Michael R Shortreed (Leah V Schaffer, Leah Schaffer)

ORCID

Publication Activity (10 Years)

Years Active: 2017-2024
Publications (10 Years): 18

Top Venues

Journal of proteome research

Proteomics

bioRxiv : the preprint server for biology

Analytical chemistry

Creighton University (BSC)

This page only lists publications with an associated author ORCID identifier.

Education History

Creighton University

United States

BSC :: Chemistry

Publications

Austin V Carr, Nicholas E Bollis, John G Pavek, Michael R Shortreed, Lloyd M Smith
Spectral averaging with outlier rejection algorithms to increase identifications in top-down proteomics. Proteomics 24 (8) (2024)
Austin V Carr, Nicholas E Bollis, John G Pavek, Michael R Shortreed, Lloyd M Smith
Spectral averaging with outlier rejection algorithms to increase identifications in top-down proteomics. Proteomics 24 (8) (2024)
Austin V Carr, Nicholas E Bollis, John G Pavek, Michael R Shortreed, Lloyd M Smith
Spectral averaging with outlier rejection algorithms to increase identifications in top-down proteomics. Proteomics (2024)
Timothy W Clark, Jillian Mohan, Michael R Shortreed, Kirsten Obernier, Mohammad Sadnan Al Manir, Christopher P Churas, Amir Dailamy, Yesh Doctor, Antoine Forget, Jan Niklas Hansen, Mengzhou Hu, Joanna Lenkiewicz, Maxwell Adam Levinson, Charlotte Marquez, Sami Nourreddine, Justin Niestroy, Dexter Pratt, Gege Qian, Swathi Thaker, Jean-Christophe Bélisle-Pipon, Cynthia A Brandt, Jake Chen, Ying Ding, Samah Jamal Fodeh, Nevan J Krogan, Emma Lundberg, Prashant Mali, Pamela Payne-Foster, Sarah Jane Ratcliffe, Vardit Ravitsky, Andrej Sali, Wade L Schulz, Trey Ideker
Cell Maps for Artificial Intelligence: AI-Ready Maps of Human Cell Architecture from Disease-Relevant Cell Lines. bioRxiv : the preprint server for biology (2024)
Timothy W Clark, Jillian Mohan, Michael R Shortreed, Kirsten Obernier, Mohammad Sadnan Al Manir, Christopher P Churas, Amir Dailamy, Yesh Doctor, Antoine Forget, Jan Niklas Hansen, Mengzhou Hu, Joanna Lenkiewicz, Maxwell Adam Levinson, Charlotte Marquez, Sami Nourreddine, Justin Niestroy, Dexter Pratt, Gege Qian, Swathi Thaker, Jean-Christophe Bélisle-Pipon, Cynthia A Brandt, Jake Chen, Ying Ding, Samah Jamal Fodeh, Nevan J Krogan, Emma Lundberg, Prashant Mali, Pamela Payne-Foster, Sarah Jane Ratcliffe, Vardit Ravitsky, Andrej Sali, Wade L Schulz, Trey Ideker
Cell Maps for Artificial Intelligence: AI-Ready Maps of Human Cell Architecture from Disease-Relevant Cell Lines. bioRxiv : the preprint server for biology (2024)
Austin V Carr, Nicholas E Bollis, John G Pavek, Michael R Shortreed, Lloyd M Smith
Spectral averaging with outlier rejection algorithms to increase identifications in top-down proteomics. Proteomics 24 (8) (2024)
Timothy W Clark, Jillian Mohan, Michael R Shortreed, Kirsten Obernier, Mohammad Sadnan Al Manir, Christopher P Churas, Amir Dailamy, Yesh Doctor, Antoine Forget, Jan Niklas Hansen, Mengzhou Hu, Joanna Lenkiewicz, Maxwell Adam Levinson, Charlotte Marquez, Sami Nourreddine, Justin Niestroy, Dexter Pratt, Gege Qian, Swathi Thaker, Jean-Christophe Bélisle-Pipon, Cynthia A Brandt, Jake Chen, Ying Ding, Samah Jamal Fodeh, Nevan J Krogan, Emma Lundberg, Prashant Mali, Pamela Payne-Foster, Sarah Jane Ratcliffe, Vardit Ravitsky, Andrej Sali, Wade L Schulz, Trey Ideker
Cell Maps for Artificial Intelligence: AI-Ready Maps of Human Cell Architecture from Disease-Relevant Cell Lines. bioRxiv : the preprint server for biology (2024)
Sarah N Wright, Scott Colton, Michael R Shortreed, Rudolf T Pillich, Christopher P Churas, Dexter Pratt, Trey Ideker
State of the Interactomes: an evaluation of molecular networks for generating biological insights. bioRxiv : the preprint server for biology (2024)
Austin V Carr, Nicholas E Bollis, John G Pavek, Michael R Shortreed, Lloyd M Smith
Spectral averaging with outlier rejection algorithms to increase identifications in top-down proteomics. Proteomics (2024)
Michael R Shortreed, Robert J Millikin, Lei Lu, Zach Rolfs, Rachel M Miller, Michael R Shortreed, Brian L Frey, Lloyd M Smith
Binary Classifier for Computing Posterior Error Probabilities in MetaMorpheus. Journal of proteome research 20 (4) (2021)
Chad R Weisbrod, Lissa C Anderson, Christopher L Hendrickson, Michael R Shortreed, Michael R Shortreed, Lloyd M Smith, Jeffrey Shabanowitz, Donald F Hunt
Advanced Strategies for Proton-Transfer Reactions Coupled with Parallel Ion Parking on a 21 T FT-ICR MS for Intact Protein Analysis. Analytical chemistry 93 (26) (2021)
Michael R Shortreed, Lissa C Anderson, David S Butcher, Michael R Shortreed, Rachel M Miller, Caitlin Pavelec, Lloyd M Smith
Construction of Human Proteoform Families from 21 Tesla Fourier Transform Ion Cyclotron Resonance Mass Spectrometry Top-Down Proteomic Data. Journal of proteome research 20 (1) (2020)
Michael R Shortreed, Robert J Millikin, Michael R Shortreed, Mark Scalf, Lloyd M Smith
Improving Proteoform Identifications in Complex Systems Through Integration of Bottom-Up and Top-Down Data. Journal of proteome research 19 (8) (2020)
Yunxiang Dai, Katherine E Buxton, Michael R Shortreed, Rachel M Miller, Robert J Millikin, Mark Scalf, Brian L Frey, Michael R Shortreed, Lloyd M Smith
Constructing Human Proteoform Families Using Intact-Mass and Top-Down Proteomics with a Multi-Protease Global Post-Translational Modification Discovery Database. Journal of proteome research 18 (10) (2019)
Michael R Shortreed, Trisha Tucholski, Michael R Shortreed, Ying Ge, Lloyd M Smith
Intact-Mass Analysis Facilitating the Identification of Large Human Heart Proteoforms. Analytical chemistry 91 (17) (2019)
Michael R Shortreed, Jarred W Rensvold, Michael R Shortreed, Anthony J Cesnik, Adam Jochem, Mark Scalf, Brian L Frey, David J Pagliarini, Lloyd M Smith
Identification and Quantification of Murine Mitochondrial Proteoforms Using an Integrated Top-Down and Intact-Mass Strategy. Journal of proteome research 17 (10) (2018)
Anthony J Cesnik, Michael R Shortreed, Michael R Shortreed, Rachel A Knoener, Brian L Frey, Mark Scalf, Stefan K Solntsev, Yunxiang Dai, Audrey P Gasch, Lloyd M Smith
Proteoform Suite: Software for Constructing, Quantifying, and Visualizing Proteoform Families. Journal of proteome research 17 (1) (2017)
Michael R Shortreed, Michael R Shortreed, Anthony J Cesnik, Brian L Frey, Stefan K Solntsev, Mark Scalf, Lloyd M Smith
Expanding Proteoform Identifications in Top-Down Proteomic Analyses by Constructing Proteoform Families. Analytical chemistry 90 (2) (2017)

Michael R Shortreed.css-eqlu8i{font-size:small;padding-left:4px;} (Leah V Schaffer, Leah Schaffer)

Publication Activity (10 Years)

Top Topics

Top Venues

Michael R Shortreed (Leah V Schaffer, Leah Schaffer)