Dexter Pratt

Publication Activity (10 Years)

Years Active: 2020-2024
Publications (10 Years): 14

Top Topics

Congenital Heart Disease

Top Venues

bioRxiv : the preprint server for biology

Nature protocols

Bioinformatics (Oxford, England)

Nature biotechnology

This page only lists publications with an associated author ORCID identifier.

Publications

Timothy W Clark, Jillian Mohan, Michael R Shortreed, Kirsten Obernier, Mohammad Sadnan Al Manir, Christopher P Churas, Amir Dailamy, Yesh Doctor, Antoine Forget, Jan Niklas Hansen, Mengzhou Hu, Joanna Lenkiewicz, Maxwell Adam Levinson, Charlotte Marquez, Sami Nourreddine, Justin Niestroy, Dexter Pratt, Gege Qian, Swathi Thaker, Jean-Christophe Bélisle-Pipon, Cynthia A Brandt, Jake Chen, Ying Ding, Samah Jamal Fodeh, Nevan J Krogan, Emma Lundberg, Prashant Mali, Pamela Payne-Foster, Sarah Jane Ratcliffe, Vardit Ravitsky, Andrej Sali, Wade L Schulz, Trey Ideker
Cell Maps for Artificial Intelligence: AI-Ready Maps of Human Cell Architecture from Disease-Relevant Cell Lines. bioRxiv : the preprint server for biology (2024)
Timothy W Clark, Jillian Mohan, Michael R Shortreed, Kirsten Obernier, Mohammad Sadnan Al Manir, Christopher P Churas, Amir Dailamy, Yesh Doctor, Antoine Forget, Jan Niklas Hansen, Mengzhou Hu, Joanna Lenkiewicz, Maxwell Adam Levinson, Charlotte Marquez, Sami Nourreddine, Justin Niestroy, Dexter Pratt, Gege Qian, Swathi Thaker, Jean-Christophe Bélisle-Pipon, Cynthia A Brandt, Jake Chen, Ying Ding, Samah Jamal Fodeh, Nevan J Krogan, Emma Lundberg, Prashant Mali, Pamela Payne-Foster, Sarah Jane Ratcliffe, Vardit Ravitsky, Andrej Sali, Wade L Schulz, Trey Ideker
Cell Maps for Artificial Intelligence: AI-Ready Maps of Human Cell Architecture from Disease-Relevant Cell Lines. bioRxiv : the preprint server for biology (2024)
Timothy W Clark, Jillian Mohan, Michael R Shortreed, Kirsten Obernier, Mohammad Sadnan Al Manir, Christopher P Churas, Amir Dailamy, Yesh Doctor, Antoine Forget, Jan Niklas Hansen, Mengzhou Hu, Joanna Lenkiewicz, Maxwell Adam Levinson, Charlotte Marquez, Sami Nourreddine, Justin Niestroy, Dexter Pratt, Gege Qian, Swathi Thaker, Jean-Christophe Bélisle-Pipon, Cynthia A Brandt, Jake Chen, Ying Ding, Samah Jamal Fodeh, Nevan J Krogan, Emma Lundberg, Prashant Mali, Pamela Payne-Foster, Sarah Jane Ratcliffe, Vardit Ravitsky, Andrej Sali, Wade L Schulz, Trey Ideker
Cell Maps for Artificial Intelligence: AI-Ready Maps of Human Cell Architecture from Disease-Relevant Cell Lines. bioRxiv : the preprint server for biology (2024)
Sarah N Wright, Scott Colton, Michael R Shortreed, Rudolf T Pillich, Christopher P Churas, Dexter Pratt, Trey Ideker
State of the Interactomes: an evaluation of molecular networks for generating biological insights. bioRxiv : the preprint server for biology (2024)
Sara Brin Rosenthal, Sarah N Wright, Sophie N Liu, Christopher Churas, Daisy Chilin-Fuentes, Chi-Hua Chen, Kathleen M Fisch, Dexter Pratt, Jason F Kreisberg, Trey Ideker
Mapping the common gene networks that underlie related diseases. Nature protocols (2023)
Sara Brin Rosenthal, Sarah N Wright, Sophie N Liu, Christopher Churas, Daisy Chilin-Fuentes, Chi-Hua Chen, Kathleen M Fisch, Dexter Pratt, Jason F Kreisberg, Trey Ideker
Mapping the common gene networks that underlie related diseases. Nature protocols (2023)
Rudolf T Pillich, Jing Chen, Christopher Churas, Dylan Fong, Benjamin M Gyori, Jisoo Park, Klas Karis, Sophie N Liu, Keiichiro Ono, Alexander Pico, Dexter Pratt
NDEx IQuery: a multi-method network gene set analysis leveraging the Network Data Exchange. Bioinformatics (Oxford, England) 39 (3) (2023)
Sara Brin Rosenthal, Sarah N Wright, Sophie N Liu, Christopher Churas, Daisy Chilin-Fuentes, Chi-Hua Chen, Kathleen M Fisch, Dexter Pratt, Jason F Kreisberg, Trey Ideker
Mapping the common gene networks that underlie related diseases. Nature protocols (2023)
Rudolf T Pillich, Jing Chen, Christopher Churas, Dylan Fong, Benjamin M Gyori, Jisoo Park, Klas Karis, Sophie N Liu, Keiichiro Ono, Alexander Pico, Dexter Pratt
NDEx IQuery: a multi-method network gene set analysis leveraging the Network Data Exchange. Bioinformatics (Oxford, England) 39 (3) (2023)
Dexter Pratt, Mengzhou Hu, Sahar Alkhairy, Ingoo Lee, Rudolf Pillich, Robin E Bachelder, Trey Ideker
Evaluation of large language models for discovery of gene set function. Research square (2023)
Naoki Konno, Yusuke Kijima, Keito Watano, Soh Ishiguro, Keiichiro Ono, Mamoru Tanaka, Hideto Mori, Nanami Masuyama, Dexter Pratt, Trey Ideker, Wataru Iwasaki, Nozomu Yachie
Deep distributed computing to reconstruct extremely large lineage trees. Nature biotechnology 40 (4) (2022)
Vasundra Touré, Steven Vercruysse, Marcio Luis Acencio, Ruth C Lovering, Sandra Orchard, Glyn Bradley, Cristina Casals-Casas, Claudine Chaouiya, Noemi Del-Toro, Åsmund Flobak, Pascale Gaudet, Henning Hermjakob, Charles Tapley Hoyt, Luana Licata, Astrid Lægreid, Christopher J Mungall, Anne Niknejad, Simona Panni, Livia Perfetto, Pablo Porras, Dexter Pratt, Julio Saez-Rodriguez, Denis Thieffry, Paul D Thomas, Dénes Türei, Martin Kuiper
The Minimum Information about a Molecular Interaction CAusal STatement (MI2CAST). Bioinformatics (Oxford, England) 36 (24) (2021)
Fan Zheng, Marcus R Kelly, Dana J Ramms, Marissa L Heintschel, Kai Tao, Beril Tutuncuoglu, John J Lee, Keiichiro Ono, Helene Foussard, Michael Chen, Kari A Herrington, Erica Silva, Sophie N Liu, Jing Chen, Christopher P Churas, Nicholas Wilson, Anton Kratz, Rudolf T Pillich, Devin N Patel, Jisoo Park, Brent M Kuenzi, Michael K Yu, Katherine Licon, Dexter Pratt, Jason F Kreisberg, Minkyu Kim, Danielle L Swaney, Xiaolin Nan, Stephanie I Fraley, Jorge Silvio Gutkind, Nevan J Krogan, Trey Ideker
Interpretation of cancer mutations using a multiscale map of protein systems. Science (New York, N.Y.) 374 (6563) (2021)
Akshat Singhal, Song Cao, Christopher P Churas, Dexter Pratt, Santo Fortunato, Fan Zheng, Trey Ideker
Multiscale community detection in Cytoscape. PLoS computational biology 16 (10) (2020)