Per Halkjaer Nielsen (P H Nielsen, Per H Nielsen, Per Halkjær Nielsen)

ResearcherID ORCID

Publication Activity (10 Years)

Years Active: 2015-2024
Publications (10 Years): 43

Top Venues

The ISME journal

Nature communications

Nature microbiology

mSystems

Aalborg University

This page only lists publications with an associated author ORCID identifier.

Affiliation History

Aalborg University

Denmark

Professor, Head of Center :: Center for Microbial Communities, Dept. Chemistry and Bioscience

Publications

Morten Simonsen Dueholm, Kasper Skytte Andersen, Anne-Kirstine C Korntved, Vibeke Rudkjøbing, Madalena Alves, Yadira Bajón Fernández, Damien Batstone, Caitlyn Butler, Mercedes Cecilia Cruz, Åsa Davidsson, Leonardo Erijman, Christof Holliger, Konrad Koch, Norbert Kreuzinger, Changsoo Lee, Gerasimos Lyberatos, Srikanth Mutnuri, Vincent O'Flaherty, Piotr Oleskowicz-Popiel, Dana Pokorna, Veronica Rajal, Michael Recktenwald, Jorge Rodríguez, Pascal E Saikaly, Nick Tooker, Julia Vierheilig, Jo De Vrieze, Christian Wurzbacher, Per Halkjaer Nielsen
MiDAS 5: Global diversity of bacteria and archaea in anaerobic digesters. Nature communications 15 (1) (2024)
Morten Simonsen Dueholm, Kasper Skytte Andersen, Anne-Kirstine C Korntved, Vibeke Rudkjøbing, Madalena Alves, Yadira Bajón Fernández, Damien Batstone, Caitlyn Butler, Mercedes Cecilia Cruz, Åsa Davidsson, Leonardo Erijman, Christof Holliger, Konrad Koch, Norbert Kreuzinger, Changsoo Lee, Gerasimos Lyberatos, Srikanth Mutnuri, Vincent O'Flaherty, Piotr Oleskowicz-Popiel, Dana Pokorna, Veronica Rajal, Michael Recktenwald, Jorge Rodríguez, Pascal E Saikaly, Nick Tooker, Julia Vierheilig, Jo De Vrieze, Christian Wurzbacher, Per Halkjaer Nielsen
MiDAS 5: Global diversity of bacteria and archaea in anaerobic digesters. Nature communications 15 (1) (2024)
Morten Simonsen Dueholm, Kasper Skytte Andersen, Anne-Kirstine C Korntved, Vibeke Rudkjøbing, Madalena Alves, Yadira Bajón Fernández, Damien Batstone, Caitlyn Butler, Mercedes Cecilia Cruz, Åsa Davidsson, Leonardo Erijman, Christof Holliger, Konrad Koch, Norbert Kreuzinger, Changsoo Lee, Gerasimos Lyberatos, Srikanth Mutnuri, Vincent O'Flaherty, Piotr Oleskowicz-Popiel, Dana Pokorna, Veronica Rajal, Michael Recktenwald, Jorge Rodríguez, Pascal E Saikaly, Nick Tooker, Julia Vierheilig, Jo De Vrieze, Christian Wurzbacher, Per Halkjaer Nielsen
MiDAS 5: Global diversity of bacteria and archaea in anaerobic digesters. Nature communications 15 (1) (2024)
Márton Palatinszky, Craig W Herbold, Christopher J Sedlacek, Dominic Pühringer, Katharina Kitzinger, Andrew T Giguere, Kenneth Wasmund, Per Halkjaer Nielsen, Morten Simonsen Dueholm, Nico Jehmlich, Richard Gruseck, Anton A Legin, Julius Kostan, Nesrete Krasnici, Claudia Schreiner, Johanna Wiesinger, Thilo Hofmann, Michael T Zumstein, Kristina Djinovic-Carugo, Holger Daims, Michael Wagner
Growth of complete ammonia oxidizers on guanidine. Nature (2024)
Shino Suzuki, Shun'ichi Ishii, Grayson L Chadwick, Yugo Tanaka, Atsushi Kouzuma, Kazuya Watanabe, Fumio Inagaki, Mads Albertsen, Per Halkjaer Nielsen, Kenneth H Nealson
A non-methanogenic archaeon within the order Methanocellales. Nature communications 15 (1) (2024)
Kenneth Wasmund, Caitlin Margaret Singleton, Morten Kam Dahl Dueholm, Michael Wagner, Per Halkjaer Nielsen
The predicted secreted proteome of activated sludge microorganisms indicates distinct nutrient niches. mSystems (2024)
Kang Soo Lee, Zachary Landry, Awais Athar, Uria Alcolombri, Pratchaya Pramoj Na Ayutthaya, David Berry, Philippe de Bettignies, Ji-Xin Cheng, Gabor Csucs, Li Cui, Volker Deckert, Thomas Dieing, Jennifer Dionne, Ondrej Doskocil, Glen D'Souza, Cristina García-Timermans, Notburga Gierlinger, Keisuke Goda, Roland Hatzenpichler, Richard J Henshaw, Wei E Huang, Ievgeniia Iermak, Natalia P Ivleva, Janina Kneipp, Patrick Kubryk, Kirsten Küsel, Tae Kwon Lee, Sung Sik Lee, Bo Ma, Clara Martínez-Pérez, Pavel Matousek, Rainer U Meckenstock, Wei Min, Peter Mojzeš, Oliver Müller, Naresh Kumar, Per Halkjaer Nielsen, Ioan Notingher, Márton Palatinszky, Fátima C Pereira, Giuseppe Pezzotti, Zdenek Pilat, Filip Plesinger, Jürgen Popp, Alexander J Probst, Alessandra Riva, Amr A E Saleh, Ota Samek, Haley M Sapers, Olga T Schubert, Astrid K M Stubbusch, Loza F Tadesse, Gordon T Taylor, Michael Wagner, Jing Wang, Huabing Yin, Yang Yue, Renato Zenobi, Jacopo Zini, Siddhant Tripathi, Roman Stocker
MicrobioRaman: an open-access web repository for microbiological Raman spectroscopy data. Nature microbiology 9 (5) (2024)
Kang Soo Lee, Zachary Landry, Awais Athar, Uria Alcolombri, Pratchaya Pramoj Na Ayutthaya, David Berry, Philippe de Bettignies, Ji-Xin Cheng, Gabor Csucs, Li Cui, Volker Deckert, Thomas Dieing, Jennifer Dionne, Ondrej Doskocil, Glen D'Souza, Cristina García-Timermans, Notburga Gierlinger, Keisuke Goda, Roland Hatzenpichler, Richard J Henshaw, Wei E Huang, Ievgeniia Iermak, Natalia P Ivleva, Janina Kneipp, Patrick Kubryk, Kirsten Küsel, Tae Kwon Lee, Sung Sik Lee, Bo Ma, Clara Martínez-Pérez, Pavel Matousek, Rainer U Meckenstock, Wei Min, Peter Mojzeš, Oliver Müller, Naresh Kumar, Per Halkjaer Nielsen, Ioan Notingher, Márton Palatinszky, Fátima C Pereira, Giuseppe Pezzotti, Zdenek Pilat, Filip Plesinger, Jürgen Popp, Alexander J Probst, Alessandra Riva, Amr A E Saleh, Ota Samek, Haley M Sapers, Olga T Schubert, Astrid K M Stubbusch, Loza F Tadesse, Gordon T Taylor, Michael Wagner, Jing Wang, Huabing Yin, Yang Yue, Renato Zenobi, Jacopo Zini, Siddhant Tripathi, Roman Stocker
MicrobioRaman: an open-access web repository for microbiological Raman spectroscopy data. Nature microbiology 9 (5) (2024)
Kang Soo Lee, Zachary Landry, Awais Athar, Uria Alcolombri, Pratchaya Pramoj Na Ayutthaya, David Berry, Philippe de Bettignies, Ji-Xin Cheng, Gabor Csucs, Li Cui, Volker Deckert, Thomas Dieing, Jennifer Dionne, Ondrej Doskocil, Glen D'Souza, Cristina García-Timermans, Notburga Gierlinger, Keisuke Goda, Roland Hatzenpichler, Richard J Henshaw, Wei E Huang, Ievgeniia Iermak, Natalia P Ivleva, Janina Kneipp, Patrick Kubryk, Kirsten Küsel, Tae Kwon Lee, Sung Sik Lee, Bo Ma, Clara Martínez-Pérez, Pavel Matousek, Rainer U Meckenstock, Wei Min, Peter Mojzeš, Oliver Müller, Naresh Kumar, Per Halkjaer Nielsen, Ioan Notingher, Márton Palatinszky, Fátima C Pereira, Giuseppe Pezzotti, Zdenek Pilat, Filip Plesinger, Jürgen Popp, Alexander J Probst, Alessandra Riva, Amr A E Saleh, Ota Samek, Haley M Sapers, Olga T Schubert, Astrid K M Stubbusch, Loza F Tadesse, Gordon T Taylor, Michael Wagner, Jing Wang, Huabing Yin, Yang Yue, Renato Zenobi, Jacopo Zini, Siddhant Tripathi, Roman Stocker
MicrobioRaman: an open-access web repository for microbiological Raman spectroscopy data. Nature microbiology (2024)
Kang Soo Lee, Zachary Landry, Awais Athar, Uria Alcolombri, Pratchaya Pramoj Na Ayutthaya, David Berry, Philippe de Bettignies, Ji-Xin Cheng, Gabor Csucs, Li Cui, Volker Deckert, Thomas Dieing, Jennifer Dionne, Ondrej Doskocil, Glen D'Souza, Cristina García-Timermans, Notburga Gierlinger, Keisuke Goda, Roland Hatzenpichler, Richard J Henshaw, Wei E Huang, Ievgeniia Iermak, Natalia P Ivleva, Janina Kneipp, Patrick Kubryk, Kirsten Küsel, Tae Kwon Lee, Sung Sik Lee, Bo Ma, Clara Martínez-Pérez, Pavel Matousek, Rainer U Meckenstock, Wei Min, Peter Mojzeš, Oliver Müller, Naresh Kumar, Per Halkjaer Nielsen, Ioan Notingher, Márton Palatinszky, Fátima C Pereira, Giuseppe Pezzotti, Zdenek Pilat, Filip Plesinger, Jürgen Popp, Alexander J Probst, Alessandra Riva, Amr A E Saleh, Ota Samek, Haley M Sapers, Olga T Schubert, Astrid K M Stubbusch, Loza F Tadesse, Gordon T Taylor, Michael Wagner, Jing Wang, Huabing Yin, Yang Yue, Renato Zenobi, Jacopo Zini, Siddhant Tripathi, Roman Stocker
MicrobioRaman: an open-access web repository for microbiological Raman spectroscopy data. Nature microbiology 9 (5) (2024)
Márton Palatinszky, Craig W Herbold, Christopher J Sedlacek, Dominic Pühringer, Katharina Kitzinger, Andrew T Giguere, Kenneth Wasmund, Per Halkjaer Nielsen, Morten Simonsen Dueholm, Nico Jehmlich, Richard Gruseck, Anton A Legin, Julius Kostan, Nesrete Krasnici, Claudia Schreiner, Johanna Wiesinger, Thilo Hofmann, Michael T Zumstein, Kristina Djinovic-Carugo, Holger Daims, Michael Wagner
Growth of complete ammonia oxidizers on guanidine. Nature (2024)
Shino Suzuki, Shun'ichi Ishii, Grayson L Chadwick, Yugo Tanaka, Atsushi Kouzuma, Kazuya Watanabe, Fumio Inagaki, Mads Albertsen, Per Halkjaer Nielsen, Kenneth H Nealson
A non-methanogenic archaeon within the order Methanocellales. Nature communications 15 (1) (2024)
Shino Suzuki, Shun'ichi Ishii, Grayson L Chadwick, Yugo Tanaka, Atsushi Kouzuma, Kazuya Watanabe, Fumio Inagaki, Mads Albertsen, Per Halkjaer Nielsen, Kenneth H Nealson
A non-methanogenic archaeon within the order Methanocellales. Nature communications 15 (1) (2024)
Mantas Sereika, Francesca Petriglieri, Thomas Bygh Nymann Jensen, Artur Sannikov, Morten Hoppe, Per Halkjaer Nielsen, Ian P G Marshall, Andreas Schramm, Mads Albertsen
Closed genomes uncover a saltwater species of Candidatus Electronema and shed new light on the boundary between marine and freshwater cable bacteria. The ISME journal 17 (4) (2023)
Mantas Sereika, Francesca Petriglieri, Thomas Bygh Nymann Jensen, Artur Sannikov, Morten Hoppe, Per Halkjaer Nielsen, Ian P G Marshall, Andreas Schramm, Mads Albertsen
Closed genomes uncover a saltwater species of Candidatus Electronema and shed new light on the boundary between marine and freshwater cable bacteria. The ISME journal 17 (4) (2023)
Francesca Petriglieri, Zivile Kondrotaite, Caitlin Margaret Singleton, Marta Nierychlo, Morten Simonsen Dueholm, Per Halkjaer Nielsen
A comprehensive overview of the Chloroflexota community in wastewater treatment plants worldwide. mSystems (2023)
Maarten D Verhoeven, Per Halkjaer Nielsen, Morten Simonsen Dueholm
Amplicon-guided isolation and cultivation of previously uncultured microbial species from activated sludge. Applied and environmental microbiology (2023)
Mantas Sereika, Francesca Petriglieri, Thomas Bygh Nymann Jensen, Artur Sannikov, Morten Hoppe, Per Halkjaer Nielsen, Ian P G Marshall, Andreas Schramm, Mads Albertsen
Closed genomes uncover a saltwater species of Candidatus Electronema and shed new light on the boundary between marine and freshwater cable bacteria. The ISME journal 17 (4) (2023)
Mantas Sereika, Francesca Petriglieri, Thomas Bygh Nymann Jensen, Artur Sannikov, Morten Hoppe, Per Halkjaer Nielsen, Ian P G Marshall, Andreas Schramm, Mads Albertsen
Closed genomes uncover a saltwater species of Candidatus Electronema and shed new light on the boundary between marine and freshwater cable bacteria. The ISME journal (2023)
Hans-Curt Flemming, Eric D van Hullebusch, Thomas R Neu, Per Halkjaer Nielsen, Thomas Seviour, Paul Stoodley, Jost Wingender, Stefan Wuertz
The biofilm matrix: multitasking in a shared space. Nature reviews. Microbiology (2022)
Morten Simonsen Dueholm, Marta Nierychlo, Kasper Skytte Andersen, Vibeke Rudkjøbing, Simon Knutsson, null null, Mads Albertsen, Per Halkjaer Nielsen
MiDAS 4: A global catalogue of full-length 16S rRNA gene sequences and taxonomy for studies of bacterial communities in wastewater treatment plants. Nature communications 13 (1) (2022)
Caitlin Margaret Singleton, F Petriglieri, K Wasmund, M Nierychlo, Zivile Kondrotaite, J F Petersen, Miriam Peces, Morten Simonsen Dueholm, Michael Wagner, Per Halkjaer Nielsen
The novel genus, 'Candidatus Phosphoribacter', previously identified as Tetrasphaera, is the dominant polyphosphate accumulating lineage in EBPR wastewater treatment plants worldwide. The ISME journal 16 (6) (2022)
Morten Simonsen Dueholm, Marta Nierychlo, Kasper Skytte Andersen, Vibeke Rudkjøbing, Simon Knutsson, null null, Mads Albertsen, Per Halkjaer Nielsen
Author Correction: MiDAS 4: A global catalogue of full-length 16S rRNA gene sequences and taxonomy for studies of bacterial communities in wastewater treatment plants. Nature communications 13 (1) (2022)
Miriam Peces, Giulia Dottorini, Marta Nierychlo, Kasper Skytte Andersen, Morten Simonsen Dueholm, Per Halkjaer Nielsen
Microbial communities across activated sludge plants show recurring species-level seasonal patterns. ISME communications 2 (1) (2022)
Francesca Petriglieri, Caitlin Margaret Singleton, Zivile Kondrotaite, Morten Simonsen Dueholm, Elizabeth A McDaniel, Katherine D McMahon, Per Halkjaer Nielsen
Reevaluation of the Phylogenetic Diversity and Global Distribution of the Genus " Candidatus Accumulibacter". mSystems 7 (3) (2022)
Caitlin Margaret Singleton, Francesca Petriglieri, Jannie M Kristensen, Rasmus H Kirkegaard, Thomas Y Michaelsen, Martin H Andersen, Zivile Kondrotaite, Søren M Karst, Morten Simonsen Dueholm, Per Halkjaer Nielsen, Mads Albertsen
Connecting structure to function with the recovery of over 1000 high-quality metagenome-assembled genomes from activated sludge using long-read sequencing. Nature communications 12 (1) (2021)
Giulia Dottorini, Thomas Yssing Michaelsen, Sergey Kucheryavskiy, Kasper Skytte Andersen, Jannie Munk Kristensen, Miriam Peces, Dorottya Sarolta Wagner, Marta Nierychlo, Per Halkjaer Nielsen
Mass-immigration determines the assembly of activated sludge microbial communities. Proceedings of the National Academy of Sciences of the United States of America 118 (27) (2021)
Francesca Petriglieri, Caitlin Margaret Singleton, Miriam Peces, Jette F Petersen, Marta Nierychlo, Per Halkjaer Nielsen
"Candidatus Dechloromonas phosphoritropha" and "Ca. D. phosphorivorans", novel polyphosphate accumulating organisms abundant in wastewater treatment systems. The ISME journal 15 (12) (2021)
Per Halkjaer Nielsen, Caitlin Margaret Singleton
Parasitic bacteria control foam formation. Nature microbiology 6 (6) (2021)
Liping Hao, Thomas Yssing Michaelsen, Caitlin Margaret Singleton, Giulia Dottorini, Rasmus Hansen Kirkegaard, Mads Albertsen, Per Halkjaer Nielsen, Morten Simonsen Dueholm
Novel syntrophic bacteria in full-scale anaerobic digesters revealed by genome-centric metatranscriptomics. The ISME journal 14 (4) (2020)
Anne Daebeler, Katharina Kitzinger, Hanna Koch, Craig W Herbold, Michaela Steinfeder, Jasmin Schwarz, Thomas Zechmeister, Søren M Karst, Mads Albertsen, Per Halkjaer Nielsen, Michael Wagner, Holger Daims
Exploring the upper pH limits of nitrite oxidation: diversity, ecophysiology, and adaptive traits of haloalkalitolerant Nitrospira. The ISME journal 14 (12) (2020)
Susan Hove Hansen, Marta Nierychlo, Morten Lykkegaard Christensen, Per Halkjaer Nielsen, Mads Koustrup Jørgensen
Fouling of membranes in membrane bioreactors for wastewater treatment: Planktonic bacteria can have a significant contribution. Water environment research : a research publication of the Water Environment Federation 93 (2) (2020)
Maria Mooshammer, Katharina Kitzinger, Arno Schintlmeister, Soeren Ahmerkamp, Jeppe Lund Nielsen, Per Halkjaer Nielsen, Michael Wagner
Flow-through stable isotope probing (Flow-SIP) minimizes cross-feeding in complex microbial communities. The ISME journal 15 (1) (2020)
Eustace Y Fernando, Simon Jon McIlroy, Marta Nierychlo, Florian-Alexander Herbst, Francesca Petriglieri, Markus C Schmid, Michael Wagner, Jeppe Lund Nielsen, Per Halkjaer Nielsen
Resolving the individual contribution of key microbial populations to enhanced biological phosphorus removal with Raman-FISH. The ISME journal 13 (8) (2019)
Kasper U Kjeldsen, Lars Schreiber, Casper A Thorup, Thomas Boesen, Jesper T Bjerg, Tingting Yang, Morten Simonsen Dueholm, Steffen Larsen, Nils Risgaard-Petersen, Marta Nierychlo, Markus Schmid, Andreas Bøggild, Jack van de Vossenberg, Jeanine S Geelhoed, Filip J R Meysman, Michael Wagner, Per Halkjaer Nielsen, Lars Peter Nielsen, Andreas Schramm
On the evolution and physiology of cable bacteria. Proceedings of the National Academy of Sciences of the United States of America 116 (38) (2019)
Linwei Wu, Daliang Ning, Bing Zhang, Yong Li, Ping Zhang, Xiaoyu Shan, Qiuting Zhang, Mathew Robert Brown, Zhenxin Li, Joy D Van Nostrand, Fangqiong Ling, Naijia Xiao, Ya Zhang, Julia Vierheilig, George F Wells, Yunfeng Yang, Ye Deng, Qichao Tu, Aijie Wang, null null, Tong Zhang, Zhili He, Jurg Keller, Per Halkjaer Nielsen, Pedro J J Alvarez, Craig S Criddle, Michael Wagner, James M Tiedje, Qiang He, Thomas P Curtis, David A Stahl, Lisa Alvarez-Cohen, Bruce E Rittmann, Xianghua Wen, Jizhong Zhou
Global diversity and biogeography of bacterial communities in wastewater treatment plants. Nature microbiology 4 (7) (2019)
Bela Hausmann, Claus Pelikan, Craig W Herbold, Stephan Köstlbacher, Mads Albertsen, Stephanie A Eichorst, Tijana Glavina Del Rio, Martin Huemer, Per Halkjaer Nielsen, Thomas Rattei, Ulrich Stingl, Susannah G Tringe, Daniela Trojan, Cecilia Wentrup, Dagmar Woebken, Michael Pester, Alexander Loy
Peatland Acidobacteria with a dissimilatory sulfur metabolism. The ISME journal 12 (7) (2018)
Søren M Karst, Morten Simonsen Dueholm, Simon Jon McIlroy, Rasmus Hansen Kirkegaard, Per Halkjaer Nielsen, Mads Albertsen
Retrieval of a million high-quality, full-length microbial 16S and 18S rRNA gene sequences without primer bias. Nature biotechnology 36 (2) (2018)
Liping Hao, Simon Jon McIlroy, Rasmus Hansen Kirkegaard, Søren Michael Karst, Warnakulasuriya Eustace Yrosh Fernando, Hüsnü Aslan, Rikke Louise Meyer, Mads Albertsen, Per Halkjaer Nielsen, Morten Simonsen Dueholm
Novel prosthecate bacteria from the candidate phylum Acetothermia. The ISME journal 12 (9) (2018)
Rasmus Hansen Kirkegaard, Simon Jon McIlroy, Jannie M Kristensen, Marta Nierychlo, Søren M Karst, Morten Simonsen Dueholm, Mads Albertsen, Per Halkjaer Nielsen
The impact of immigration on microbial community composition in full-scale anaerobic digesters. Scientific reports 7 (1) (2017)
Sarah L Rouse, William J Hawthorne, Jamie-Lee Berry, Dror S Chorev, Sandra A Ionescu, Sebastian Lambert, Fisentzos Stylianou, Wiebke Ewert, Uma Mackie, R Marc L Morgan, Daniel Erik Otzen, Florian-Alexander Herbst, Per Halkjaer Nielsen, Morten Simonsen Dueholm, Hagan Bayley, Carol V Robinson, Stephen Hare, Stephen J Matthews
A new class of hybrid secretion system is employed in Pseudomonas amyloid biogenesis. Nature communications 8 (1) (2017)
Aaron M Saunders, Mads Albertsen, Jes Vollertsen, Per Halkjaer Nielsen
The activated sludge ecosystem contains a core community of abundant organisms. The ISME journal 10 (1) (2015)
Christian Munck, Mads Albertsen, Amar Telke, Mostafa Ellabaan, Per Halkjaer Nielsen, Morten O A Sommer
Limited dissemination of the wastewater treatment plant core resistome. Nature communications 6 (2015)

Per Halkjaer Nielsen.css-eqlu8i{font-size:small;padding-left:4px;} (P H Nielsen, Per H Nielsen, Per Halkjær Nielsen)

Publication Activity (10 Years)

Top Topics

Top Venues

Per Halkjaer Nielsen (P H Nielsen, Per H Nielsen, Per Halkjær Nielsen)