Li Cui

Publication Activity (10 Years)

Years Active: 2017-2024
Publications (10 Years): 47

Top Topics

Antibiotic Resistance Genes

Top Venues

Environmental science & technology

Analytical chemistry

Angewandte Chemie (International ed. in English)

This page only lists publications with an associated author ORCID identifier.

Publications

Kunhao Qin, Xing Shi, Kai Yang, Qiuqing Xu, Fuxing Wang, Senxiong Chen, Tingting Xu, Jinquan Liu, Wangrong Wen, Rongchang Chen, Zheng Liu, Li Cui, Kai Zhou
Phage-antibiotic synergy suppresses resistance emergence of Klebsiella pneumoniae by altering the evolutionary fitness. mBio (2024)
Hong-Zhe Li, Jing-Jing Peng, Kai Yang, Yiyue Zhang, Qing-Lin Chen, Yong-Guan Zhu, Li Cui
Single-cell exploration of active phosphate-solubilizing bacteria across diverse soil matrices for sustainable phosphorus management. Nature food 5 (8) (2024)
Hong-Zhe Li, Wen-Jing Li, Zi-Jian Wang, Qing-Lin Chen, Mia Kristine Staal Jensen, Min Qiao, Li Cui
Integrating Multiple Bacterial Phenotypes and Bayesian Network for Analyzing Health Risks of Pathogens in Plastisphere. Analytical chemistry (2024)
Hong-Zhe Li, Jing-Jing Peng, Kai Yang, Yiyue Zhang, Qing-Lin Chen, Yong-Guan Zhu, Li Cui
Single-cell exploration of active phosphate-solubilizing bacteria across diverse soil matrices for sustainable phosphorus management. Nature food (2024)
Lin Xu, Xiao-Lan Yue, Hong-Zhe Li, Shu-Ling Jian, Wen-Sheng Shu, Li Cui, Xue-Wei Xu
Aerobic Anoxygenic Phototrophic Bacteria in the Marine Environments Revealed by Raman/Fluorescence-Guided Single-Cell Sorting and Targeted Metagenomics. Environmental science & technology 58 (16) (2024)
Kang Soo Lee, Zachary Landry, Awais Athar, Uria Alcolombri, Pratchaya Pramoj Na Ayutthaya, David Berry, Philippe de Bettignies, Ji-Xin Cheng, Gabor Csucs, Li Cui, Volker Deckert, Thomas Dieing, Jennifer Dionne, Ondrej Doskocil, Glen D'Souza, Cristina García-Timermans, Notburga Gierlinger, Keisuke Goda, Roland Hatzenpichler, Richard J Henshaw, Wei E Huang, Ievgeniia Iermak, Natalia P Ivleva, Janina Kneipp, Patrick Kubryk, Kirsten Küsel, Tae Kwon Lee, Sung Sik Lee, Bo Ma, Clara Martínez-Pérez, Pavel Matousek, Rainer U Meckenstock, Wei Min, Peter Mojzeš, Oliver Müller, Naresh Kumar, Per Halkjaer Nielsen, Ioan Notingher, Márton Palatinszky, Fátima C Pereira, Giuseppe Pezzotti, Zdenek Pilat, Filip Plesinger, Jürgen Popp, Alexander J Probst, Alessandra Riva, Amr A E Saleh, Ota Samek, Haley M Sapers, Olga T Schubert, Astrid K M Stubbusch, Loza F Tadesse, Gordon T Taylor, Michael Wagner, Jing Wang, Huabing Yin, Yang Yue, Renato Zenobi, Jacopo Zini, Siddhant Tripathi, Roman Stocker
MicrobioRaman: an open-access web repository for microbiological Raman spectroscopy data. Nature microbiology 9 (5) (2024)
Kang Soo Lee, Zachary Landry, Awais Athar, Uria Alcolombri, Pratchaya Pramoj Na Ayutthaya, David Berry, Philippe de Bettignies, Ji-Xin Cheng, Gabor Csucs, Li Cui, Volker Deckert, Thomas Dieing, Jennifer Dionne, Ondrej Doskocil, Glen D'Souza, Cristina García-Timermans, Notburga Gierlinger, Keisuke Goda, Roland Hatzenpichler, Richard J Henshaw, Wei E Huang, Ievgeniia Iermak, Natalia P Ivleva, Janina Kneipp, Patrick Kubryk, Kirsten Küsel, Tae Kwon Lee, Sung Sik Lee, Bo Ma, Clara Martínez-Pérez, Pavel Matousek, Rainer U Meckenstock, Wei Min, Peter Mojzeš, Oliver Müller, Naresh Kumar, Per Halkjaer Nielsen, Ioan Notingher, Márton Palatinszky, Fátima C Pereira, Giuseppe Pezzotti, Zdenek Pilat, Filip Plesinger, Jürgen Popp, Alexander J Probst, Alessandra Riva, Amr A E Saleh, Ota Samek, Haley M Sapers, Olga T Schubert, Astrid K M Stubbusch, Loza F Tadesse, Gordon T Taylor, Michael Wagner, Jing Wang, Huabing Yin, Yang Yue, Renato Zenobi, Jacopo Zini, Siddhant Tripathi, Roman Stocker
MicrobioRaman: an open-access web repository for microbiological Raman spectroscopy data. Nature microbiology 9 (5) (2024)
Hong-Zhe Li, Jing-Jing Peng, Kai Yang, Yiyue Zhang, Qing-Lin Chen, Yong-Guan Zhu, Li Cui
Single-cell exploration of active phosphate-solubilizing bacteria across diverse soil matrices for sustainable phosphorus management. Nature food (2024)
Xin-Yu Lu, Chen-Yue Wang, Hui Tang, Yi-Fei Qin, Li Cui, Xiang Wang, Guo-Kun Liu, Bin Ren
Patch-Based Convolutional Encoder: A Deep Learning Algorithm for Spectral Classification Balancing the Local and Global Information. Analytical chemistry (2024)
Kang Soo Lee, Zachary Landry, Awais Athar, Uria Alcolombri, Pratchaya Pramoj Na Ayutthaya, David Berry, Philippe de Bettignies, Ji-Xin Cheng, Gabor Csucs, Li Cui, Volker Deckert, Thomas Dieing, Jennifer Dionne, Ondrej Doskocil, Glen D'Souza, Cristina García-Timermans, Notburga Gierlinger, Keisuke Goda, Roland Hatzenpichler, Richard J Henshaw, Wei E Huang, Ievgeniia Iermak, Natalia P Ivleva, Janina Kneipp, Patrick Kubryk, Kirsten Küsel, Tae Kwon Lee, Sung Sik Lee, Bo Ma, Clara Martínez-Pérez, Pavel Matousek, Rainer U Meckenstock, Wei Min, Peter Mojzeš, Oliver Müller, Naresh Kumar, Per Halkjaer Nielsen, Ioan Notingher, Márton Palatinszky, Fátima C Pereira, Giuseppe Pezzotti, Zdenek Pilat, Filip Plesinger, Jürgen Popp, Alexander J Probst, Alessandra Riva, Amr A E Saleh, Ota Samek, Haley M Sapers, Olga T Schubert, Astrid K M Stubbusch, Loza F Tadesse, Gordon T Taylor, Michael Wagner, Jing Wang, Huabing Yin, Yang Yue, Renato Zenobi, Jacopo Zini, Siddhant Tripathi, Roman Stocker
MicrobioRaman: an open-access web repository for microbiological Raman spectroscopy data. Nature microbiology (2024)
Lin Xu, Xiao-Lan Yue, Hong-Zhe Li, Shu-Ling Jian, Wen-Sheng Shu, Li Cui, Xue-Wei Xu
Aerobic Anoxygenic Phototrophic Bacteria in the Marine Environments Revealed by Raman/Fluorescence-Guided Single-Cell Sorting and Targeted Metagenomics. Environmental science & technology 58 (16) (2024)
Hong-Zhe Li, Wen-Jing Li, Zi-Jian Wang, Qing-Lin Chen, Mia Kristine Staal Jensen, Min Qiao, Li Cui
Integrating Multiple Bacterial Phenotypes and Bayesian Network for Analyzing Health Risks of Pathogens in Plastisphere. Analytical chemistry 96 (28) (2024)
Kang Soo Lee, Zachary Landry, Awais Athar, Uria Alcolombri, Pratchaya Pramoj Na Ayutthaya, David Berry, Philippe de Bettignies, Ji-Xin Cheng, Gabor Csucs, Li Cui, Volker Deckert, Thomas Dieing, Jennifer Dionne, Ondrej Doskocil, Glen D'Souza, Cristina García-Timermans, Notburga Gierlinger, Keisuke Goda, Roland Hatzenpichler, Richard J Henshaw, Wei E Huang, Ievgeniia Iermak, Natalia P Ivleva, Janina Kneipp, Patrick Kubryk, Kirsten Küsel, Tae Kwon Lee, Sung Sik Lee, Bo Ma, Clara Martínez-Pérez, Pavel Matousek, Rainer U Meckenstock, Wei Min, Peter Mojzeš, Oliver Müller, Naresh Kumar, Per Halkjaer Nielsen, Ioan Notingher, Márton Palatinszky, Fátima C Pereira, Giuseppe Pezzotti, Zdenek Pilat, Filip Plesinger, Jürgen Popp, Alexander J Probst, Alessandra Riva, Amr A E Saleh, Ota Samek, Haley M Sapers, Olga T Schubert, Astrid K M Stubbusch, Loza F Tadesse, Gordon T Taylor, Michael Wagner, Jing Wang, Huabing Yin, Yang Yue, Renato Zenobi, Jacopo Zini, Siddhant Tripathi, Roman Stocker
MicrobioRaman: an open-access web repository for microbiological Raman spectroscopy data. Nature microbiology 9 (5) (2024)
Hong-Zhe Li, Jing-Jing Peng, Kai Yang, Yiyue Zhang, Qing-Lin Chen, Yong-Guan Zhu, Li Cui
Single-cell exploration of active phosphate-solubilizing bacteria across diverse soil matrices for sustainable phosphorus management. Nature food 5 (8) (2024)
Lin Xu, Xiao-Lan Yue, Hong-Zhe Li, Shu-Ling Jian, Wen-Sheng Shu, Li Cui, Xue-Wei Xu
Aerobic Anoxygenic Phototrophic Bacteria in the Marine Environments Revealed by Raman/Fluorescence-Guided Single-Cell Sorting and Targeted Metagenomics. Environmental science & technology 58 (16) (2024)
Hong-Zhe Li, Wen-Jing Li, Zi-Jian Wang, Qing-Lin Chen, Mia Kristine Staal Jensen, Min Qiao, Li Cui
Integrating Multiple Bacterial Phenotypes and Bayesian Network for Analyzing Health Risks of Pathogens in Plastisphere. Analytical chemistry 96 (28) (2024)
Li Cui, Yuhan Xin, Kai Yang, Hongzhe Li, Fengjiao Tan, Yulong Zhang, Xingrui Li, Zhi Zhu, Jun Yang, Shuh-Ji Kao, Bin Ren, Yong-Guan Zhu, Florin Musat, Niculina Musat
Live tracking metabolic networks and physiological responses within microbial assemblages at single-cell level. PNAS nexus 2 (3) (2023)
Hongzhe Li, Jiazhi Ding, Longji Zhu, Fei Xu, Wenjing Li, Yanpo Yao, Li Cui
Single-cell Raman and functional gene analyses reveal microbial P solubilization in agriculture waste-modified soils. mLife 2 (2) (2023)
Yifei Qin, Zheng Shi, Longji Zhu, Hongzhe Li, Wenjia Lu, Guozhu Ye, Qian-Sheng Huang, Li Cui
Impact of Airborne Pathogen-Derived Extracellular Vesicles on Macrophages Revealed by Raman Spectroscopy and Multiomics. Environmental science & technology (2023)
Li Cui, Yuhan Xin, Kai Yang, Hongzhe Li, Fengjiao Tan, Yulong Zhang, Xingrui Li, Zhi Zhu, Jun Yang, Shuh-Ji Kao, Bin Ren, Yong-Guan Zhu, Florin Musat, Niculina Musat
Live tracking metabolic networks and physiological responses within microbial assemblages at single-cell level. PNAS nexus 2 (3) (2023)
Hongzhe Li, Jiazhi Ding, Longji Zhu, Fei Xu, Wenjing Li, Yanpo Yao, Li Cui
Single-cell Raman and functional gene analyses reveal microbial P solubilization in agriculture waste-modified soils. mLife 2 (2) (2023)
Kai Yang, Fei Xu, Longji Zhu, Hongzhe Li, Qian Sun, Aixin Yan, Bin Ren, Yong-Guan Zhu, Li Cui
An Isotope-Labeled Single-Cell Raman Spectroscopy Approach for Tracking the Physiological Evolution Trajectory of Bacteria toward Antibiotic Resistance. Angewandte Chemie (International ed. in English) (2023)
Kai Yang, Fei Xu, Longji Zhu, Hongzhe Li, Qian Sun, Aixin Yan, Bin Ren, Yong-Guan Zhu, Li Cui
An Isotope-Labeled Single-Cell Raman Spectroscopy Approach for Tracking the Physiological Evolution Trajectory of Bacteria toward Antibiotic Resistance. Angewandte Chemie (International ed. in English) 62 (14) (2023)
Xiaohan Liu, Ping Li, Helin Wang, Li-Li Han, Kai Yang, Yanhong Wang, Zhou Jiang, Li Cui, Shuh-Ji Kao
Nitrogen fixation and diazotroph diversity in groundwater systems. The ISME journal (2023)
Claude Kiki, Dan Qin, Lin Liu, Min Qiao, Bob Adyari, Binessi Edouard Ifon, Adenike B E Adeoye, Longji Zhu, Li Cui, Qian Sun
Unraveling the Role of Microalgae in Mitigating Antibiotics and Antibiotic Resistance Genes in Photogranules Treating Antibiotic Wastewater. Environmental science & technology (2023)
Kai Yang, Fei Xu, Longji Zhu, Hongzhe Li, Qian Sun, Aixin Yan, Bin Ren, Yong-Guan Zhu, Li Cui
An Isotope-Labeled Single-Cell Raman Spectroscopy Approach for Tracking the Physiological Evolution Trajectory of Bacteria toward Antibiotic Resistance. Angewandte Chemie (International ed. in English) 62 (14) (2023)
Kai Yang, Fei Xu, Longji Zhu, Hongzhe Li, Qian Sun, Aixin Yan, Bin Ren, Yong-Guan Zhu, Li Cui
An Isotope-Labeled Single-Cell Raman Spectroscopy Approach for Tracking the Physiological Evolution Trajectory of Bacteria toward Antibiotic Resistance. Angewandte Chemie (International ed. in English) 62 (14) (2023)
Hong-Zhe Li, Kai Yang, Hu Liao, Simon Bo Lassen, Jian-Qiang Su, Xian Zhang, Li Cui, Yong-Guan Zhu
Active antibiotic resistome in soils unraveled by single-cell isotope probing and targeted metagenomics. Proceedings of the National Academy of Sciences of the United States of America 119 (40) (2022)
Yifei Qin, Zihan Guo, Haining Huang, Liting Zhu, Sijun Dong, Yong-Guan Zhu, Li Cui, Qian-Sheng Huang
Widespread of Potential Pathogen-Derived Extracellular Vesicles Carrying Antibiotic Resistance Genes in Indoor Dust. Environmental science & technology 56 (9) (2022)
Yi-Fei Qin, Xin-Yu Lu, Zheng Shi, Qian-Sheng Huang, Xiang Wang, Bin Ren, Li Cui
Deep Learning-Enabled Raman Spectroscopic Identification of Pathogen-Derived Extracellular Vesicles and the Biogenesis Process. Analytical chemistry 94 (36) (2022)
Xiaoyan Jing, Yanhai Gong, Huihui Pan, Yu Meng, Yishang Ren, Zhidian Diao, Runzhi Mu, Teng Xu, Jia Zhang, Yuetong Ji, Yuandong Li, Chen Wang, Lingyun Qu, Li Cui, Bo Ma, Jian Xu
Single-cell Raman-activated sorting and cultivation (scRACS-Culture) for assessing and mining in situ phosphate-solubilizing microbes from nature. ISME communications 2 (1) (2022)
Xiaoxuan Su, Li Cui, Yijia Tang, Teng Wen, Kai Yang, Yingmu Wang, Jinbo Zhang, Guibing Zhu, Xiao-Ru Yang, Lijun Hou, Yong-Guan Zhu
Denitrification and N 2 O Emission in Estuarine Sediments in Response to Ocean Acidification: From Process to Mechanism. Environmental science & technology 56 (20) (2022)
Ruilong Li, Longji Zhu, Kai Yang, Hongzhe Li, Yong-Guan Zhu, Li Cui
Impact of Urbanization on Antibiotic Resistome in Different Microplastics: Evidence from a Large-Scale Whole River Analysis. Environmental science & technology 55 (13) (2021)
Hong-Zhe Li, Dong Zhu, Jonathan Hessner Lindhardt, Shao-Min Lin, Xin Ke, Li Cui
Long-Term Fertilization History Alters Effects of Microplastics on Soil Properties, Microbial Communities, and Functions in Diverse Farmland Ecosystem. Environmental science & technology 55 (8) (2021)
Qing-Lin Chen, Hang-Wei Hu, Zi-Yang He, Li Cui, Yong-Guan Zhu, Ji-Zheng He
Potential of indigenous crop microbiomes for sustainable agriculture. Nature food 2 (4) (2021)
Qing-Lin Chen, Hang-Wei Hu, Zi-Yang He, Li Cui, Yong-Guan Zhu, Ji-Zheng He
Potential of indigenous crop microbiomes for sustainable agriculture. Nature food 2 (4) (2021)
Kai Yang, Qing-Lin Chen, Mo-Lian Chen, Hong-Zhe Li, Hu Liao, Qiang Pu, Yong-Guan Zhu, Li Cui
Temporal Dynamics of Antibiotic Resistome in the Plastisphere during Microbial Colonization. Environmental science & technology 54 (18) (2020)
Hong-Zhe Li, DanDan Zhang, Kai Yang, Xin-Li An, Qiang Pu, Shao-Min Lin, Jian-Qiang Su, Li Cui
Phenotypic Tracking of Antibiotic Resistance Spread via Transformation from Environment to Clinic by Reverse D2O Single-Cell Raman Probing. Analytical chemistry 92 (23) (2020)
Kai Yang, Hong-Zhe Li, Xuan Zhu, Jian-Qiang Su, Bin Ren, Yong-Guan Zhu, Li Cui
Rapid Antibiotic Susceptibility Testing of Pathogenic Bacteria Using Heavy-Water-Labeled Single-Cell Raman Spectroscopy in Clinical Samples. Analytical chemistry 91 (9) (2019)
Jian-Xin Xu, Xiao-Ming Li, Guo-Xin Sun, Li Cui, Long-Jun Ding, Chen He, Li-Guan Li, Quan Shi, Barth F Smets, Yong-Guan Zhu
Fate of Labile Organic Carbon in Paddy Soil Is Regulated by Microbial Ferric Iron Reduction. Environmental science & technology 53 (15) (2019)
Li Cui, DanDan Zhang, Kai Yang, Xian Zhang, Yong-Guan Zhu
Perspective on Surface-Enhanced Raman Spectroscopic Investigation of Microbial World. Analytical chemistry 91 (24) (2019)
Hong-Zhe Li, Qing-Fang Bi, Kai Yang, Bang-Xiao Zheng, Qiang Pu, Li Cui
D2O-Isotope-Labeling Approach to Probing Phosphate-Solubilizing Bacteria in Complex Soil Communities by Single-Cell Raman Spectroscopy. Analytical chemistry 91 (3) (2019)
Oladipo Oladiti Olaniyi, Kai Yang, Yong-Guan Zhu, Li Cui
Heavy water-labeled Raman spectroscopy reveals carboxymethylcellulose-degrading bacteria and degradation activity at the single-cell level. Applied microbiology and biotechnology 103 (3) (2018)
Qing-Lin Chen, Yong-Guan Zhu, Li Cui
Response to Comment on "Application of Struvite Alters the Antibiotic Resistome in Soil, Rhizosphere, and Phyllosphere". Environmental science & technology 52 (24) (2018)
Li Cui, Kai Yang, Hong-Zhe Li, Han Zhang, Jian-Qiang Su, Maria Paraskevaidi, Francis Luke Martin, Bin Ren, Yong-Guan Zhu
Functional Single-Cell Approach to Probing Nitrogen-Fixing Bacteria in Soil Communities by Resonance Raman Spectroscopy with 15N2 Labeling. Analytical chemistry 90 (8) (2018)
Li Cui, Kai Yang, Guowei Zhou, Wei E Huang, Yong-Guan Zhu
Surface-Enhanced Raman Spectroscopy Combined with Stable Isotope Probing to Monitor Nitrogen Assimilation at Both Bulk and Single-Cell Level. Analytical chemistry 89 (11) (2017)
Qing-Lin Chen, Xin-Li An, Yong-Guan Zhu, Jian-Qiang Su, Michael R Gillings, Zhi-Long Ye, Li Cui
Application of Struvite Alters the Antibiotic Resistome in Soil, Rhizosphere, and Phyllosphere. Environmental science & technology 51 (14) (2017)