganisms 8 (8) (2020)
Hiroyuki Fukuda, Kentaro Tomii
DeepECA: an end-to-end learning framework for protein contact prediction from a multiple sequence alignment. BMC bioinformatics 21 (1) (2020)
Yoshinori Fukasawa, Kentaro Tomii
Accurate Classification of Biological and non-Biological Interfaces in Protein Crystal Structures using Subtle Covariation Signals. Scientific reports 9 (1) (2019)
Kumiko Nakada-Tsukui, Tsuyoshi Sekizuka, Emi Sato-Ebine, Aleyla Escueta-de Cadiz, Dar-der Ji, Kentaro Tomii, Makoto Kuroda, Tomoyoshi Nozaki
AIG1 affects in vitro and in vivo virulence in clinical isolates of Entamoeba histolytica. PLoS pathogens 14 (3) (2018)
Keiichirou Nemoto, Makiko Kagawa, Akira Nozawa, Yoshinori Hasegawa, Minoru Hayashi, Kenichiro Imai, Kentaro Tomii, Tatsuya Sawasaki
Identification of new abscisic acid receptor agonists using a wheat cell-free based drug screening system. Scientific reports 8 (1) (2018)
Tsukasa Nakamura, Toshiyuki Oda, Yoshinori Fukasawa, Kentaro Tomii
Template-based quaternary structure prediction of proteins using enhanced profile-profile alignments. Proteins (2017)
Toshiyuki Oda, Kyungtaek Lim, Kentaro Tomii
Simple adjustment of the sequence weight algorithm remarkably enhances PSI-BLAST performance. BMC bioinformatics 18 (1) (2017)
Keiichirou Nemoto, Abdelaziz Ramadan, Gen-Ichiro Arimura, Kenichiro Imai, Kentaro Tomii, Kazuo Shinozaki, Tatsuya Sawasaki
Tyrosine phosphorylation of the GARU E3 ubiquitin ligase promotes gibberellin signalling by preventing GID1 degradation. Nature communications 8 (1) (2017)