Koji Yahara

Loop profile ORCID

Publication Activity (10 Years)

Years Active: 2017-2024
Publications (10 Years): 26

Top Venues

Nature communications

Antimicrobial agents and chemotherapy

PloS one

Access microbiology

National Institute of Infectious Diseases

This page only lists publications with an associated author ORCID identifier.

Affiliation History

National Institute of Infectious Diseases Apr 01 2019

Japan

Group Leader :: Antimicrobial Resistance Research Center

National Institute of Infectious Diseases Apr 01 2016

Japan

Senior Investigator :: Antimicrobial Resistance Research Center

Kurume University Apr 01 2014 - Mar 31 2016

Japan

Lecturer

Publications

Hiroko Yahara, Souichi Yanamoto, Miho Takahashi, Yuji Hamada, Takuya Asaka, Yoshimasa Kitagawa, Kuniyasu Moridera, Kazuma Noguchi, Yutaka Maruoka, Koji Yahara
Shotgun metagenomic analysis of saliva microbiome suggests Mogibacterium as a factor associated with chronic bacterial osteomyelitis. PloS one 19 (5) (2024)
Sadao Aoki, Hiroko Yahara, Ryoma Nakao, Osamu Tsuzukibashi, Koji Yahara
Development of selective isolation media for detecting the genera Actinomyces and Schaalia from oral specimens containing indigenous bacteria. Access microbiology 6 (5) (2024)
Hirokazu Yano, Wataru Hayashi, Sayoko Kawakami, Sadao Aoki, Eiko Anzai, Hui Zuo, Norikazu Kitamura, Aki Hirabayashi, Toshiki Kajihara, Shizuo Kayama, Yo Sugawara, Koji Yahara, Motoyuki Sugai
Nationwide genome surveillance of carbapenem-resistant Pseudomonas aeruginosa in Japan. Antimicrobial agents and chemotherapy (2024)
Shizuo Kayama, Koji Yahara, Yo Sugawara, Sayoko Kawakami, Kohei Kondo, Hui Zuo, Shoko Kutsuno, Norikazu Kitamura, Aki Hirabayashi, Toshiki Kajihara, Hitomi Kurosu, Liansheng Yu, Masato Suzuki, Junzo Hisatsune, Motoyuki Sugai
Author Correction: National genomic surveillance integrating standardized quantitative susceptibility testing clarifies antimicrobial resistance in Enterobacterales. Nature communications 15 (1) (2024)
Sadao Aoki, Hiroko Yahara, Ryoma Nakao, Osamu Tsuzukibashi, Koji Yahara
Development of selective isolation media for detecting the genera Actinomyces and Schaalia from oral specimens containing indigenous bacteria. Access microbiology 6 (5) (2024)
Hiroko Yahara, Souichi Yanamoto, Miho Takahashi, Yuji Hamada, Takuya Asaka, Yoshimasa Kitagawa, Kuniyasu Moridera, Kazuma Noguchi, Yutaka Maruoka, Koji Yahara
Shotgun metagenomic analysis of saliva microbiome suggests Mogibacterium as a factor associated with chronic bacterial osteomyelitis. PloS one 19 (5) (2024)
Hirokazu Yano, Wataru Hayashi, Sayoko Kawakami, Sadao Aoki, Eiko Anzai, Hui Zuo, Norikazu Kitamura, Aki Hirabayashi, Toshiki Kajihara, Shizuo Kayama, Yo Sugawara, Koji Yahara, Motoyuki Sugai
Nationwide genome surveillance of carbapenem-resistant Pseudomonas aeruginosa in Japan. Antimicrobial agents and chemotherapy 68 (5) (2024)
Hirokazu Yano, Wataru Hayashi, Sayoko Kawakami, Sadao Aoki, Eiko Anzai, Hui Zuo, Norikazu Kitamura, Aki Hirabayashi, Toshiki Kajihara, Shizuo Kayama, Yo Sugawara, Koji Yahara, Motoyuki Sugai
Nationwide genome surveillance of carbapenem-resistant Pseudomonas aeruginosa in Japan. Antimicrobial agents and chemotherapy 68 (5) (2024)
Shizuo Kayama, Koji Yahara, Yo Sugawara, Sayoko Kawakami, Kohei Kondo, Hui Zuo, Shoko Kutsuno, Norikazu Kitamura, Aki Hirabayashi, Toshiki Kajihara, Hitomi Kurosu, Liansheng Yu, Masato Suzuki, Junzo Hisatsune, Motoyuki Sugai
Author Correction: National genomic surveillance integrating standardized quantitative susceptibility testing clarifies antimicrobial resistance in Enterobacterales. Nature communications 15 (1) (2024)
Hirokazu Yano, Wataru Hayashi, Sayoko Kawakami, Sadao Aoki, Eiko Anzai, Hui Zuo, Norikazu Kitamura, Aki Hirabayashi, Toshiki Kajihara, Shizuo Kayama, Yo Sugawara, Koji Yahara, Motoyuki Sugai
Nationwide genome surveillance of carbapenem-resistant Pseudomonas aeruginosa in Japan. Antimicrobial agents and chemotherapy 68 (5) (2024)
Yumiko Hosaka, Yuichi Muraki, Toshiki Kajihara, Sayoko Kawakami, Aki Hirabayashi, Masahiro Shimojima, Hiroki Ohge, Motoyuki Sugai, Koji Yahara
Antimicrobial use and combination of resistance phenotypes in bacteraemic Escherichia coli in primary care: a study based on Japanese national data in 2018. The Journal of antimicrobial chemotherapy (2023)
Shizuo Kayama, Koji Yahara, Yo Sugawara, Sayoko Kawakami, Kohei Kondo, Hui Zuo, Shoko Kutsuno, Norikazu Kitamura, Aki Hirabayashi, Toshiki Kajihara, Hitomi Kurosu, Liansheng Yu, Masato Suzuki, Junzo Hisatsune, Motoyuki Sugai
National genomic surveillance integrating standardized quantitative susceptibility testing clarifies antimicrobial resistance in Enterobacterales. Nature communications 14 (1) (2023)
Harry A Thorpe, Elise Tourrette, Koji Yahara, Filipa F Vale, Siqi Liu, Mónica Oleastro, Teresa Alarcon, Tsachi-Tsadok Perets, Saeid Latifi-Navid, Ari Fahrial Syam, Beatriz Martinez-Gonzalez, Ioannis Karayiannis, Timokratis Karamitros, Dionyssios Nicholas Sgouras, Wael Elamin, Ben Pascoe, Samuel K Sheppard, Jukka Ronkainen, Pertti Aro, Lars Engstrand, Lars Agreus, Sebastian Suerbaum, Kaisa Thorell, Daniel Falush
Author Correction: Repeated out-of-Africa expansions of Helicobacter pylori driven by replacement of deleterious mutations. Nature communications 14 (1) (2023)
Harry A Thorpe, Elise Tourrette, Koji Yahara, Filipa F Vale, Siqi Liu, Mónica Oleastro, Teresa Alarcon, Tsachi-Tsadok Perets, Saeid Latifi-Navid, Ari Fahrial Syam, Beatriz Martinez-Gonzalez, Ioannis Karayiannis, Timokratis Karamitros, Dionyssios Nicholas Sgouras, Wael Elamin, Ben Pascoe, Samuel K Sheppard, Jukka Ronkainen, Pertti Aro, Lars Engstrand, Lars Agreus, Sebastian Suerbaum, Kaisa Thorell, Daniel Falush
Author Correction: Repeated out-of-Africa expansions of Helicobacter pylori driven by replacement of deleterious mutations. Nature communications 14 (1) (2023)
Evangelos Mourkas, Koji Yahara, Sion C Bayliss, Jessica K Calland, Håkan Johansson, Leonardos Mageiros, Zilia Y Muñoz-Ramírez, Grant Futcher, Guillaume Méric, Matthew D Hitchings, Santiago Sandoval-Motta, Javier Torres, Keith A Jolley, Martin Christopher James Maiden, Patrik Ellström, Jonas Waldenström, Ben Pascoe, Samuel K Sheppard
Host ecology regulates interspecies recombination in bacteria of the genus Campylobacter . eLife 11 (2022)
Harry A Thorpe, Elise Tourrette, Koji Yahara, Filipa F Vale, Siqi Liu, Mónica Oleastro, Teresa Alarcon, Tsachi-Tsadok Perets, Saeid Latifi-Navid, Ari Fahrial Syam, Beatriz Martinez-Gonzalez, Ioannis Karayiannis, Timokratis Karamitros, Dionyssios Nicholas Sgouras, Wael Elamin, Ben Pascoe, Samuel K Sheppard, Jukka Ronkainen, Pertti Aro, Lars Engstrand, Lars Agreus, Sebastian Suerbaum, Kaisa Thorell, Daniel Falush
Repeated out-of-Africa expansions of Helicobacter pylori driven by replacement of deleterious mutations. Nature communications 13 (1) (2022)
Leonardos Mageiros, Guillaume Méric, Sion C Bayliss, Johan Pensar, Ben Pascoe, Evangelos Mourkas, Jessica K Calland, Koji Yahara, Susan Murray, Thomas S Wilkinson, Lisa K Williams, Matthew D Hitchings, Jonathan Porter, Kirsty Kemmett, Edward J Feil, Keith A Jolley, Nicola J Williams, Jukka Corander, Samuel K Sheppard
Author Correction: Genome evolution and the emergence of pathogenicity in avian Escherichia coli. Nature communications 12 (1) (2021)
Leonardos Mageiros, Guillaume Méric, Sion C Bayliss, Johan Pensar, Ben Pascoe, Evangelos Mourkas, Jessica K Calland, Koji Yahara, Susan Murray, Thomas S Wilkinson, Lisa K Williams, Matthew D Hitchings, Jonathan Porter, Kirsty Kemmett, Edward J Feil, Keith A Jolley, Nicola J Williams, Jukka Corander, Samuel K Sheppard
Genome evolution and the emergence of pathogenicity in avian Escherichia coli. Nature communications 12 (1) (2021)
Koji Yahara, Masato Suzuki, Aki Hirabayashi, Wataru Suda, Masahira Hattori, Yutaka Suzuki, Yusuke Okazaki
Long-read metagenomics using PromethION uncovers oral bacteriophages and their interaction with host bacteria. Nature communications 12 (1) (2021)
Koji Yahara, Kevin C Ma, Tatum D Mortimer, Ken Shimuta, Shu-Ichi Nakayama, Aki Hirabayashi, Masato Suzuki, Michio Jinnai, Hitomi Ohya, Toshiro Kuroki, Yuko Watanabe, Mitsuru Yasuda, Takashi Deguchi, Vegard Eldholm, Odile B Harrison, Martin C J Maiden, Yonatan H Grad, Makoto Ohnishi
Emergence and evolution of antimicrobial resistance genes and mutations in Neisseria gonorrhoeae. Genome medicine 13 (1) (2021)
Kota Asakura, Takuya Azechi, Hiroshi Sasano, Hidehito Matsui, Hideaki Hanaki, Motoyasu Miyazaki, Tohru Takata, Miwa Sekine, Tomoiku Takaku, Tomonori Ochiai, Norio Komatsu, Keigo Shibayama, Yuki Katayama, Koji Yahara
Rapid and easy detection of low-level resistance to vancomycin in methicillin-resistant Staphylococcus aureus by matrix-assisted laser desorption ionization time-of-flight mass spectrometry. PloS one 13 (3) (2018)
Jan P Meier-Kolthoff, Jumpei Uchiyama, Hiroko Yahara, A David Páez-Espino, Koji Yahara
Investigation of recombination-intense viral groups and their genes in the Earth's virome. Scientific reports 8 (1) (2018)
Annemieke Smet, Koji Yahara, Mirko Rossi, Alfred Tay, Steffen Backert, Ensser Armin, James G Fox, Bram Flahou, Richard Ducatelle, Freddy Haesebrouck, Jukka Corander
Macroevolution of gastric Helicobacter species unveils interspecies admixture and time of divergence. The ISME journal 12 (10) (2018)
Kana Hashi, Chihiro Imai, Koji Yahara, Kamrunnesa Tahmina, Takeru Hayashi, Takeshi Azuma, Takako Miyabe-Nishiwaki, Hideyuki Sato, Masao Matsuoka, Sachi Niimi, Munehiro Okamoto, Masanori Hatakeyama
Evaluating the origin and virulence of a Helicobacter pylori cagA-positive strain isolated from a non-human primate. Scientific reports 8 (1) (2018)
Gang Zhang, Sébastien Olivier Leclercq, Jingjing Tian, Chao Wang, Koji Yahara, Guomin Ai, Shuangjiang Liu, Jie Feng
A new subclass of intrinsic aminoglycoside nucleotidyltransferases, ANT(3")-II, is horizontally transferred among Acinetobacter spp. by homologous recombination. PLoS genetics 13 (2) (2017)
Kaisa Thorell, Koji Yahara, Elvire Berthenet, Daniel John Lawson, Jane Mikhail, Ikuko Kato, Alfonso Méndez-Tenorio, Cosmeri Rizzato, María Mercedes Bravo, Rumiko Suzuki, Yoshio Yamaoka, Javier Torres, Samuel K Sheppard, Daniel Falush
Rapid evolution of distinct Helicobacter pylori subpopulations in the Americas. PLoS genetics 13 (2) (2017)

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Publication Activity (10 Years)

Top Topics

Top Venues

Koji Yahara