David Berry

ResearcherID Scopus Author ID ORCID

Publication Activity (10 Years)

Years Active: 2013-2024
Publications (10 Years): 40

Top Venues

Environmental microbiology

Nature communications

Nature microbiology

International journal of molecular sciences

University of Vienna

University of Michigan (PHD)

This page only lists publications with an associated author ORCID identifier.

Affiliation History

University of Vienna Jan 01 2018

Austria

Full Professor :: Department of Microbiology and Ecosystem Science

University of Vienna Mar 01 2016 - Dec 31 2017

Austria

Associate Professor :: Department of Microbiology and Ecosystem Science

University of Vienna Sep 01 2012 - Feb 29 2016

Austria

Assistant Professor :: Microbiology and Ecosystem Science

University of Vienna Sep 01 2009 - Aug 31 2012

Austria

Postdoc :: Department of Microbial Ecology

Education History

University of Michigan Sep 01 2005 - Dec 20 2009

United States

PHD :: Civil and Environmental Engineering

Rutgers University New Brunswick Sep 01 2001 - Jun 01 2005

United States

BSC :: Bioresource Engineering

Publications

Kang Soo Lee, Zachary Landry, Awais Athar, Uria Alcolombri, Pratchaya Pramoj Na Ayutthaya, David Berry, Philippe de Bettignies, Ji-Xin Cheng, Gabor Csucs, Li Cui, Volker Deckert, Thomas Dieing, Jennifer Dionne, Ondrej Doskocil, Glen D'Souza, Cristina García-Timermans, Notburga Gierlinger, Keisuke Goda, Roland Hatzenpichler, Richard J Henshaw, Wei E Huang, Ievgeniia Iermak, Natalia P Ivleva, Janina Kneipp, Patrick Kubryk, Kirsten Küsel, Tae Kwon Lee, Sung Sik Lee, Bo Ma, Clara Martínez-Pérez, Pavel Matousek, Rainer U Meckenstock, Wei Min, Peter Mojzeš, Oliver Müller, Naresh Kumar, Per Halkjaer Nielsen, Ioan Notingher, Márton Palatinszky, Fátima C Pereira, Giuseppe Pezzotti, Zdenek Pilat, Filip Plesinger, Jürgen Popp, Alexander J Probst, Alessandra Riva, Amr A E Saleh, Ota Samek, Haley M Sapers, Olga T Schubert, Astrid K M Stubbusch, Loza F Tadesse, Gordon T Taylor, Michael Wagner, Jing Wang, Huabing Yin, Yang Yue, Renato Zenobi, Jacopo Zini, Siddhant Tripathi, Roman Stocker
MicrobioRaman: an open-access web repository for microbiological Raman spectroscopy data. Nature microbiology 9 (5) (2024)
Kang Soo Lee, Zachary Landry, Awais Athar, Uria Alcolombri, Pratchaya Pramoj Na Ayutthaya, David Berry, Philippe de Bettignies, Ji-Xin Cheng, Gabor Csucs, Li Cui, Volker Deckert, Thomas Dieing, Jennifer Dionne, Ondrej Doskocil, Glen D'Souza, Cristina García-Timermans, Notburga Gierlinger, Keisuke Goda, Roland Hatzenpichler, Richard J Henshaw, Wei E Huang, Ievgeniia Iermak, Natalia P Ivleva, Janina Kneipp, Patrick Kubryk, Kirsten Küsel, Tae Kwon Lee, Sung Sik Lee, Bo Ma, Clara Martínez-Pérez, Pavel Matousek, Rainer U Meckenstock, Wei Min, Peter Mojzeš, Oliver Müller, Naresh Kumar, Per Halkjaer Nielsen, Ioan Notingher, Márton Palatinszky, Fátima C Pereira, Giuseppe Pezzotti, Zdenek Pilat, Filip Plesinger, Jürgen Popp, Alexander J Probst, Alessandra Riva, Amr A E Saleh, Ota Samek, Haley M Sapers, Olga T Schubert, Astrid K M Stubbusch, Loza F Tadesse, Gordon T Taylor, Michael Wagner, Jing Wang, Huabing Yin, Yang Yue, Renato Zenobi, Jacopo Zini, Siddhant Tripathi, Roman Stocker
MicrobioRaman: an open-access web repository for microbiological Raman spectroscopy data. Nature microbiology 9 (5) (2024)
Kang Soo Lee, Zachary Landry, Awais Athar, Uria Alcolombri, Pratchaya Pramoj Na Ayutthaya, David Berry, Philippe de Bettignies, Ji-Xin Cheng, Gabor Csucs, Li Cui, Volker Deckert, Thomas Dieing, Jennifer Dionne, Ondrej Doskocil, Glen D'Souza, Cristina García-Timermans, Notburga Gierlinger, Keisuke Goda, Roland Hatzenpichler, Richard J Henshaw, Wei E Huang, Ievgeniia Iermak, Natalia P Ivleva, Janina Kneipp, Patrick Kubryk, Kirsten Küsel, Tae Kwon Lee, Sung Sik Lee, Bo Ma, Clara Martínez-Pérez, Pavel Matousek, Rainer U Meckenstock, Wei Min, Peter Mojzeš, Oliver Müller, Naresh Kumar, Per Halkjaer Nielsen, Ioan Notingher, Márton Palatinszky, Fátima C Pereira, Giuseppe Pezzotti, Zdenek Pilat, Filip Plesinger, Jürgen Popp, Alexander J Probst, Alessandra Riva, Amr A E Saleh, Ota Samek, Haley M Sapers, Olga T Schubert, Astrid K M Stubbusch, Loza F Tadesse, Gordon T Taylor, Michael Wagner, Jing Wang, Huabing Yin, Yang Yue, Renato Zenobi, Jacopo Zini, Siddhant Tripathi, Roman Stocker
MicrobioRaman: an open-access web repository for microbiological Raman spectroscopy data. Nature microbiology (2024)
Kang Soo Lee, Zachary Landry, Awais Athar, Uria Alcolombri, Pratchaya Pramoj Na Ayutthaya, David Berry, Philippe de Bettignies, Ji-Xin Cheng, Gabor Csucs, Li Cui, Volker Deckert, Thomas Dieing, Jennifer Dionne, Ondrej Doskocil, Glen D'Souza, Cristina García-Timermans, Notburga Gierlinger, Keisuke Goda, Roland Hatzenpichler, Richard J Henshaw, Wei E Huang, Ievgeniia Iermak, Natalia P Ivleva, Janina Kneipp, Patrick Kubryk, Kirsten Küsel, Tae Kwon Lee, Sung Sik Lee, Bo Ma, Clara Martínez-Pérez, Pavel Matousek, Rainer U Meckenstock, Wei Min, Peter Mojzeš, Oliver Müller, Naresh Kumar, Per Halkjaer Nielsen, Ioan Notingher, Márton Palatinszky, Fátima C Pereira, Giuseppe Pezzotti, Zdenek Pilat, Filip Plesinger, Jürgen Popp, Alexander J Probst, Alessandra Riva, Amr A E Saleh, Ota Samek, Haley M Sapers, Olga T Schubert, Astrid K M Stubbusch, Loza F Tadesse, Gordon T Taylor, Michael Wagner, Jing Wang, Huabing Yin, Yang Yue, Renato Zenobi, Jacopo Zini, Siddhant Tripathi, Roman Stocker
MicrobioRaman: an open-access web repository for microbiological Raman spectroscopy data. Nature microbiology 9 (5) (2024)
Alessandra Riva, Hamid Rasoulimehrabani, José Manuel Cruz-Rubio, Stephanie L Schnorr, Cornelia von Baeckmann, Deniz Inan, Georgi Nikolov, Craig W Herbold, Bela Hausmann, Petra Pjevac, Arno Schintlmeister, Andreas Spittler, Márton Palatinszky, Aida Kadunic, Norbert Hieger, Giorgia Del Favero, Martin Von Bergen, Nico Jehmlich, Margarete Watzka, Kang Soo Lee, Julia Wiesenbauer, Sanaz Khadem, Helmut Viernstein, Roman Stocker, Michael Wagner, Christina Kaiser, Andreas Richter, Freddy Kleitz, David Berry
Identification of inulin-responsive bacteria in the gut microbiota via multi-modal activity-based sorting. Nature communications 14 (1) (2023)
Kenneth N Timmis, David Berry, Paola Bonfante, Maureen Coleman, Michael Cunliffe, Antoine Danchin, Michael Galperin, Wei Huang, Puri Lopez, Frank Stewart, Tom Wood
Juan Luis Ramos: An exceptional Editor of Environmental Microbiology. Environmental microbiology 25 (3) (2023)
Alessandra Riva, Hamid Rasoulimehrabani, José Manuel Cruz-Rubio, Stephanie L Schnorr, Cornelia von Baeckmann, Deniz Inan, Georgi Nikolov, Craig W Herbold, Bela Hausmann, Petra Pjevac, Arno Schintlmeister, Andreas Spittler, Márton Palatinszky, Aida Kadunic, Norbert Hieger, Giorgia Del Favero, Martin Von Bergen, Nico Jehmlich, Margarete Watzka, Kang Soo Lee, Julia Wiesenbauer, Sanaz Khadem, Helmut Viernstein, Roman Stocker, Michael Wagner, Christina Kaiser, Andreas Richter, Freddy Kleitz, David Berry
Identification of inulin-responsive bacteria in the gut microbiota via multi-modal activity-based sorting. Nature communications 14 (1) (2023)
Alessandra Riva, Hamid Rasoulimehrabani, José Manuel Cruz-Rubio, Stephanie L Schnorr, Cornelia von Baeckmann, Deniz Inan, Georgi Nikolov, Craig W Herbold, Bela Hausmann, Petra Pjevac, Arno Schintlmeister, Andreas Spittler, Márton Palatinszky, Aida Kadunic, Norbert Hieger, Giorgia Del Favero, Martin Von Bergen, Nico Jehmlich, Margarete Watzka, Kang Soo Lee, Julia Wiesenbauer, Sanaz Khadem, Helmut Viernstein, Roman Stocker, Michael Wagner, Christina Kaiser, Andreas Richter, Freddy Kleitz, David Berry
Identification of inulin-responsive bacteria in the gut microbiota via multi-modal activity-based sorting. Nature communications 14 (1) (2023)
Fátima C Pereira, Xiaowei Ge, Jannie Munk Kristensen, Rasmus Hansen Kirkegaard, Klara Maritsch, Yifan Zhu, Marie Decorte, Bela Hausmann, David Berry, Kenneth Wasmund, Arno Schintlmeister, Thomas Boettcher, Ji-Xin Cheng, Michael Wagner
The Parkinson's drug entacapone disrupts gut microbiome homeostasis via iron sequestration. bioRxiv : the preprint server for biology (2023)
José Manuel Cruz-Rubio, Alessandra Riva, Justyna Cybulska, Artur Zdunek, David Berry, Renate Loeppert, Helmut Viernstein, Werner Praznik, Fatemeh Maghuly
Neutral and Pectic Heteropolysaccharides Isolated from Opuntia joconostle Mucilage: Composition, Molecular Dimensions and Prebiotic Potential. International journal of molecular sciences 24 (4) (2023)
José Manuel Cruz-Rubio, Alessandra Riva, Justyna Cybulska, Artur Zdunek, David Berry, Renate Loeppert, Helmut Viernstein, Werner Praznik, Fatemeh Maghuly
Neutral and Pectic Heteropolysaccharides Isolated from Opuntia joconostle Mucilage: Composition, Molecular Dimensions and Prebiotic Potential. International journal of molecular sciences 24 (4) (2023)
José Manuel Cruz-Rubio, Alessandra Riva, Justyna Cybulska, Artur Zdunek, David Berry, Renate Loeppert, Helmut Viernstein, Werner Praznik, Fatemeh Maghuly
Neutral and Pectic Heteropolysaccharides Isolated from Opuntia joconostle Mucilage: Composition, Molecular Dimensions and Prebiotic Potential. International journal of molecular sciences 24 (4) (2023)
Kenneth N Timmis, David Berry, Paola Bonfante, Maureen Coleman, Michael Cunliffe, Antoine Danchin, Michael Galperin, Wei Huang, Puri Lopez, Frank Stewart, Tom Wood
Juan Luis Ramos: An exceptional Editor of Environmental Microbiology. Environmental microbiology 25 (3) (2023)
Kenneth N Timmis, David Berry, Paola Bonfante, Maureen Coleman, Michael Cunliffe, Antoine Danchin, Michael Galperin, Wei Huang, Puri Lopez, Frank Stewart, Tom Wood
Juan Luis Ramos: An exceptional Editor of Environmental Microbiology. Environmental microbiology 25 (3) (2023)
Alessandra Riva, Hamid Rasoulimehrabani, José Manuel Cruz-Rubio, Stephanie L Schnorr, Cornelia von Baeckmann, Deniz Inan, Georgi Nikolov, Craig W Herbold, Bela Hausmann, Petra Pjevac, Arno Schintlmeister, Andreas Spittler, Márton Palatinszky, Aida Kadunic, Norbert Hieger, Giorgia Del Favero, Martin Von Bergen, Nico Jehmlich, Margarete Watzka, Kang Soo Lee, Julia Wiesenbauer, Sanaz Khadem, Helmut Viernstein, Roman Stocker, Michael Wagner, Christina Kaiser, Andreas Richter, Freddy Kleitz, David Berry
Identification of inulin-responsive bacteria in the gut microbiota via multi-modal activity-based sorting. Nature communications 14 (1) (2023)
Nadine Bayer, Bela Hausmann, Ram Vinay Pandey, Florian Deckert, Laura-Marie Gail, Johanna Strobl, Petra Pjevac, Christoph Krall, Luisa Unterluggauer, Anna Redl, Victoria Bachmayr, Lisa Kleissl, Marion Nehr, Rasmus Hansen Kirkegaard, Athanasios Makristathis, Martin L Watzenboeck, Robert Nica, Clement Staud, Lukas Hammerl, Philipp Wohlfarth, Rupert C Ecker, Sylvia Knapp, Werner Rabitsch, David Berry, Georg Stary
Correction: Disturbances in microbial skin recolonization and cutaneous immune response following allogeneic stem cell transfer. Leukemia (2023)
José Manuel Cruz-Rubio, Alessandra Riva, Justyna Cybulska, Artur Zdunek, David Berry, Renate Loeppert, Helmut Viernstein, Werner Praznik, Fatemeh Maghuly
Neutral and Pectic Heteropolysaccharides Isolated from Opuntia joconostle Mucilage: Composition, Molecular Dimensions and Prebiotic Potential. International journal of molecular sciences 24 (4) (2023)
Kenneth N Timmis, David Berry, Paola Bonfante, Maureen Coleman, Michael Cunliffe, Antoine Danchin, Michael Galperin, Wei Huang, Puri Lopez, Frank Stewart, Tom Wood
Juan Luis Ramos: An exceptional Editor of Environmental Microbiology. Environmental microbiology 25 (3) (2023)
Alessandra Riva, Hamid Rasoulimehrabani, José Manuel Cruz-Rubio, Stephanie L Schnorr, Cornelia von Baeckmann, Deniz Inan, Georgi Nikolov, Craig W Herbold, Bela Hausmann, Petra Pjevac, Arno Schintlmeister, Andreas Spittler, Márton Palatinszky, Aida Kadunic, Norbert Hieger, Giorgia Del Favero, Martin Von Bergen, Nico Jehmlich, Margarete Watzka, Kang Soo Lee, Julia Wiesenbauer, Sanaz Khadem, Helmut Viernstein, Roman Stocker, Michael Wagner, Christina Kaiser, Andreas Richter, Freddy Kleitz, David Berry
Identification of inulin-responsive bacteria in the gut microbiota via multi-modal activity-based sorting. Nature communications 14 (1) (2023)
Annelieke Overbeeke, Michaela Lang, Bela Hausmann, Margarete Watzka, Georgi Nikolov, Jasmin Schwarz, Gudrun Kohl, Kim De Paepe, Kevin Eislmayr, Thomas Decker, Andreas Richter, David Berry
Impaired Mucosal Homeostasis in Short-Term Fiber Deprivation Is Due to Reduced Mucus Production Rather Than Overgrowth of Mucus-Degrading Bacteria. Nutrients 14 (18) (2022)
Diogo Carregosa, Catarina Pinto, María Ángeles Ávila-Gálvez, Paulo André Dias Bastos, David Berry, Claudia Nunes Dos Santos
A look beyond dietary (poly)phenols: The low molecular weight phenolic metabolites and their concentrations in human circulation. Comprehensive reviews in food science and food safety 21 (5) (2022)
Kenneth N Timmis, David Berry, Paola Bonfante, Maureen Coleman, Michael Cunliffe, Antoine Danchin, Michael Galperin, Wei Huang, Puri Lopez, Frank Stewart, Tom Wood
Juan Luis Ramos: An exceptional Editor of Environmental Microbiology. Environmental microbiology (2022)
Nadine Bayer, Bela Hausmann, Ram Vinay Pandey, Florian Deckert, Laura-Marie Gail, Johanna Strobl, Petra Pjevac, Christoph Krall, Luisa Unterluggauer, Anna Redl, Victoria Bachmayr, Lisa Kleissl, Marion Nehr, Rasmus Hansen Kirkegaard, Athanasios Makristathis, Martin L Watzenboeck, Robert Nica, Clement Staud, Lukas Hammerl, Philipp Wohlfarth, Rupert C Ecker, Sylvia Knapp, Werner Rabitsch, David Berry, Georg Stary
Disturbances in microbial skin recolonization and cutaneous immune response following allogeneic stem cell transfer. Leukemia 36 (11) (2022)
Thomas Jamnik, Mira Flasch, Dominik Braun, Yasmin Fareed, Daniel Wasinger, David Seki, David Berry, Angelika Berger, Lukas Wisgrill, Benedikt Warth
Next-generation biomonitoring of the early-life chemical exposome in neonatal and infant development. Nature communications 13 (1) (2022)
Kenneth N Timmis, David Berry, Paola Bonfante, Michael Cunliffe, Antoine Danchin, Michael Galperin, Puri Lopez, Frank Stewart, Tom Wood
Juan Luis Ramos: an exceptional Editor of Environmental Microbiology. Environmental microbiology (2022)
Uria Alcolombri, Roberto Pioli, Roman Stocker, David Berry
Single-cell stable isotope probing in microbial ecology. ISME communications 2 (1) (2022)
Christoph Binder, Hannah Schned, Nicholas Longford, Eva Schwindt, Margarita Thanhaeuser, Alexandra Thajer, Katharina Goeral, Matteo Tardelli, David Berry, Lukas Wisgrill, David Seki, Angelika Berger, Katrin Klebermass-Schrehof, Andreas Repa, Vito Giordano
A Mixed-Lipid Emulsion Containing Fish Oil for the Parenteral Nutrition of Preterm Infants: No Impact on Visual Neuronal Conduction. Nutrients 13 (12) (2021)
Jovana Mihajlovic, Michael Leutner, Bela Hausmann, Gudrun Kohl, Jasmin Schwarz, Hannah Röver, Nina Stimakovits, Peter Wolf, Katharina Maruszczak, Magdalena Bastian, Alexandra Kautzky-Willer, David Berry
Combined hormonal contraceptives are associated with minor changes in composition and diversity in gut microbiota of healthy women. Environmental microbiology 23 (6) (2021)
Fátima C Pereira, Kenneth Wasmund, Iva Cobankovic, Nico Jehmlich, Craig W Herbold, Kang Soo Lee, Barbara Sziranyi, Cornelia Vesely, Thomas Decker, Roman Stocker, Benedikt Warth, Martin von Bergen, Michael Wagner, David Berry
Rational design of a microbial consortium of mucosal sugar utilizers reduces Clostridiodes difficile colonization. Nature communications 11 (1) (2020)
Kang Soo Lee, Fátima C Pereira, Márton Palatinszky, Lars Behrendt, Uria Alcolombri, David Berry, Michael Wagner, Roman Stocker
Optofluidic Raman-activated cell sorting for targeted genome retrieval or cultivation of microbial cells with specific functions. Nature protocols 16 (2) (2020)
Francesco Crudo, Georg Aichinger, Jovana Mihajlovic, Luca Dellafiora, Elisabeth Varga, Hannes Puntscher, Benedikt Warth, Chiara Dall'Asta, David Berry, Doris Marko
Gut microbiota and undigested food constituents modify toxin composition and suppress the genotoxicity of a naturally occurring mixture of Alternaria toxins in vitro. Archives of toxicology 94 (10) (2020)
Kang Soo Lee, Márton Palatinszky, Fátima C Pereira, Jen Nguyen, Vicente I Fernandez, Anna J Mueller, Filippo Menolascina, Holger Daims, David Berry, Michael Wagner, Roman Stocker
An automated Raman-based platform for the sorting of live cells by functional properties. Nature microbiology 4 (6) (2019)
Alessandra Riva, Orest Kuzyk, Erica M Forsberg, Gary E Siuzdak, Carina Pfann, Craig Herbold, Holger Daims, Alexander Loy, Benedikt Warth, David Berry
A fiber-deprived diet disturbs the fine-scale spatial architecture of the murine colon microbiome. Nature communications 10 (1) (2019)
Astrid C Erber, Hakan Cetin, David Berry, Eva S Schernhammer
The role of gut microbiota, butyrate and proton pump inhibitors in amyotrophic lateral sclerosis: a systematic review. The International journal of neuroscience 130 (7) (2019)
Tamara Bakuradze, Angelina Tausend, Jens Galan, Isabel Anna Maria Groh, David Berry, Josep Antonio Tur, Doris Marko, Elke Richling
Antioxidative activity and health benefits of anthocyanin-rich fruit juice in healthy volunteers. Free radical research 53 (sup1) (2019)
Laure Weisskopf, Irene L G Newton, David Berry, Nicole Suzanne Webster
Spotlight on how microbes influence their host's behavior. Environmental microbiology (2019)
David Berry
Up-close-and-personal with the human microbiome. Environmental microbiology reports 11 (1) (2018)
Aspen T Reese, Fátima C Pereira, Arno Schintlmeister, David Berry, Michael Wagner, Laura P Hale, Anchi Wu, Sharon Jiang, Heather K Durand, Xiyou Zhou, Richard T Premont, Anna Mae Diehl, Thomas M O'Connell, Susan C Alberts, Tyler R Kartzinel, Robert M Pringle, Robert R Dunn, Justin P Wright, Lawrence A David
Microbial nitrogen limitation in the mammalian large intestine. Nature microbiology 3 (12) (2018)
Fátima C Pereira, David Berry
Microbial nutrient niches in the gut. Environmental microbiology 19 (4) (2017)
David Berry
The emerging view of Firmicutes as key fibre degraders in the human gut. Environmental microbiology 18 (7) (2016)
Sara Mishamandani, Tony Gutierrez, David Berry, Michael D Aitken
Response of the bacterial community associated with a cosmopolitan marine diatom to crude oil shows a preference for the biodegradation of aromatic hydrocarbons. Environmental microbiology 18 (6) (2015)
Clarissa Schwab, David Berry, Isabella Rauch, Ina Rennisch, Julia Ramesmayer, Eva Hainzl, Susanne Heider, Thomas Decker, Lukas Kenner, Mathias Müller, Birgit Strobl, Michael Wagner, Christa Schleper, Alexander Loy, Tim Urich
Longitudinal study of murine microbiota activity and interactions with the host during acute inflammation and recovery. The ISME journal 8 (5) (2014)
Hannelore Daniel, Amin Moghaddas Gholami, David Berry, Charles Desmarchelier, Hannes Hahne, Gunnar Loh, Stanislas Mondot, Patricia Lepage, Michael Rothballer, Alesia Walker, Christoph Böhm, Mareike Wenning, Michael Wagner, Michael Blaut, Philippe Schmitt-Kopplin, Bernhard Kuster, Dirk Haller, Thomas Clavel
High-fat diet alters gut microbiota physiology in mice. The ISME journal 8 (2) (2013)
Albert Leopold Müller, Júlia Rosa de Rezende, Casey R J Hubert, Kasper Urup Kjeldsen, Ilias Lagkouvardos, David Berry, Bo Barker Jørgensen, Alexander Loy
Endospores of thermophilic bacteria as tracers of microbial dispersal by ocean currents. The ISME journal 8 (6) (2013)

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Publication Activity (10 Years)

Top Topics

Top Venues

David Berry