Hiroyuki Ogata

ORCID

Publication Activity (10 Years)

Years Active: 2015-2024
Publications (10 Years): 49

Top Venues

Molecular biology and evolution

mSystems

Archives of virology

bioRxiv : the preprint server for biology

Kyoto University

This page only lists publications with an associated author ORCID identifier.

Affiliation History

Kyoto University Apr 01 2014

Japan

Professor :: Institute for Chemical Research

Publications

Junyi Wu, Lingjie Meng, Morgan Gaïa, Hiroyuki Hikida, Yusuke Okazaki, Hisashi Endo, Hiroyuki Ogata
Gene transfer among viruses substantially contributes to gene gain of giant viruses. Molecular biology and evolution (2024)
Hongda Zhao, Lingjie Meng, Hiroyuki Hikida, Hiroyuki Ogata
Eukaryotic genomic data uncover an extensive host range of mirusviruses. bioRxiv : the preprint server for biology (2024)
Soichiro Kijima, Hiroyuki Hikida, Tom O Delmont, Morgan Gaia, Hiroyuki Ogata
Complex Genomes of Early Nucleocytoviruses Revealed by Ancient Origins of Viral Aminoacyl-tRNA Synthetases. Molecular biology and evolution 41 (8) (2024)
Soichiro Kijima, Hiroyuki Hikida, Tom O Delmont, Morgan Gaia, Hiroyuki Ogata
Complex Genomes of Early Nucleocytoviruses Revealed by Ancient Origins of Viral Aminoacyl-tRNA Synthetases. Molecular biology and evolution 41 (8) (2024)
Hongda Zhao, Lingjie Meng, Hiroyuki Hikida, Hiroyuki Ogata
Eukaryotic genomic data uncover an extensive host range of mirusviruses. bioRxiv : the preprint server for biology (2024)
Soichiro Kijima, Hiroyuki Hikida, Tom O Delmont, Morgan Gaïa, Hiroyuki Ogata
Complex genomes of early nucleocytoviruses revealed by ancient origins of viral aminoacyl-tRNA synthetases. Molecular biology and evolution (2024)
Junyi Wu, Lingjie Meng, Morgan Gaia, Hiroyuki Hikida, Yusuke Okazaki, Hisashi Endo, Hiroyuki Ogata
Gene Transfer Among Viruses Substantially Contributes to Gene Gain of Giant Viruses. Molecular biology and evolution 41 (8) (2024)
Junyi Wu, Lingjie Meng, Morgan Gaia, Hiroyuki Hikida, Yusuke Okazaki, Hisashi Endo, Hiroyuki Ogata
Gene Transfer Among Viruses Substantially Contributes to Gene Gain of Giant Viruses. Molecular biology and evolution 41 (8) (2024)
Hongda Zhao, Lingjie Meng, Hiroyuki Hikida, Hiroyuki Ogata
Eukaryotic genomic data uncover an extensive host range of mirusviruses. bioRxiv : the preprint server for biology (2024)
Soichiro Kijima, Hiroyuki Hikida, Tom O Delmont, Morgan Gaia, Hiroyuki Ogata
Complex Genomes of Early Nucleocytoviruses Revealed by Ancient Origins of Viral Aminoacyl-tRNA Synthetases. Molecular biology and evolution 41 (8) (2024)
Junyi Wu, Lingjie Meng, Morgan Gaia, Hiroyuki Hikida, Yusuke Okazaki, Hisashi Endo, Hiroyuki Ogata
Gene Transfer Among Viruses Substantially Contributes to Gene Gain of Giant Viruses. Molecular biology and evolution 41 (8) (2024)
Hongda Zhao, Lingjie Meng, Hiroyuki Hikida, Hiroyuki Ogata
Eukaryotic genomic data uncover an extensive host range of mirusviruses. bioRxiv : the preprint server for biology (2024)
Lingjie Meng, Tom O Delmont, Morgan Gaia, Eric Pelletier, Antonio Fernandez-Guerra, Samuel Chaffron, Russell Y Neches, Junyi Wu, Hiroto Kaneko, Hisashi Endo, Hiroyuki Ogata
Genomic adaptation of giant viruses in polar oceans. Nature communications 14 (1) (2023)
Ruixuan Zhang, Masaharu Takemura, Kazuyoshi Murata, Hiroyuki Ogata
"Mamonoviridae", a proposed new family of the phylum Nucleocytoviricota. Archives of virology 168 (3) (2023)
Kento Tominaga, Nana Ogawa-Haruki, Yosuke Nishimura, Hiroyasu Watai, Keigo Yamamoto, Hiroyuki Ogata, Takashi Yoshida
Prevalence of Viral Frequency-Dependent Infection in Coastal Marine Prokaryotes Revealed Using Monthly Time Series Virome Analysis. mSystems 8 (1) (2023)
Janaina Rigonato, Marko Budinich, Alejandro A Murillo, Manoela C Brandão, Juan J Pierella Karlusich, Yawouvi Dodji Soviadan, Ann C Gregory, Hisashi Endo, Florian Kokoszka, Dean Vik, Nicolas Henry, Paul Frémont, Karine Labadie, Ahmed A Zayed, Céline Dimier, Marc Picheral, Sarah Searson, Julie Poulain, Stefanie Kandels, Stéphane Pesant, Eric Karsenti, null null, Peer Bork, Chris Bowler, Colomban de Vargas, Damien Eveillard, Marion Gehlen, Daniele Iudicone, Fabien Lombard, Hiroyuki Ogata, Lars Stemmann, Matthew B Sullivan, Shinichi Sunagawa, Patrick Wincker, Samuel Chaffron, Olivier Jaillon
Ocean-wide comparisons of mesopelagic planktonic community structures. ISME communications 3 (1) (2023)
Kento Tominaga, Nana Ogawa-Haruki, Yosuke Nishimura, Hiroyasu Watai, Keigo Yamamoto, Hiroyuki Ogata, Takashi Yoshida
Prevalence of Viral Frequency-Dependent Infection in Coastal Marine Prokaryotes Revealed Using Monthly Time Series Virome Analysis. mSystems 8 (1) (2023)
Ruixuan Zhang, Masaharu Takemura, Kazuyoshi Murata, Hiroyuki Ogata
"Mamonoviridae", a proposed new family of the phylum Nucleocytoviricota. Archives of virology 168 (3) (2023)
Kento Tominaga, Nana Ogawa-Haruki, Yosuke Nishimura, Hiroyasu Watai, Keigo Yamamoto, Hiroyuki Ogata, Takashi Yoshida
Prevalence of Viral Frequency-Dependent Infection in Coastal Marine Prokaryotes Revealed Using Monthly Time Series Virome Analysis. mSystems 8 (1) (2023)
Ruixuan Zhang, Masaharu Takemura, Kazuyoshi Murata, Hiroyuki Ogata
"Mamonoviridae", a proposed new family of the phylum Nucleocytoviricota. Archives of virology 168 (3) (2023)
Kento Tominaga, Nana Ogawa-Haruki, Yosuke Nishimura, Hiroyasu Watai, Keigo Yamamoto, Hiroyuki Ogata, Takashi Yoshida
Prevalence of Viral Frequency-Dependent Infection in Coastal Marine Prokaryotes Revealed Using Monthly Time Series Virome Analysis. mSystems 8 (1) (2023)
Kento Tominaga, Nana Ogawa-Haruki, Yosuke Nishimura, Hiroyasu Watai, Keigo Yamamoto, Hiroyuki Ogata, Takashi Yoshida
Prevalence of Viral Frequency-Dependent Infection in Coastal Marine Prokaryotes Revealed Using Monthly Time Series Virome Analysis. mSystems (2023)
Hongda Zhao, Ruixuan Zhang, Junyi Wu, Lingjie Meng, Yusuke Okazaki, Hiroyuki Hikida, Hiroyuki Ogata
A 1.5-Mb continuous endogenous viral region in the arbuscular mycorrhizal fungus Rhizophagus irregularis . Virus evolution 9 (2) (2023)
Hiroki Ban, Shinya Sato, Shinya Yoshikawa, Kazumasa Yamada, Yoji Nakamura, Mutsuo Ichinomiya, Naoki Sato, Romain Blanc-Mathieu, Hisashi Endo, Akira Kuwata, Hiroyuki Ogata
Genome analysis of Parmales, the sister group of diatoms, reveals the evolutionary specialization of diatoms from phago-mixotrophs to photoautotrophs. Communications biology 6 (1) (2023)
Hiroto Kaneko, Hisashi Endo, Nicolas Henry, Cédric Berney, Frédéric Mahé, Julie Poulain, Karine Labadie, Odette Beluche, Roy El Hourany, null null, Samuel Chaffron, Patrick Wincker, Ryosuke Nakamura, Lee Karp-Boss, Emmanuel S Boss, Chris Bowler, Colomban de Vargas, Kentaro Tomii, Hiroyuki Ogata
Predicting global distributions of eukaryotic plankton communities from satellite data. ISME communications 3 (1) (2023)
Kento Tominaga, Nana Ogawa-Haruki, Yosuke Nishimura, Hiroyasu Watai, Keigo Yamamoto, Hiroyuki Ogata, Takashi Yoshida
Prevalence of Viral Frequency-Dependent Infection in Coastal Marine Prokaryotes Revealed Using Monthly Time Series Virome Analysis. mSystems 8 (1) (2023)
Morgan Gaia, Lingjie Meng, Eric Pelletier, Patrick Forterre, Chiara Vanni, Antonio Fernandez-Guerra, Olivier Jaillon, Patrick Wincker, Hiroyuki Ogata, Mart Krupovic, Tom O Delmont
Mirusviruses link herpesviruses to giant viruses. Nature (2023)
Guillermo Dominguez-Huerta, Ahmed A Zayed, James M Wainaina, Jiarong Guo, Funing Tian, Akbar Adjie Pratama, Benjamin Bolduc, Mohamed Mohssen, Olivier Zablocki, Eric Pelletier, Erwan Delage, Adriana Alberti, Jean-Marc Aury, Quentin Carradec, Corinne Da Silva, Karine Labadie, Julie Poulain, null null, Chris Bowler, Damien Eveillard, Lionel Guidi, Eric Karsenti, J Thomas Beatty, Hiroyuki Ogata, Patrick Wincker, Alexander I Culley, Samuel Chaffron, Matthew B Sullivan
Diversity and ecological footprint of Global Ocean RNA viruses. Science (New York, N.Y.) 376 (6598) (2022)
Kazuko Miyazaki, Hitomi Watanabe, Genki Yoshikawa, Kenian Chen, Reiko Hidaka, Yuki Aitani, Kai Osawa, Rie Takeda, Yotaro Ochi, Shizue Tani-Ichi, Takuya Uehata, Osamu Takeuchi, Koichi Ikuta, Seishi Ogawa, Gen Kondoh, Yin C Lin, Hiroyuki Ogata, Masaki Miyazaki
The transcription factor E2A activates multiple enhancers that drive Rag expression in developing T and B cells. Science immunology 5 (51) (2022)
Chunting Liu, Jiangning Song, Hiroyuki Ogata, Tatsuya Akutsu
MSNet-4mC: learning effective multi-scale representations for identifying DNA N4-methylcytosine sites. Bioinformatics (Oxford, England) 38 (23) (2022)
Florian Prodinger, Hisashi Endo, Yoshihito Takano, Yanze Li, Kento Tominaga, Tatsuhiro Isozaki, Romain Blanc-Mathieu, Yasuhiro Gotoh, Tetsuya Hayashi, Etsunori Taniguchi, Keizo Nagasaki, Takashi Yoshida, Hiroyuki Ogata
Year-round dynamics of amplicon sequence variant communities differ among eukaryotes, Imitervirales and prokaryotes in a coastal ecosystem. FEMS microbiology ecology 97 (12) (2022)
Machiko Watari, Mariko Kato, Romain Blanc-Mathieu, Tomohiko Tsuge, Hiroyuki Ogata, Takashi Aoyama
Functional Differentiation among the Arabidopsis Phosphatidylinositol 4-Phosphate 5-Kinase Genes PIP5K1, PIP5K2 and PIP5K3. Plant & cell physiology 63 (5) (2022)
Violette Da Cunha, Morgan Gaia, Hiroyuki Ogata, Olivier Jaillon, Tom O Delmont, Patrick Forterre
Giant Viruses Encode Actin-Related Proteins. Molecular biology and evolution 39 (2) (2022)
Romain Blanc-Mathieu, Håkon Dahle, Antje Hofgaard, David Brandt, Hiroki Ban, Jörn Kalinowski, Hiroyuki Ogata, Ruth-Anne Sandaa
A persistent giant algal virus, with a unique morphology, encodes an unprecedented number of genes involved in energy metabolism. Journal of virology (2021)
Takeru Kawasaki, Hisashi Endo, Hiroyuki Ogata, Orawan Chatchawankanphanich, Takashi Yamada
The complete genomic sequence of the novel myovirus RP13 infecting Ralstonia solanacearum, the causative agent of bacterial wilt. Archives of virology 166 (2) (2021)
Ruixuan Zhang, Hisashi Endo, Masaharu Takemura, Hiroyuki Ogata
RNA Sequencing of Medusavirus Suggests Remodeling of the Host Nuclear Environment at an Early Infection Stage. Microbiology spectrum 9 (2) (2021)
Toshiharu Sakurai, Marco A De Velasco, Kazuko Sakai, Tomoyuki Nagai, Hiroki Nishiyama, Kentaro Hashimoto, Hirotsugu Uemura, Hiasto Kawakami, Kazuhiko Nakagawa, Hiroyuki Ogata, Kazuto Nishio, Masatoshi Kudo
Integrative analysis of gut microbiome and host transcriptomes reveals associations between treatment outcomes and immunotherapy-induced colitis. Molecular oncology (2021)
Lingjie Meng, Hisashi Endo, Romain Blanc-Mathieu, Samuel Chaffron, Rodrigo Hernández-Velázquez, Hiroto Kaneko, Hiroyuki Ogata
Quantitative Assessment of Nucleocytoplasmic Large DNA Virus and Host Interactions Predicted by Co-occurrence Analyses. mSphere 6 (2) (2021)
Silvia G Acinas, Pablo Sánchez, Guillem Salazar, Francisco Miguel Cornejo-Castillo, Marta Sebastián, Ramiro Logares, Marta Royo-Llonch, Lucas Paoli, Shinichi Sunagawa, Pascal Hingamp, Hiroyuki Ogata, Gipsi Lima-Mendez, Simon Roux, José M González, Jesús Maria Arrieta, Intikhab S Alam, Allan Kamau, Chris Bowler, Jeroen Raes, Stéphane Pesant, Peer Bork, Susana Agustí, Takashi Gojobori, Dolors Vaqué, Matthew B Sullivan, Carlos Pedrós-Alió, Ramon Massana, Carlos M Duarte, Josep M Gasol
Deep ocean metagenomes provide insight into the metabolic architecture of bathypelagic microbial communities. Communications biology 4 (1) (2021)
Koki Yoshida, Ruixuan Zhang, Kimberly G Garcia, Hisashi Endo, Yasuhiro Gotoh, Tetsuya Hayashi, Masaharu Takemura, Hiroyuki Ogata
Draft Genome Sequence of Medusavirus Stheno, Isolated from the Tatakai River of Uji, Japan. Microbiology resource announcements 10 (1) (2021)
Genki Yoshikawa, Kazuko Miyazaki, Hiroyuki Ogata, Masaki Miyazaki
The Evolution of Rag Gene Enhancers and Transcription Factor E and Id Proteins in the Adaptive Immune System. International journal of molecular sciences 22 (11) (2021)
Hisashi Endo, Romain Blanc-Mathieu, Yanze Li, Guillem Salazar, Nicolas Henry, Karine Labadie, Colomban de Vargas, Matthew B Sullivan, Chris Bowler, Patrick Wincker, Lee Karp-Boss, Shinichi Sunagawa, Hiroyuki Ogata
Biogeography of marine giant viruses reveals their interplay with eukaryotes and ecological functions. Nature ecology & evolution 4 (12) (2020)
Hiroki Nishiyama, Hisashi Endo, Romain Blanc-Mathieu, Hiroyuki Ogata
Ecological Structuring of Temperate Bacteriophages in the Inflammatory Bowel Disease-Affected Gut. Microorganisms 8 (11) (2020)
Florian Prodinger, Hisashi Endo, Yasuhiro Gotoh, Yanze Li, Daichi Morimoto, Kimiho Omae, Kento Tominaga, Romain Blanc-Mathieu, Yoshihito Takano, Tetsuya Hayashi, Keizo Nagasaki, Takashi Yoshida, Hiroyuki Ogata
An Optimized Metabarcoding Method for Mimiviridae. Microorganisms 8 (4) (2020)
Shinichi Sunagawa, Silvia G Acinas, Peer Bork, Chris Bowler, null null, Damien Eveillard, Gabriel Gorsky, Lionel Guidi, Daniele Iudicone, Eric Karsenti, Fabien Lombard, Hiroyuki Ogata, Stephane Pesant, Matthew B Sullivan, Patrick Wincker, Colomban de Vargas
Tara Oceans: towards global ocean ecosystems biology. Nature reviews. Microbiology 18 (8) (2020)
Yusuke Okazaki, Yosuke Nishimura, Takashi Yoshida, Hiroyuki Ogata, Shin-Ichi Nakano
Genome-resolved viral and cellular metagenomes revealed potential key virus-host interactions in a deep freshwater lake. Environmental microbiology 21 (12) (2019)
Yanze Li, Pascal Hingamp, Hiroyasu Watai, Hisashi Endo, Takashi Yoshida, Hiroyuki Ogata
Degenerate PCR Primers to Reveal the Diversity of Giant Viruses in Coastal Waters. Viruses 10 (9) (2018)
Takashi Yoshida, Yosuke Nishimura, Hiroyasu Watai, Nana Haruki, Daichi Morimoto, Hiroto Kaneko, Takashi Honda, Keigo Yamamoto, Pascal Hingamp, Yoshihiko Sako, Susumu Goto, Hiroyuki Ogata
Locality and diel cycling of viral production revealed by a 24 h time course cross-omics analysis in a coastal region of Japan. The ISME journal 12 (5) (2018)
Yugo Shimizu, Hiroyuki Ogata, Susumu Goto
Type III Polyketide Synthases: Functional Classification and Phylogenomics. Chembiochem : a European journal of chemical biology 18 (1) (2016)
Magali Lescot, Pascal Hingamp, Kenji K Kojima, Emilie Villar, Sarah Romac, Alaguraj Veluchamy, Martine Boccara, Olivier Jaillon, Daniele Iudicone, Chris Bowler, Patrick Wincker, Jean-Michel Claverie, Hiroyuki Ogata
Reverse transcriptase genes are highly abundant and transcriptionally active in marine plankton assemblages. The ISME journal 10 (5) (2015)

Hiroyuki Ogata.css-eqlu8i{font-size:small;padding-left:4px;}

Publication Activity (10 Years)

Top Topics

Top Venues

Hiroyuki Ogata