Nevan J Krogan (Nevan Krogan)

ORCID

Publication Activity (10 Years)

Years Active: 2018-2024
Publications (10 Years): 126

Top Venues

bioRxiv : the preprint server for biology

Nature communications

mBio

Science (New York, N.Y.)

This page only lists publications with an associated author ORCID identifier.

Publications

Rishi Kumar Nageshan, Raquel Ortega, Nevan J Krogan, Julia Promisel Cooper
Fate of telomere entanglements is dictated by the timing of anaphase midregion nuclear envelope breakdown. Nature communications 15 (1) (2024)
Benjamin J Polacco, Braden T Lobingier, Emily E Blythe, Nohely Abreu, Prachi Khare, Matthew K Howard, Alberto J Gonzalez-Hernandez, Jiewei Xu, Qiongyu Li, Brandon Novy, Zun Zar Chi Naing, Brian K Shoichet, Willow Coyote-Maestas, Joshua Levitz, Nevan J Krogan, Mark Von Zastrow, Ruth Hüttenhain
Profiling the proximal proteome of the activated μ-opioid receptor. Nature chemical biology 20 (9) (2024)
Clara M Herrera, Eleanor McMahon, Danielle L Swaney, Jessica Sherry, Khavong Pha, Kathleen Adams-Boone, Jeffrey R Johnson, Nevan J Krogan, Meredith Stevers, David Solomon, Cherilyn A Elwell, Joanne N Engel
The Chlamydia trachomatis Inc Tri1 interacts with TRAF7 to displace native TRAF7 interacting partners. Microbiology spectrum 12 (7) (2024)
Benjamin J Polacco, Braden T Lobingier, Emily E Blythe, Nohely Abreu, Prachi Khare, Matthew K Howard, Alberto J Gonzalez-Hernandez, Jiewei Xu, Qiongyu Li, Brandon Novy, Zun Zar Chi Naing, Brian K Shoichet, Willow Coyote-Maestas, Joshua Levitz, Nevan J Krogan, Mark Von Zastrow, Ruth Hüttenhain
Profiling the proximal proteome of the activated μ-opioid receptor. Nature chemical biology (2024)
Xiaofang Zhong, Qiongyu Li, Benjamin J Polacco, Trupti Patil, Aaron Marley, Helene Foussard, Prachi Khare, Rasika Vartak, Jiewei Xu, Jeffrey F DiBerto, Bryan L Roth, Manon Eckhardt, Mark Von Zastrow, Nevan J Krogan, Ruth Hüttenhain
A proximity proteomics pipeline with improved reproducibility and throughput. Molecular systems biology (2024)
Rahul K Suryawanshi, Priyadarshini Jaishankar, Galen J Correy, Moira M Rachman, Patrick C O'Leary, Taha Y Taha, Francisco J Zapatero-Belinchón, Maria McCavitt-Malvido, Yagmur Umay Doruk, Maisie G V Stevens, Morgan E Diolati, Manasi P Jogalekar, Alicia L Richards, Mauricio Montano, Julia Rosecrans, Michael A Matthay, Takaya Togo, Ryan L Gonciarz, Saumya Gopalkrishnan, R Jeffrey Neitz, Nevan J Krogan, Danielle L Swaney, Brian K Shoichet, Melanie M Ott, Adam R Renslo, Alan Ashworth, Brian K Shoichet
The Mac1 ADP-ribosylhydrolase is a Therapeutic Target for SARS-CoV-2. bioRxiv : the preprint server for biology (2024)
Siyuan John Liu, Tim J Casey-Clyde, Nam Woo Cho, Jason Swinderman, Melike Pekmezci, Mark C Dougherty, Kyla Foster, William C Chen, Javier E Villanueva-Meyer, Danielle L Swaney, Harish N Vasudevan, Abrar Choudhury, Joanna Pak, Jonathan D Breshears, Ursula E Lang, Charlotte D Eaton, Kamir J Hiam-Galvez, Erica Stevenson, Kuei-Ho Chen, Brian V Lien, David Wu, Steve E Braunstein, Penny K Sneed, Stephen T Magill, Daniel Lim, Michael W McDermott, Mitchel S Berger, Arie Perry, Nevan J Krogan, Marlan R Hansen, Matthew H Spitzer, Luke A Gilbert, Philip V Theodosopoulos, David R Raleigh
Epigenetic reprogramming shapes the cellular landscape of schwannoma. Nature communications 15 (1) (2024)
Siyuan John Liu, Tim J Casey-Clyde, Nam Woo Cho, Jason Swinderman, Melike Pekmezci, Mark C Dougherty, Kyla Foster, William C Chen, Javier E Villanueva-Meyer, Danielle L Swaney, Harish N Vasudevan, Abrar Choudhury, Joanna Pak, Jonathan D Breshears, Ursula E Lang, Charlotte D Eaton, Kamir J Hiam-Galvez, Erica Stevenson, Kuei-Ho Chen, Brian V Lien, David Wu, Steve E Braunstein, Penny K Sneed, Stephen T Magill, Daniel Lim, Michael W McDermott, Mitchel S Berger, Arie Perry, Nevan J Krogan, Marlan R Hansen, Matthew H Spitzer, Luke A Gilbert, Philip V Theodosopoulos, David R Raleigh
Epigenetic reprogramming shapes the cellular landscape of schwannoma. Nature communications 15 (1) (2024)
Lois M Kelly, Justine C Rutter, Kevin H Lin, Frank Ling, Matthieu Duchmann, Emmanuelle Latour, Nadia Arang, Hélène Pasquer, Duong Ho Nhat, Juliette Charles, Shane T Killarney, Hazel Xiaohui Ang, Federica Namor, Cécile Culeux, Berangere Lombard, Damarys Loew, Danielle L Swaney, Nevan J Krogan, Luc Brunel, Élodie Carretero, Pascal Verdié, Muriel Amblard, Sofiane Fodil, Tony Huynh, Marie Sébert, Lionel Ades, Emmanuel Raffoux, Nina Fenouille, Raphaël A Itzykson, Camille Lobry, Lina Benajiba, Antoine Forget, Anthony R Martin, Kris C Wood, Alexandre Puissant
Targeting a lineage-specific PI3Kɣ-Akt signaling module in acute myeloid leukemia using a heterobifunctional degrader molecule. Nature cancer 5 (7) (2024)
Lois M Kelly, Justine C Rutter, Kevin H Lin, Frank Ling, Matthieu Duchmann, Emmanuelle Latour, Nadia Arang, Hélène Pasquer, Duong Ho Nhat, Juliette Charles, Shane T Killarney, Hazel Xiaohui Ang, Federica Namor, Cécile Culeux, Berangere Lombard, Damarys Loew, Danielle L Swaney, Nevan J Krogan, Luc Brunel, Élodie Carretero, Pascal Verdié, Muriel Amblard, Sofiane Fodil, Tony Huynh, Marie Sébert, Lionel Ades, Emmanuel Raffoux, Nina Fenouille, Raphaël A Itzykson, Camille Lobry, Lina Benajiba, Antoine Forget, Anthony R Martin, Kris C Wood, Alexandre Puissant
Targeting a lineage-specific PI3Kɣ-Akt signaling module in acute myeloid leukemia using a heterobifunctional degrader molecule. Nature cancer (2024)
Clara M Herrera, Eleanor McMahon, Danielle L Swaney, Jessica Sherry, Khavong Pha, Kathleen Adams-Boone, Jeffrey R Johnson, Nevan J Krogan, Meredith Stevers, David Solomon, Cherilyn A Elwell, Joanne N Engel
The Chlamydia trachomatis Inc Tri1 interacts with TRAF7 to displace native TRAF7 interacting partners. Microbiology spectrum 12 (7) (2024)
Siyuan John Liu, Tim J Casey-Clyde, Nam Woo Cho, Jason Swinderman, Melike Pekmezci, Mark C Dougherty, Kyla Foster, William C Chen, Javier E Villanueva-Meyer, Danielle L Swaney, Harish N Vasudevan, Abrar Choudhury, Joanna Pak, Jonathan D Breshears, Ursula E Lang, Charlotte D Eaton, Kamir J Hiam-Galvez, Erica Stevenson, Kuei-Ho Chen, Brian V Lien, David Wu, Steve E Braunstein, Penny K Sneed, Stephen T Magill, Daniel Lim, Michael W McDermott, Mitchel S Berger, Arie Perry, Nevan J Krogan, Marlan R Hansen, Matthew H Spitzer, Luke A Gilbert, Philip V Theodosopoulos, David R Raleigh
Epigenetic reprogramming shapes the cellular landscape of schwannoma. Nature communications 15 (1) (2024)
Ujjwal Rathore, Paige Haas, Vigneshwari Easwar Kumar, Joseph Hiatt, Kelsey M Haas, Mehdi Bouhaddou, Danielle L Swaney, Erica Stevenson, Lorena Zuliani-Alvarez, Michael J McGregor, Autumn Turner-Groth, Charles Ochieng' Olwal, Yaw Bediako, Hannes Braberg, Margaret Soucheray, Melanie M Ott, Manon Eckhardt, Judd F Hultquist, Alexander Marson, Robyn M Kaake, Nevan J Krogan
CRISPR-Cas9 screen of E3 ubiquitin ligases identifies TRAF2 and UHRF1 as regulators of HIV latency in primary human T cells. mBio 15 (4) (2024)
Siyuan John Liu, Tim J Casey-Clyde, Nam Woo Cho, Jason Swinderman, Melike Pekmezci, Mark C Dougherty, Kyla Foster, William C Chen, Javier E Villanueva-Meyer, Danielle L Swaney, Harish N Vasudevan, Abrar Choudhury, Joanna Pak, Jonathan D Breshears, Ursula E Lang, Charlotte D Eaton, Kamir J Hiam-Galvez, Erica Stevenson, Kuei-Ho Chen, Brian V Lien, David Wu, Steve E Braunstein, Penny K Sneed, Stephen T Magill, Daniel Lim, Michael W McDermott, Mitchel S Berger, Arie Perry, Nevan J Krogan, Marlan R Hansen, Matthew H Spitzer, Luke A Gilbert, Philip V Theodosopoulos, David R Raleigh
Epigenetic reprogramming shapes the cellular landscape of schwannoma. Nature communications 15 (1) (2024)
Benjamin J Polacco, Braden T Lobingier, Emily E Blythe, Nohely Abreu, Prachi Khare, Matthew K Howard, Alberto J Gonzalez-Hernandez, Jiewei Xu, Qiongyu Li, Brandon Novy, Zun Zar Chi Naing, Brian K Shoichet, Willow Coyote-Maestas, Joshua Levitz, Nevan J Krogan, Mark Von Zastrow, Ruth Hüttenhain
Profiling the proximal proteome of the activated μ-opioid receptor. Nature chemical biology 20 (9) (2024)
Ujjwal Rathore, Paige Haas, Vigneshwari Easwar Kumar, Joseph Hiatt, Kelsey M Haas, Mehdi Bouhaddou, Danielle L Swaney, Erica Stevenson, Lorena Zuliani-Alvarez, Michael J McGregor, Autumn Turner-Groth, Charles Ochieng' Olwal, Yaw Bediako, Hannes Braberg, Margaret Soucheray, Melanie M Ott, Manon Eckhardt, Judd F Hultquist, Alexander Marson, Robyn M Kaake, Nevan J Krogan
CRISPR-Cas9 screen of E3 ubiquitin ligases identifies TRAF2 and UHRF1 as regulators of HIV latency in primary human T cells. mBio (2024)
Lois M Kelly, Justine C Rutter, Kevin H Lin, Frank Ling, Matthieu Duchmann, Emmanuelle Latour, Nadia Arang, Hélène Pasquer, Duong Ho Nhat, Juliette Charles, Shane T Killarney, Hazel Xiaohui Ang, Federica Namor, Cécile Culeux, Berangere Lombard, Damarys Loew, Danielle L Swaney, Nevan J Krogan, Luc Brunel, Élodie Carretero, Pascal Verdié, Muriel Amblard, Sofiane Fodil, Tony Huynh, Marie Sébert, Lionel Ades, Emmanuel Raffoux, Nina Fenouille, Raphaël A Itzykson, Camille Lobry, Lina Benajiba, Antoine Forget, Anthony R Martin, Kris C Wood, Alexandre Puissant
Targeting a lineage-specific PI3Kɣ-Akt signaling module in acute myeloid leukemia using a heterobifunctional degrader molecule. Nature cancer (2024)
Gwendolyn M Jang, Arun Kumar Annan Sudarsan, Arzhang Shayeganmehr, Erika Prando Munhoz, Reanna Lao, Amit Gaba, Milaid Granadillo Rodríguez, Robin P Love, Benjamin J Polacco, Yuan Zhou, Nevan J Krogan, Robyn M Kaake, Linda Chelico
Protein interaction map of APOBEC3 enzyme family reveals deamination-independent role in cellular function. bioRxiv : the preprint server for biology (2024)
Timothy W Clark, Jillian Mohan, Michael R Shortreed, Kirsten Obernier, Mohammad Sadnan Al Manir, Christopher P Churas, Amir Dailamy, Yesh Doctor, Antoine Forget, Jan Niklas Hansen, Mengzhou Hu, Joanna Lenkiewicz, Maxwell Adam Levinson, Charlotte Marquez, Sami Nourreddine, Justin Niestroy, Dexter Pratt, Gege Qian, Swathi Thaker, Jean-Christophe Bélisle-Pipon, Cynthia A Brandt, Jake Chen, Ying Ding, Samah Jamal Fodeh, Nevan J Krogan, Emma Lundberg, Prashant Mali, Pamela Payne-Foster, Sarah Jane Ratcliffe, Vardit Ravitsky, Andrej Sali, Wade L Schulz, Trey Ideker
Cell Maps for Artificial Intelligence: AI-Ready Maps of Human Cell Architecture from Disease-Relevant Cell Lines. bioRxiv : the preprint server for biology (2024)
Rahul K Suryawanshi, Priyadarshini Jaishankar, Galen J Correy, Moira M Rachman, Patrick C O'Leary, Taha Y Taha, Francisco J Zapatero-Belinchón, Maria McCavitt-Malvido, Yagmur Umay Doruk, Maisie G V Stevens, Morgan E Diolati, Manasi P Jogalekar, Alicia L Richards, Mauricio Montano, Julia Rosecrans, Michael A Matthay, Takaya Togo, Ryan L Gonciarz, Saumya Gopalkrishnan, R Jeffrey Neitz, Nevan J Krogan, Danielle L Swaney, Brian K Shoichet, Melanie M Ott, Adam R Renslo, Alan Ashworth, Brian K Shoichet
The Mac1 ADP-ribosylhydrolase is a Therapeutic Target for SARS-CoV-2. bioRxiv : the preprint server for biology (2024)
Timothy W Clark, Jillian Mohan, Michael R Shortreed, Kirsten Obernier, Mohammad Sadnan Al Manir, Christopher P Churas, Amir Dailamy, Yesh Doctor, Antoine Forget, Jan Niklas Hansen, Mengzhou Hu, Joanna Lenkiewicz, Maxwell Adam Levinson, Charlotte Marquez, Sami Nourreddine, Justin Niestroy, Dexter Pratt, Gege Qian, Swathi Thaker, Jean-Christophe Bélisle-Pipon, Cynthia A Brandt, Jake Chen, Ying Ding, Samah Jamal Fodeh, Nevan J Krogan, Emma Lundberg, Prashant Mali, Pamela Payne-Foster, Sarah Jane Ratcliffe, Vardit Ravitsky, Andrej Sali, Wade L Schulz, Trey Ideker
Cell Maps for Artificial Intelligence: AI-Ready Maps of Human Cell Architecture from Disease-Relevant Cell Lines. bioRxiv : the preprint server for biology (2024)
Ujjwal Rathore, Paige Haas, Vigneshwari Easwar Kumar, Joseph Hiatt, Kelsey M Haas, Mehdi Bouhaddou, Danielle L Swaney, Erica Stevenson, Lorena Zuliani-Alvarez, Michael J McGregor, Autumn Turner-Groth, Charles Ochieng' Olwal, Yaw Bediako, Hannes Braberg, Margaret Soucheray, Melanie M Ott, Manon Eckhardt, Judd F Hultquist, Alexander Marson, Robyn M Kaake, Nevan J Krogan
CRISPR-Cas9 screen of E3 ubiquitin ligases identifies TRAF2 and UHRF1 as regulators of HIV latency in primary human T cells. mBio 15 (4) (2024)
Lois M Kelly, Justine C Rutter, Kevin H Lin, Frank Ling, Matthieu Duchmann, Emmanuelle Latour, Nadia Arang, Hélène Pasquer, Duong Ho Nhat, Juliette Charles, Shane T Killarney, Hazel Xiaohui Ang, Federica Namor, Cécile Culeux, Berangere Lombard, Damarys Loew, Danielle L Swaney, Nevan J Krogan, Luc Brunel, Élodie Carretero, Pascal Verdié, Muriel Amblard, Sofiane Fodil, Tony Huynh, Marie Sébert, Lionel Ades, Emmanuel Raffoux, Nina Fenouille, Raphaël A Itzykson, Camille Lobry, Lina Benajiba, Antoine Forget, Anthony R Martin, Kris C Wood, Alexandre Puissant
Targeting a lineage-specific PI3Kɣ-Akt signaling module in acute myeloid leukemia using a heterobifunctional degrader molecule. Nature cancer (2024)
Gwendolyn M Jang, Arun Kumar Annan Sudarsan, Arzhang Shayeganmehr, Erika Prando Munhoz, Reanna Lao, Amit Gaba, Milaid Granadillo Rodríguez, Robin P Love, Benjamin J Polacco, Yuan Zhou, Nevan J Krogan, Robyn M Kaake, Linda Chelico
Protein interaction map of APOBEC3 enzyme family reveals deamination-independent role in cellular function. bioRxiv : the preprint server for biology (2024)
Gwendolyn M Jang, Arun Kumar Annan Sudarsan, Arzhang Shayeganmehr, Erika Prando Munhoz, Reanna Lao, Amit Gaba, Milaid Granadillo Rodríguez, Robin P Love, Benjamin J Polacco, Yuan Zhou, Nevan J Krogan, Robyn M Kaake, Linda Chelico
Protein interaction map of APOBEC3 enzyme family reveals deamination-independent role in cellular function. bioRxiv : the preprint server for biology (2024)
Benjamin J Polacco, Braden T Lobingier, Emily E Blythe, Nohely Abreu, Prachi Khare, Matthew K Howard, Alberto J Gonzalez-Hernandez, Jiewei Xu, Qiongyu Li, Brandon Novy, Zun Zar Chi Naing, Brian K Shoichet, Willow Coyote-Maestas, Joshua Levitz, Nevan J Krogan, Mark Von Zastrow, Ruth Hüttenhain
Profiling the proximal proteome of the activated μ-opioid receptor. Nature chemical biology 20 (9) (2024)
Brianna Steiert, Shelby E Andersen, Paige N McCaslin, Cherilyn A Elwell, Robert Faris, Xavier Tijerina, Parker Smith, Quinn Eldridge, Brian S Imai, Justine V Arrington, Peter M Yau, Kathleen M Mirrashidi, Jeffrey R Johnson, Erik Verschueren, John Von Dollen, Gwendolyn M Jang, Nevan J Krogan, Joanne N Engel, Mary M Weber
Global mapping of the Chlamydia trachomatis conventional secreted effector - host interactome reveals CebN interacts with nucleoporins and Rae1 to impede STAT1 nuclear translocation. bioRxiv : the preprint server for biology (2024)
Clara M Herrera, Eleanor McMahon, Danielle L Swaney, Jessica Sherry, Khavong Pha, Kathleen Adams-Boone, Jeffrey R Johnson, Nevan J Krogan, Meredith Stevers, David Solomon, Cherilyn A Elwell, Joanne N Engel
The Chlamydia trachomatis Inc Tri1 interacts with TRAF7 to displace native TRAF7 interacting partners. Microbiology spectrum (2024)
Xiaofang Zhong, Qiongyu Li, Benjamin J Polacco, Trupti Patil, Aaron Marley, Helene Foussard, Prachi Khare, Rasika Vartak, Jiewei Xu, Jeffrey F DiBerto, Bryan L Roth, Manon Eckhardt, Mark Von Zastrow, Nevan J Krogan, Ruth Hüttenhain
A proximity proteomics pipeline with improved reproducibility and throughput. Molecular systems biology (2024)
Benjamin J Polacco, Braden T Lobingier, Emily E Blythe, Nohely Abreu, Prachi Khare, Matthew K Howard, Alberto J Gonzalez-Hernandez, Jiewei Xu, Qiongyu Li, Brandon Novy, Zun Zar Chi Naing, Brian K Shoichet, Willow Coyote-Maestas, Joshua Levitz, Nevan J Krogan, Mark Von Zastrow, Ruth Hüttenhain
Profiling the proximal proteome of the activated μ-opioid receptor. Nature chemical biology (2024)
Ujjwal Rathore, Paige Haas, Vigneshwari Easwar Kumar, Joseph Hiatt, Kelsey M Haas, Mehdi Bouhaddou, Danielle L Swaney, Erica Stevenson, Lorena Zuliani-Alvarez, Michael J McGregor, Autumn Turner-Groth, Charles Ochieng' Olwal, Yaw Bediako, Hannes Braberg, Margaret Soucheray, Melanie M Ott, Manon Eckhardt, Judd F Hultquist, Alexander Marson, Robyn M Kaake, Nevan J Krogan
CRISPR-Cas9 screen of E3 ubiquitin ligases identifies TRAF2 and UHRF1 as regulators of HIV latency in primary human T cells. mBio 15 (4) (2024)
Benjamin J Polacco, Braden T Lobingier, Emily E Blythe, Nohely Abreu, Prachi Khare, Matthew K Howard, Alberto J Gonzalez-Hernandez, Jiewei Xu, Qiongyu Li, Brandon Novy, Zun Zar Chi Naing, Brian K Shoichet, Willow Coyote-Maestas, Joshua Levitz, Nevan J Krogan, Mark Von Zastrow, Ruth Hüttenhain
Profiling the proximal proteome of the activated μ-opioid receptor. Nature chemical biology 20 (9) (2024)
Timothy W Clark, Jillian Mohan, Michael R Shortreed, Kirsten Obernier, Mohammad Sadnan Al Manir, Christopher P Churas, Amir Dailamy, Yesh Doctor, Antoine Forget, Jan Niklas Hansen, Mengzhou Hu, Joanna Lenkiewicz, Maxwell Adam Levinson, Charlotte Marquez, Sami Nourreddine, Justin Niestroy, Dexter Pratt, Gege Qian, Swathi Thaker, Jean-Christophe Bélisle-Pipon, Cynthia A Brandt, Jake Chen, Ying Ding, Samah Jamal Fodeh, Nevan J Krogan, Emma Lundberg, Prashant Mali, Pamela Payne-Foster, Sarah Jane Ratcliffe, Vardit Ravitsky, Andrej Sali, Wade L Schulz, Trey Ideker
Cell Maps for Artificial Intelligence: AI-Ready Maps of Human Cell Architecture from Disease-Relevant Cell Lines. bioRxiv : the preprint server for biology (2024)
Ujjwal Rathore, Paige Haas, Vigneshwari Easwar Kumar, Joseph Hiatt, Kelsey M Haas, Mehdi Bouhaddou, Danielle L Swaney, Erica Stevenson, Lorena Zuliani-Alvarez, Michael J McGregor, Autumn Turner-Groth, Charles Ochieng' Olwal, Yaw Bediako, Hannes Braberg, Margaret Soucheray, Melanie M Ott, Manon Eckhardt, Judd F Hultquist, Alexander Marson, Robyn M Kaake, Nevan J Krogan
CRISPR-Cas9 screen of E3 ubiquitin ligases identifies TRAF2 and UHRF1 as regulators of HIV latency in primary human T cells. mBio 15 (4) (2024)
Clara M Herrera, Eleanor McMahon, Danielle L Swaney, Jessica Sherry, Khavong Pha, Kathleen Adams-Boone, Jeffrey R Johnson, Nevan J Krogan, Meredith Stevers, David Solomon, Cherilyn A Elwell, Joanne N Engel
The Chlamydia trachomatis Inc Tri1 interacts with TRAF7 to displace native TRAF7 interacting partners. Microbiology spectrum (2024)
Ujjwal Rathore, Paige Haas, Vigneshwari Easwar Kumar, Joseph Hiatt, Kelsey M Haas, Mehdi Bouhaddou, Danielle L Swaney, Erica Stevenson, Lorena Zuliani-Alvarez, Michael J McGregor, Autumn Turner-Groth, Charles Ochieng' Olwal, Yaw Bediako, Hannes Braberg, Margaret Soucheray, Melanie M Ott, Manon Eckhardt, Judd F Hultquist, Alexander Marson, Robyn M Kaake, Nevan J Krogan
CRISPR-Cas9 screen of E3 ubiquitin ligases identifies TRAF2 and UHRF1 as regulators of HIV latency in primary human T cells. mBio 15 (4) (2024)
Rishi Kumar Nageshan, Raquel Ortega, Nevan J Krogan, Julia Promisel Cooper
Fate of telomere entanglements is dictated by the timing of anaphase midregion nuclear envelope breakdown. Nature communications 15 (1) (2024)
Ujjwal Rathore, Paige Haas, Vigneshwari Easwar Kumar, Joseph Hiatt, Kelsey M Haas, Mehdi Bouhaddou, Danielle L Swaney, Erica Stevenson, Lorena Zuliani-Alvarez, Michael J McGregor, Autumn Turner-Groth, Charles Ochieng' Olwal, Yaw Bediako, Hannes Braberg, Margaret Soucheray, Melanie M Ott, Manon Eckhardt, Judd F Hultquist, Alexander Marson, Robyn M Kaake, Nevan J Krogan
CRISPR-Cas9 screen of E3 ubiquitin ligases identifies TRAF2 and UHRF1 as regulators of HIV latency in primary human T cells. mBio 15 (4) (2024)
Xiaofang Zhong, Qiongyu Li, Benjamin J Polacco, Trupti Patil, Aaron Marley, Helene Foussard, Prachi Khare, Rasika Vartak, Jiewei Xu, Jeffrey F DiBerto, Bryan L Roth, Manon Eckhardt, Mark Von Zastrow, Nevan J Krogan, Ruth Hüttenhain
A proximity proteomics pipeline with improved reproducibility and throughput. Molecular systems biology 20 (8) (2024)
Ujjwal Rathore, Paige Haas, Vigneshwari Easwar Kumar, Joseph Hiatt, Kelsey M Haas, Mehdi Bouhaddou, Danielle L Swaney, Erica Stevenson, Lorena Zuliani-Alvarez, Michael J McGregor, Autumn Turner-Groth, Charles Ochieng' Olwal, Yaw Bediako, Hannes Braberg, Margaret Soucheray, Melanie M Ott, Manon Eckhardt, Judd F Hultquist, Alexander Marson, Robyn M Kaake, Nevan J Krogan
CRISPR-Cas9 screen of E3 ubiquitin ligases identifies TRAF2 and UHRF1 as regulators of HIV latency in primary human T cells. mBio 15 (4) (2024)
Siyuan John Liu, Tim J Casey-Clyde, Nam Woo Cho, Jason Swinderman, Melike Pekmezci, Mark C Dougherty, Kyla Foster, William C Chen, Javier E Villanueva-Meyer, Danielle L Swaney, Harish N Vasudevan, Abrar Choudhury, Joanna Pak, Jonathan D Breshears, Ursula E Lang, Charlotte D Eaton, Kamir J Hiam-Galvez, Erica Stevenson, Kuei-Ho Chen, Brian V Lien, David Wu, Steve E Braunstein, Penny K Sneed, Stephen T Magill, Daniel Lim, Michael W McDermott, Mitchel S Berger, Arie Perry, Nevan J Krogan, Marlan R Hansen, Matthew H Spitzer, Luke A Gilbert, Philip V Theodosopoulos, David R Raleigh
Epigenetic reprogramming shapes the cellular landscape of schwannoma. Nature communications 15 (1) (2024)
Rishi Kumar Nageshan, Raquel Ortega, Nevan J Krogan, Julia Promisel Cooper
Fate of telomere entanglements is dictated by the timing of anaphase midregion nuclear envelope breakdown. Nature communications 15 (1) (2024)
Ujjwal Rathore, Paige Haas, Vigneshwari Easwar Kumar, Joseph Hiatt, Kelsey M Haas, Mehdi Bouhaddou, Danielle L Swaney, Erica Stevenson, Lorena Zuliani-Alvarez, Michael J McGregor, Autumn Turner-Groth, Charles Ochieng' Olwal, Yaw Bediako, Hannes Braberg, Margaret Soucheray, Melanie M Ott, Manon Eckhardt, Judd F Hultquist, Alexander Marson, Robyn M Kaake, Nevan J Krogan
CRISPR-Cas9 screen of E3 ubiquitin ligases identifies TRAF2 and UHRF1 as regulators of HIV latency in primary human T cells. mBio 15 (4) (2024)
Gwendolyn M Jang, Arun Kumar Annan Sudarsan, Arzhang Shayeganmehr, Erika Prando Munhoz, Reanna Lao, Amit Gaba, Milaid Granadillo Rodríguez, Robin P Love, Benjamin J Polacco, Yuan Zhou, Nevan J Krogan, Robyn M Kaake, Linda Chelico
Protein interaction map of APOBEC3 enzyme family reveals deamination-independent role in cellular function. bioRxiv : the preprint server for biology (2024)
Brianna Steiert, Shelby E Andersen, Paige N McCaslin, Cherilyn A Elwell, Robert Faris, Xavier Tijerina, Parker Smith, Quinn Eldridge, Brian S Imai, Justine V Arrington, Peter M Yau, Kathleen M Mirrashidi, Jeffrey R Johnson, Erik Verschueren, John Von Dollen, Gwendolyn M Jang, Nevan J Krogan, Joanne N Engel, Mary M Weber
Global mapping of the Chlamydia trachomatis conventional secreted effector - host interactome reveals CebN interacts with nucleoporins and Rae1 to impede STAT1 nuclear translocation. bioRxiv : the preprint server for biology (2024)
Siyuan John Liu, Tim J Casey-Clyde, Nam Woo Cho, Jason Swinderman, Melike Pekmezci, Mark C Dougherty, Kyla Foster, William C Chen, Javier E Villanueva-Meyer, Danielle L Swaney, Harish N Vasudevan, Abrar Choudhury, Joanna Pak, Jonathan D Breshears, Ursula E Lang, Charlotte D Eaton, Kamir J Hiam-Galvez, Erica Stevenson, Kuei-Ho Chen, Brian V Lien, David Wu, Steve E Braunstein, Penny K Sneed, Stephen T Magill, Daniel Lim, Michael W McDermott, Mitchel S Berger, Arie Perry, Nevan J Krogan, Marlan R Hansen, Matthew H Spitzer, Luke A Gilbert, Philip V Theodosopoulos, David R Raleigh
Epigenetic reprogramming shapes the cellular landscape of schwannoma. Nature communications 15 (1) (2024)
Charlotte D Eaton, Lauro Avalos, Siyuan John Liu, Zhenhong Chen, Naomi Zakimi, Tim J Casey-Clyde, Paola Bisignano, Calixto-Hope G Lucas, Erica Stevenson, Abrar Choudhury, Harish N Vasudevan, Stephen T Magill, Jacob S Young, Nevan J Krogan, Javier E Villanueva-Meyer, Danielle L Swaney, David R Raleigh
Merlin S13 phosphorylation regulates meningioma Wnt signaling and magnetic resonance imaging features. Nature communications 15 (1) (2024)
Siyuan John Liu, Tim J Casey-Clyde, Nam Woo Cho, Jason Swinderman, Melike Pekmezci, Mark C Dougherty, Kyla Foster, William C Chen, Javier E Villanueva-Meyer, Danielle L Swaney, Harish N Vasudevan, Abrar Choudhury, Joanna Pak, Jonathan D Breshears, Ursula E Lang, Charlotte D Eaton, Kamir J Hiam-Galvez, Erica Stevenson, Kuei-Ho Chen, Brian V Lien, David Wu, Steve E Braunstein, Penny K Sneed, Stephen T Magill, Daniel Lim, Michael W McDermott, Mitchel S Berger, Arie Perry, Nevan J Krogan, Marlan R Hansen, Matthew H Spitzer, Luke A Gilbert, Philip V Theodosopoulos, David R Raleigh
Epigenetic reprogramming shapes the cellular landscape of schwannoma. Nature communications 15 (1) (2024)
Siyuan John Liu, Tim J Casey-Clyde, Nam Woo Cho, Jason Swinderman, Melike Pekmezci, Mark C Dougherty, Kyla Foster, William C Chen, Javier E Villanueva-Meyer, Danielle L Swaney, Harish N Vasudevan, Abrar Choudhury, Joanna Pak, Jonathan D Breshears, Ursula E Lang, Charlotte D Eaton, Kamir J Hiam-Galvez, Erica Stevenson, Kuei-Ho Chen, Brian V Lien, David Wu, Steve E Braunstein, Penny K Sneed, Stephen T Magill, Daniel Lim, Michael W McDermott, Mitchel S Berger, Arie Perry, Nevan J Krogan, Marlan R Hansen, Matthew H Spitzer, Luke A Gilbert, Philip V Theodosopoulos, David R Raleigh
Epigenetic reprogramming shapes the cellular landscape of schwannoma. Nature communications 15 (1) (2024)
Clara M Herrera, Eleanor McMahon, Danielle L Swaney, Jessica Sherry, Khavong Pha, Kathleen Adams-Boone, Jeffrey R Johnson, Nevan J Krogan, Meredith Stevers, David Solomon, Cherilyn A Elwell, Joanne N Engel
The Chlamydia trachomatis Inc Tri1 interacts with TRAF7 to displace native TRAF7 interacting partners. Microbiology spectrum 12 (7) (2024)
Benjamin J Polacco, Braden T Lobingier, Emily E Blythe, Nohely Abreu, Prachi Khare, Matthew K Howard, Alberto J Gonzalez-Hernandez, Jiewei Xu, Qiongyu Li, Brandon Novy, Zun Zar Chi Naing, Brian K Shoichet, Willow Coyote-Maestas, Joshua Levitz, Nevan J Krogan, Mark Von Zastrow, Ruth Hüttenhain
Profiling the proximal proteome of the activated μ-opioid receptor. Nature chemical biology (2024)
Brianna Steiert, Shelby E Andersen, Paige N McCaslin, Cherilyn A Elwell, Robert Faris, Xavier Tijerina, Parker Smith, Quinn Eldridge, Brian S Imai, Justine V Arrington, Peter M Yau, Kathleen M Mirrashidi, Jeffrey R Johnson, Erik Verschueren, John Von Dollen, Gwendolyn M Jang, Nevan J Krogan, Joanne N Engel, Mary M Weber
Global mapping of the Chlamydia trachomatis conventional secreted effector - host interactome reveals CebN interacts with nucleoporins and Rae1 to impede STAT1 nuclear translocation. bioRxiv : the preprint server for biology (2024)
Siyuan John Liu, Tim J Casey-Clyde, Nam Woo Cho, Jason Swinderman, Melike Pekmezci, Mark C Dougherty, Kyla Foster, William C Chen, Javier E Villanueva-Meyer, Danielle L Swaney, Harish N Vasudevan, Abrar Choudhury, Joanna Pak, Jonathan D Breshears, Ursula E Lang, Charlotte D Eaton, Kamir J Hiam-Galvez, Erica Stevenson, Kuei-Ho Chen, Brian V Lien, David Wu, Steve E Braunstein, Penny K Sneed, Stephen T Magill, Daniel Lim, Michael W McDermott, Mitchel S Berger, Arie Perry, Nevan J Krogan, Marlan R Hansen, Matthew H Spitzer, Luke A Gilbert, Philip V Theodosopoulos, David R Raleigh
Epigenetic reprogramming shapes the cellular landscape of schwannoma. Nature communications 15 (1) (2024)
Clara M Herrera, Eleanor McMahon, Danielle L Swaney, Jessica Sherry, Khavong Pha, Kathleen Adams-Boone, Jeffrey R Johnson, Nevan J Krogan, Meredith Stevers, David Solomon, Cherilyn A Elwell, Joanne N Engel
The Chlamydia trachomatis Inc Tri1 interacts with TRAF7 to displace native TRAF7 interacting partners. Microbiology spectrum 12 (7) (2024)
Xiaofang Zhong, Qiongyu Li, Benjamin J Polacco, Trupti Patil, Aaron Marley, Helene Foussard, Prachi Khare, Rasika Vartak, Jiewei Xu, Jeffrey F DiBerto, Bryan L Roth, Manon Eckhardt, Mark Von Zastrow, Nevan J Krogan, Ruth Hüttenhain
A proximity proteomics pipeline with improved reproducibility and throughput. Molecular systems biology 20 (8) (2024)
Tinus Schynkel, Willem van Snippenberg, Kimberly Verniers, Gwendolyn M Jang, Nevan J Krogan, Pieter Mestdagh, Linos Vandekerckhove, Wim Trypsteen
Interactome of the HIV-1 proteome and human host RNA. EMBO reports (2024)
Gwendolyn M Jang, Arun Kumar Annan Sudarsan, Arzhang Shayeganmehr, Erika Prando Munhoz, Reanna Lao, Amit Gaba, Milaid Granadillo Rodríguez, Robin P Love, Benjamin J Polacco, Yuan Zhou, Nevan J Krogan, Robyn M Kaake, Linda Chelico
Protein interaction map of APOBEC3 enzyme family reveals deamination-independent role in cellular function. bioRxiv : the preprint server for biology (2024)
Xiaofang Zhong, Qiongyu Li, Benjamin J Polacco, Trupti Patil, Aaron Marley, Helene Foussard, Prachi Khare, Rasika Vartak, Jiewei Xu, Jeffrey F DiBerto, Bryan L Roth, Manon Eckhardt, Mark Von Zastrow, Nevan J Krogan, Ruth Hüttenhain
A proximity proteomics pipeline with improved reproducibility and throughput. Molecular systems biology 20 (8) (2024)
Sun Kyung Kim, Miles Sasha Dickinson, Janet Finer-Moore, Ziqiang Guan, Robyn M Kaake, Ignacia Echeverria, Jen Chen, Ernst H Pulido, Andrej Sali, Nevan J Krogan, Oren S Rosenberg, Robert M Stroud
Structure and dynamics of the essential endogenous mycobacterial polyketide synthase Pks13. Nature structural & molecular biology (2023)
Sun Kyung Kim, Miles Sasha Dickinson, Janet Finer-Moore, Ziqiang Guan, Robyn M Kaake, Ignacia Echeverria, Jen Chen, Ernst H Pulido, Andrej Sali, Nevan J Krogan, Oren S Rosenberg, Robert M Stroud
Structure and dynamics of the essential endogenous mycobacterial polyketide synthase Pks13. Nature structural & molecular biology 30 (3) (2023)
Xiaofang Zhong, Qiongyu Li, Benjamin J Polacco, Trupti Patil, Jeffrey F DiBerto, Rasika Vartak, Jiewei Xu, Aaron Marley, Helene Foussard, Bryan L Roth, Manon Eckhardt, Mark Von Zastrow, Nevan J Krogan, Ruth Hüttenhain
An automated proximity proteomics pipeline for subcellular proteome and protein interaction mapping. bioRxiv : the preprint server for biology (2023)
Sun Kyung Kim, Miles Sasha Dickinson, Janet S Finer-Moore, Ziqiang Guan, Robyn M Kaake, Ignacia Echeverria, Jen Chen, Ernst H Pulido, Andrej Sali, Nevan J Krogan, Oren S Rosenberg, Robert M Stroud
Structure and dynamics of the essential endogenous mycobacterial polyketide synthase Pks13. bioRxiv : the preprint server for biology (2023)
Sun Kyung Kim, Miles Sasha Dickinson, Janet Finer-Moore, Ziqiang Guan, Robyn M Kaake, Ignacia Echeverria, Jen Chen, Ernst H Pulido, Andrej Sali, Nevan J Krogan, Oren S Rosenberg, Robert M Stroud
Structure and dynamics of the essential endogenous mycobacterial polyketide synthase Pks13. Nature structural & molecular biology (2023)
Einar K Krogsaeter, Justin McKetney, Angelica Marquez, Zeynep Cakir, Erica Stevenson, Gwendolyn M Jang, Antara Rao, Anton Zhou, Yadong Huang, Nevan J Krogan, Danielle L Swaney
Lysosomal proteomics reveals mechanisms of neuronal apoE4-associated lysosomal dysfunction. bioRxiv : the preprint server for biology (2023)
Sun Kyung Kim, Miles Sasha Dickinson, Janet S Finer-Moore, Ziqiang Guan, Robyn M Kaake, Ignacia Echeverria, Jen Chen, Ernst H Pulido, Andrej Sali, Nevan J Krogan, Oren S Rosenberg, Robert M Stroud
Structure and dynamics of the essential endogenous mycobacterial polyketide synthase Pks13. bioRxiv : the preprint server for biology (2023)
Sun Kyung Kim, Miles Sasha Dickinson, Janet Finer-Moore, Ziqiang Guan, Robyn M Kaake, Ignacia Echeverria, Jen Chen, Ernst H Pulido, Andrej Sali, Nevan J Krogan, Oren S Rosenberg, Robert M Stroud
Structure and dynamics of the essential endogenous mycobacterial polyketide synthase Pks13. Nature structural & molecular biology 30 (3) (2023)
Adriana M Steinbach, Varun L Bhadkamkar, David Jimenez-Morales, Erica Stevenson, Gwendolyn M Jang, Nevan J Krogan, Danielle L Swaney, Shaeri Mukherjee
Cross-family small GTPase ubiquitination by the intracellular pathogen Legionella pneumophila . bioRxiv : the preprint server for biology (2023)
Andrea Fossati, Deepto Mozumdar, Claire Kokontis, Melissa Mèndez-Moran, Eliza S Nieweglowska, Adrian Pelin, Yuping Li, Baron Guo, Nevan J Krogan, David A Agard, Joseph Bondy-Denomy, Danielle L Swaney
Next-generation proteomics for quantitative Jumbophage-bacteria interaction mapping. Nature communications 14 (1) (2023)
Andrew S Mendiola, Zhaoqi Yan, Karuna Dixit, Jeffrey R Johnson, Mehdi Bouhaddou, Anke Meyer-Franke, Min-Gyoung Shin, Yu Yong, Ayushi Agrawal, Eilidh MacDonald, Gayathri Muthukumar, Clairice Pearce, Nikhita Arun, Belinda Cabriga, Rosa Meza-Acevedo, Maria Del Pilar S Alzamora, Scott S Zamvil, Alexander R Pico, Jae Kyu Ryu, Nevan J Krogan, Katerina Akassoglou
Defining blood-induced microglia functions in neurodegeneration through multiomic profiling. Nature immunology (2023)
Xiaofang Zhong, Qiongyu Li, Benjamin J Polacco, Trupti Patil, Jeffrey F DiBerto, Rasika Vartak, Jiewei Xu, Aaron Marley, Helene Foussard, Bryan L Roth, Manon Eckhardt, Mark Von Zastrow, Nevan J Krogan, Ruth Hüttenhain
An automated proximity proteomics pipeline for subcellular proteome and protein interaction mapping. bioRxiv : the preprint server for biology (2023)
Advait Subramanian, Lan Wang, Tom Moss, Mark Voorhies, Smriti Sangwan, Erica Stevenson, Ernst H Pulido, Samentha Kwok, Robert J Chalkley, Kathy H Li, Nevan J Krogan, Danielle L Swaney, Alma L Burlingame, Stephen N Floor, Anita Sil, Peter Walter, Shaeri Mukherjee
A Legionella toxin exhibits tRNA mimicry and glycosyl transferase activity to target the translation machinery and trigger a ribotoxic stress response. Nature cell biology (2023)
Andrea Fossati, Deepto Mozumdar, Claire Kokontis, Melissa Mèndez-Moran, Eliza S Nieweglowska, Adrian Pelin, Yuping Li, Baron Guo, Nevan J Krogan, David A Agard, Joseph Bondy-Denomy, Danielle L Swaney
Next-generation interaction proteomics for quantitative Jumbophage-bacteria interaction mapping. bioRxiv : the preprint server for biology (2023)
Kelsey M Haas, Michael J McGregor, Mehdi Bouhaddou, Benjamin J Polacco, Eun-Young Kim, Thong T Nguyen, Billy W Newton, Matthew Urbanowski, Heejin Kim, Michael A P Williams, Veronica V Rezelj, Alexandra Hardy, Andrea Fossati, Erica J Stevenson, Ellie Sukerman, Tiffany Kim, Sudhir Penugonda, Elena Moreno, Hannes Braberg, Yuan Zhou, Giorgi Metreveli, Bhavya Harjai, Tia A Tummino, James E Melnyk, Margaret Soucheray, Jyoti Batra, Lars Pache, Laura Martin-Sancho, Jared Carlson-Stevermer, Alexander S Jureka, Christopher F Basler, Kevan M Shokat, Brian K Shoichet, Leah P Shriver, Jeffrey R Johnson, Megan L Shaw, Sumit K Chanda, Dan M Roden, Tonia C Carter, Leah C Kottyan, Rex L Chisholm, Jennifer Allen Pacheco, Maureen E Smith, Steven J Schrodi, Randy A Albrecht, Marco Vignuzzi, Lorena Zuliani-Alvarez, Danielle L Swaney, Manon Eckhardt, Steven M Wolinsky, Kris M White, Judd F Hultquist, Robyn M Kaake, Adolfo García-Sastre, Nevan J Krogan
Proteomic and genetic analyses of influenza A viruses identify pan-viral host targets. Nature communications 14 (1) (2023)
Sun Kyung Kim, Miles Sasha Dickinson, Janet Finer-Moore, Ziqiang Guan, Robyn M Kaake, Ignacia Echeverria, Jen Chen, Ernst H Pulido, Andrej Sali, Nevan J Krogan, Oren S Rosenberg, Robert M Stroud
Structure and dynamics of the essential endogenous mycobacterial polyketide synthase Pks13. Nature structural & molecular biology 30 (3) (2023)
Andrea Fossati, Deepto Mozumdar, Claire Kokontis, Eliza S Nieweglowska, Melissa Mendez, Adrian Pelin, Yuping Li, Baron Guo, Nevan J Krogan, David A Agard, Joseph Bondy-Denomy, Danielle L Swaney
Next-generation interaction proteomics for quantitative Jumbophage-bacteria interaction mapping. bioRxiv : the preprint server for biology (2023)
Xiaofang Zhong, Qiongyu Li, Benjamin J Polacco, Trupti Patil, Jeffrey F DiBerto, Rasika Vartak, Jiewei Xu, Aaron Marley, Helene Foussard, Bryan L Roth, Manon Eckhardt, Mark Von Zastrow, Nevan J Krogan, Ruth Hüttenhain
An automated proximity proteomics pipeline for subcellular proteome and protein interaction mapping. bioRxiv : the preprint server for biology (2023)
Hayarpi Torosyan, Michael D Paul, Antoine Forget, Megan Lo, Devan Diwanji, Krzysztof Pawłowski, Nevan J Krogan, Natalia Jura, Kliment A Verba
Structural insights into regulation of the PEAK3 pseudokinase scaffold by 14-3-3. Nature communications 14 (1) (2023)
Juan A Perez-Bermejo, Luke M Judge, Christina L Jensen, Kenneth Wu, Hannah L Watry, Annie Truong, Jaclyn J Ho, Matthew Carter, Wendy V Runyon, Robyn M Kaake, Ernst H Pulido, Mohammad A Mandegar, Danielle L Swaney, Po-Lin So, Nevan J Krogan, Bruce R Conklin
Functional analysis of a common BAG3 allele associated with protection from heart failure. Nature cardiovascular research 2 (7) (2023)
Xiaofang Zhong, Qiongyu Li, Benjamin J Polacco, Trupti Patil, Jeffrey F DiBerto, Rasika Vartak, Jiewei Xu, Aaron Marley, Helene Foussard, Bryan L Roth, Manon Eckhardt, Mark Von Zastrow, Nevan J Krogan, Ruth Hüttenhain
An automated proximity proteomics pipeline for subcellular proteome and protein interaction mapping. bioRxiv : the preprint server for biology (2023)
Sun Kyung Kim, Miles Sasha Dickinson, Janet S Finer-Moore, Ziqiang Guan, Robyn M Kaake, Ignacia Echeverria, Jen Chen, Ernst H Pulido, Andrej Sali, Nevan J Krogan, Oren S Rosenberg, Robert M Stroud
Structure and dynamics of the essential endogenous mycobacterial polyketide synthase Pks13. bioRxiv : the preprint server for biology (2023)
Belinda Wang, Rasika Vartak, Yefim Zaltsman, Zun Zar Chi Naing, Kelsey M Hennick, Benjamin J Polacco, Ali Bashir, Manon Eckhardt, Mehdi Bouhaddou, Jiewei Xu, Nawei Sun, Micaela Lasser, Yuan Zhou, Keelan Z Guiley, Una Chan, Julia A Kaye, Prachi Khare, Sam Drake, Vanessa Drury, David Francis Burke, Silvano Gonzalez, Sahar Alkhairy, Reuben Thomas, Stephanie Lam, Montana Morris, Ethel Bader, Meghan Seyler, Tierney Baum, Rebecca Krasnoff, Sheng Wang, Presley Pham, Juan Arbalaez, Dexter Pratt, Shivali Chag, Thomas Rolland, Thomas Bourgeron, Steven Finkbeiner, Sourav Bandyopadhyay, Trey Ideker, Pedro Beltrao, Nadir Moohmood, Helen Rankin Willsey, Kirsten Obernier, Tomasz Jan Nowakowski, Ruth Hüttenhain, Matthew W State, A Jeremy Willsey, Nevan J Krogan
A foundational atlas of autism protein interactions reveals molecular convergence. bioRxiv : the preprint server for biology (2023)
Joseph Hiatt, Judd F Hultquist, Michael J McGregor, Mehdi Bouhaddou, Ryan T Leenay, Lacy M Simons, Janet M Young, Paige Haas, Theodore L Roth, Victoria R Tobin, Jason A Wojcechowskyj, Jonathan M Woo, Ujjwal Rathore, Devin A Cavero, Eric Shifrut, Thong T Nguyen, Kelsey M Haas, Harmit S Malik, Jennifer A Doudna, Andrew P May, Alexander Marson, Nevan J Krogan
A functional map of HIV-host interactions in primary human T cells. Nature communications 13 (1) (2022)
Patrick C O'Leary, Hua-Dong Chen, Yagmur Umay Doruk, Tess Williamson, Benjamin J Polacco, Andrew S McNeal, Tanushree Shenoy, Nupura Kale, Julia Carnevale, Erica Stevenson, David A Quigley, Jonathan Chou, Felix Y Feng, Danielle L Swaney, Nevan J Krogan, Minkyu Kim, Morgan E Diolati, Alan Ashworth
Resistance to ATR Inhibitors Is Mediated by Loss of the Nonsense-Mediated Decay Factor UPF2. Cancer research 82 (21) (2022)
Ignacia Echeverria, Hannes Braberg, Nevan J Krogan, Andrej Sali
Integrative structure determination of histones H3 and H4 using genetic interactions. The FEBS journal (2022)
Gregory J Krause, Antonio Diaz, Maryam Jafari, Rabia R Khawaja, Esperanza Agullo-Pascual, Olaya Santiago-Fernández, Alicia L Richards, Kuei-Ho Chen, Phillip Dmitriev, Yan Sun, Stephanie K See, Kotb Abdelmohsen, Krystyna Mazan-Mamczarz, Nevan J Krogan, Myriam Gorospe, Danielle L Swaney, Simone Sidoli, Jose Javier Bravo-Cordero, Martin Edward Kampmann, Ana Maria Cuervo
Reduced endosomal microautophagy activity in aging associates with enhanced exocyst-mediated protein secretion. Aging cell 21 (10) (2022)
James D Price, Susan Lindtner, Athéna R Ypsilanti, Fadya Binyameen, Jeffrey R Johnson, Billy W Newton, Nevan J Krogan, John L R Rubenstein
DLX1 and the NuRD complex cooperate in enhancer decommissioning and transcriptional repression. Development (Cambridge, England) 149 (11) (2022)
Christine E Peters, Ursula Schulze-Gahmen, Manon Eckhardt, Gwendolyn M Jang, Jiewei Xu, Ernst H Pulido, Conner Bardine, Charles S Craik, Melanie M Ott, Or Gozani, Kliment A Verba, Ruth Hüttenhain, Jan E Carette, Nevan J Krogan
Structure-function analysis of enterovirus protease 2A in complex with its essential host factor SETD3. Nature communications 13 (1) (2022)
Pamela J Shaw, Valerie Odon, Calum Harvey, Mark O Collins, Andrew Peden, John Franklin, Emily Graves, Jack Ng Marshall, Cleide Dos Santos Souza, Sai Zhang, Lydia Castelli, Guillaume M Hautbergue, Mimoun Azzouz, David Gordon, Nevan J Krogan, Laura Ferraiuolo, Michael P Snyder, Pamela J Shaw, Jan Rehwinkel, Johnathan Cooper-Knock
Low expression of EXOSC2 protects against clinical COVID-19 and impedes SARS-CoV-2 replication. Life science alliance 6 (1) (2022)
Adrienne E D Stormo, Farbod Shavarebi, Molly FitzGibbon, Elizabeth M Earley, Hannah Ahrendt, Lotus S Lum, Erik Verschueren, Danielle L Swaney, Gaia Skibinski, Abinaya Ravisankar, Jeffrey van Haren, Emily J Davis, Jeffrey R Johnson, John Von Dollen, Carson Balen, Jacob Porath, Claudia Crosio, Christian Mirescu, Ciro Iaccarino, William T Dauer, R Jeremy Nichols, Torsten Wittmann, Timothy C Cox, Steven Finkbeiner, Nevan J Krogan, Scott A Oakes, Annie Hiniker
The E3 ligase TRIM1 ubiquitinates LRRK2 and controls its localization, degradation, and toxicity. The Journal of cell biology 221 (4) (2022)
Lili Zhu, Krishna Choudhary, Barbara Gonzalez-Teran, Yen-Sin Ang, Reuben Thomas, Nicole R Stone, Lei Liu, Ping Zhou, Chenchen Zhu, Hongmei Ruan, Yu Huang, Shibo Jin, Angelo Pelonero, Frances Koback, Arun Padmanabhan, Nandhini Sadagopan, Austin Hsu, Mauro W Costa, Casey A Gifford, Joke G van Bemmel, Ruth Hüttenhain, Vasanth Vedantham, Bruce R Conklin, Brian L Black, Benoit G Bruneau, Lars Steinmetz, Nevan J Krogan, Katherine S Pollard, Deepak Srivastava
Transcription Factor GATA4 Regulates Cell Type-Specific Splicing Through Direct Interaction With RNA in Human Induced Pluripotent Stem Cell-Derived Cardiac Progenitors. Circulation 146 (10) (2022)
Abrar Choudhury, Stephen T Magill, Charlotte D Eaton, Briana C Prager, William C Chen, Martha A Cady, Kyounghee Seo, Calixto-Hope G Lucas, Tim J Casey-Clyde, Harish N Vasudevan, Siyuan John Liu, Javier E Villanueva-Meyer, Tai-Chung Lam, Jenny Kan-Suen Pu, Lai-Fung Li, Gilberto Ka-Kit Leung, Danielle L Swaney, Michael Y Zhang, Jason W Chan, Zhixin Qiu, Michael V Martin, Matthew S Susko, Steve E Braunstein, Nancy Ann Oberheim Bush, Jessica D Schulte, Nicholas Butowski, Penny K Sneed, Mitchel S Berger, Nevan J Krogan, Arie Perry, Joanna J Phillips, David A Solomon, Joseph F Costello, Michael W McDermott, Jeremy N Rich, David R Raleigh
Meningioma DNA methylation groups identify biological drivers and therapeutic vulnerabilities. Nature genetics 54 (5) (2022)
Jose F Varona, Pedro Landete, Jose Antonio Lopez-Martin, Vicente Estrada, Roger Paredes, Pablo Guisado-Vasco, Lucia Fernandez de Orueta, Miguel Torralba, Jesús Fortun, Roberto Vates, Jose Barberan, Bonaventura Clotet, Julio Ancochea, Daniel Carnevali, Noemi Cabello, Lourdes Porras, Paloma Gijon, Alfonso Monereo, Daniel Abad, Sonia Zuñiga, Isabel Sola, Jordi Rodon, Julia Vergara-Alert, Nuria Izquierdo-Useros, Salvador Fudio, Maria Jose Pontes, Beatriz de Rivas, Patricia Giron de Velasco, Antonio Nieto, Javier Gomez, Pablo Aviles, Rubin Lubomirov, Alvaro Belgrano, Belen Sopesen, Kris M White, Romel Rosales, Soner Yildiz, Ann-Kathrin Reuschl, Lucy G Thorne, Clare Jolly, Greg J Towers, Lorena Zuliani-Alvarez, Mehdi Bouhaddou, Kirsten Obernier, Briana Lynn McGovern, M Luis Rodriguez, Luis Enjuanes, Jose M Fernandez-Sousa, Nevan J Krogan, Jose M Jimeno, Adolfo García-Sastre
Preclinical and randomized phase I studies of plitidepsin in adults hospitalized with COVID-19. Life science alliance 5 (4) (2022)
Phoebe Y T Lu, Alyssa C Kirlin, Maria J Aristizabal, Hilary T Brewis, Nancy Lévesque, Dheva T Setiaputra, Nikita Avvakumov, Joris J Benschop, Marian Groot Koerkamp, Frank C P Holstege, Nevan J Krogan, Calvin K Yip, Jacques Côté, Michael S Kobor
A balancing act: interactions within NuA4/TIP60 regulate picNuA4 function in Saccharomyces cerevisiae and humans. Genetics 222 (3) (2022)
Hua-Dong Chen, Morgan E Diolati, Patrick C O'Leary, Ajda Rojc, Nevan J Krogan, Minkyu Kim, Alan Ashworth
A Whole-Genome CRISPR Screen Identifies AHR Loss as a Mechanism of Resistance to a PARP7 Inhibitor. Molecular cancer therapeutics 21 (7) (2022)
Hannes Braberg, Ignacia Echeverria, Robyn M Kaake, Andrej Sali, Nevan J Krogan
From systems to structure - using genetic data to model protein structures. Nature reviews. Genetics 23 (6) (2022)
Dhivya Kumar, Addison Rains, Vicente Herranz-Pérez, Quanlong Lu, Xiaoyu Shi, Danielle L Swaney, Erica Stevenson, Nevan J Krogan, Bo Huang, Christopher Westlake, Jose Manuel García-Verdugo, Bradley K Yoder, Jeremy F Reiter
A ciliopathy complex builds distal appendages to initiate ciliogenesis. The Journal of cell biology 220 (9) (2021)
Alicia L Richards, Manon Eckhardt, Nevan J Krogan
Mass spectrometry-based protein-protein interaction networks for the study of human diseases. Molecular systems biology 17 (1) (2021)
Kliment Verba, Meghna Gupta, Caleigh Azumaya, Michelle Moritz, Sergei Pourmal, Amy Diallo, Gregory Merz, Gwendolyn Jang, Mehdi Bouhaddou, Andrea Fossati, Axel Brilot, Devan Diwanji, Evelyn Hernandez, Nadia Herrera, Huong Kratochvil, Victor Lam, Fei Li, Yang Li, Henry C Nguyen, Carlos Nowotny, Tristan Owens, Jessica Peters, Alexandrea N Rizo, Ursula Schulze-Gahmen, Amber Smith, Iris Young, Zanlin Yu, Daniel Asarnow, Christian Billesbølle, Melody G Campbell, Jen Chen, Kuei-Ho Chen, Un Seng Chio, Miles Sasha Dickinson, Loan Doan, Mingliang Jin, Kate Kim, Junrui Li, Yen-Li Li, Edmond Linossi, Yanxin Liu, Megan Lo, Jocelyne Lopez, Kyle Lopez, Adamo Mancino, Frank Moss Iii, Michael Paul, Komal Pawar, Adrian Pelin, Thomas Pospiech, Cristina Puchades, Soumya Remesh, Maliheh Safari, Kaitlin Schaefer, Ming Sun, Mariano Tabios, Aye Thwin, Erron W Titus, Raphael Trenker, Eric Tse, Tsz Kin Martin Tsui, Feng Feng, Kaihua Zhang, Yang Zhang, Jianhua Zhao, Fengbo Zhou, Yuan Zhou, Lorena Zuliani-Alvarez, David A Agard, Yifan Cheng, James Fraser, Natalia Jura, Tanja Kortemme, Aashish Manglik, Daniel R Southworth, Robert M Stroud, Danielle Swaney, Nevan J Krogan, Adam Frost, Oren S Rosenberg
CryoEM and AI reveal a structure of SARS-CoV-2 Nsp2, a multifunctional protein involved in key host processes. Research square (2021)
Tia A Tummino, Veronica V Rezelj, Benoit Fischer, Audrey Fischer, Matthew J O'Meara, Blandine Monel, Thomas Vallet, Ziyang Zhang, Assaf Alon, Henry R O'Donnell, Jiankun Lyu, Heiko Schadt, Kris M White, Nevan J Krogan, Laszlo Urban, Kevan M Shokat, Andrew C Kruse, Adolfo García-Sastre, Olivier Schwartz, Francesca Moretti, Marco Vignuzzi, Francois Pognan, Brian K Shoichet
Phospholipidosis is a shared mechanism underlying the in vitro antiviral activity of many repurposed drugs against SARS-CoV-2. bioRxiv : the preprint server for biology (2021)
Meghna Gupta, Caleigh M Azumaya, Michelle Moritz, Sergei Pourmal, Amy Diallo, Gregory E Merz, Gwendolyn M Jang, Mehdi Bouhaddou, Andrea Fossati, Axel F Brilot, Devan Diwanji, Evelyn Hernandez, Nadia Herrera, Huong T Kratochvil, Victor L Lam, Fei Li, Yang Li, Henry C Nguyen, Carlos A Nowotny, Tristan W Owens, Jessica K Peters, Alexandrea N Rizo, Ursula Schulze-Gahmen, Amber M Smith, Iris D Young, Zanlin Yu, Daniel E Asarnow, Christian B Billesbølle, Melody G Campbell, Jen Chen, Kuei-Ho Chen, Un Seng Chio, Miles Sasha Dickinson, Loan Doan, Mingliang Jin, Sun Kyung Kim, Junrui Li, Grant J Jensen, Edmond M Linossi, Yanxin Liu, Megan Lo, Jocelyne Lopez, Kyle E Lopez, Adamo S Mancino, Frank R Moss, Michael D Paul, Komal Ishwar Pawar, Adrian Pelin, Thomas H Pospiech, Cristina Puchades, Soumya Govinda Remesh, Maliheh Safari, Kaitlin Schaefer, Ming Sun, Mariano C Tabios, Aye C Thwin, Erron W Titus, Raphael Trenker, Eric Tse, Tsz Kin Martin Tsui, Feng Wang, Kaihua Zhang, Sunny Zhang, Jianhua Zhao, Fengbo Zhou, Yuan Zhou, Lorena Zuliani-Alvarez, null null, David A Agard, Yifan Cheng, Brian K Shoichet, Natalia Jura, Tanja Kortemme, Aashish Manglik, Daniel R Southworth, Robert M Stroud, Danielle L Swaney, Nevan J Krogan, Adam Frost, Oren S Rosenberg, Kliment A Verba
CryoEM and AI reveal a structure of SARS-CoV-2 Nsp2, a multifunctional protein involved in key host processes. bioRxiv : the preprint server for biology (2021)

Nevan J Krogan.css-eqlu8i{font-size:small;padding-left:4px;} (Nevan Krogan)

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Nevan J Krogan (Nevan Krogan)