Marius van den Beek

ORCID

Publication Activity (10 Years)

Years Active: 2018-2024
Publications (10 Years): 15

Top Venues

Institut Curie

Université Pierre et Marie Curie (PHD)

This page only lists publications with an associated author ORCID identifier.

Affiliation History

Institut Curie Oct 01 2016

France

Postdoc :: GENETICS AND DEVELOPMENTAL BIOLOGY

CNRS Délégation Paris B Mar 01 2015 - Aug 31 2016

France

Postdoctoral researcher :: UMR7622

Education History

Université Pierre et Marie Curie Oct 01 2011 - Feb 09 2015

France

PHD :: Developmental Biology

Publications

Delphine Larivière, Linelle Abueg, Nadolina Brajuka, Cristóbal Gallardo-Alba, Bjoern Andreas Gruening, Byung June Ko, Alex Ostrovsky, Marc Palmada-Flores, Brandon D Pickett, Keon Rabbani, Agostinho Antunes, Jennifer R Balacco, Mark J P Chaisson, Haoyu Cheng, Joanna Collins, Melanie Couture, Alexandra A Denisova, Olivier Fedrigo, Guido Roberto Gallo, Alice Maria Giani, Grenville MacDonald Gooder, Kathleen Horan, Nivesh Jain, Cassidy Johnson, Heebal Kim, Chul Lee, Tomas Marques-Bonet, Brian O'Toole, Arang Rhie, Simona Secomandi, Marcella Sozzoni, Tatiana Tilley, Marcela Uliano-Silva, Marius van den Beek, Robert W Williams, Robert M Waterhouse, Adam M Phillippy, Erich D Jarvis, Michael C Schatz, Anton Nekrutenko, Giulio Formenti
Scalable, accessible and reproducible reference genome assembly and evaluation in Galaxy. Nature biotechnology (2024)
Delphine Larivière, Linelle Abueg, Nadolina Brajuka, Cristóbal Gallardo-Alba, Bjoern Andreas Gruening, Byung June Ko, Alex Ostrovsky, Marc Palmada-Flores, Brandon D Pickett, Keon Rabbani, Agostinho Antunes, Jennifer R Balacco, Mark J P Chaisson, Haoyu Cheng, Joanna Collins, Melanie Couture, Alexandra A Denisova, Olivier Fedrigo, Guido Roberto Gallo, Alice Maria Giani, Grenville MacDonald Gooder, Kathleen Horan, Nivesh Jain, Cassidy Johnson, Heebal Kim, Chul Lee, Tomas Marques-Bonet, Brian O'Toole, Arang Rhie, Simona Secomandi, Marcella Sozzoni, Tatiana Tilley, Marcela Uliano-Silva, Marius van den Beek, Robert W Williams, Robert M Waterhouse, Adam M Phillippy, Erich D Jarvis, Michael C Schatz, Anton Nekrutenko, Giulio Formenti
Scalable, accessible and reproducible reference genome assembly and evaluation in Galaxy. Nature biotechnology 42 (3) (2024)
Delphine Larivière, Linelle Abueg, Nadolina Brajuka, Cristóbal Gallardo-Alba, Bjoern Andreas Gruening, Byung June Ko, Alex Ostrovsky, Marc Palmada-Flores, Brandon D Pickett, Keon Rabbani, Agostinho Antunes, Jennifer R Balacco, Mark J P Chaisson, Haoyu Cheng, Joanna Collins, Melanie Couture, Alexandra A Denisova, Olivier Fedrigo, Guido Roberto Gallo, Alice Maria Giani, Grenville MacDonald Gooder, Kathleen Horan, Nivesh Jain, Cassidy Johnson, Heebal Kim, Chul Lee, Tomas Marques-Bonet, Brian O'Toole, Arang Rhie, Simona Secomandi, Marcella Sozzoni, Tatiana Tilley, Marcela Uliano-Silva, Marius van den Beek, Robert W Williams, Robert M Waterhouse, Adam M Phillippy, Erich D Jarvis, Michael C Schatz, Anton Nekrutenko, Giulio Formenti
Scalable, accessible and reproducible reference genome assembly and evaluation in Galaxy. Nature biotechnology (2024)
Delphine Larivière, Linelle Abueg, Nadolina Brajuka, Cristóbal Gallardo-Alba, Bjoern Andreas Gruening, Byung June Ko, Alex Ostrovsky, Marc Palmada-Flores, Brandon D Pickett, Keon Rabbani, Agostinho Antunes, Jennifer R Balacco, Mark J P Chaisson, Haoyu Cheng, Joanna Collins, Melanie Couture, Alexandra A Denisova, Olivier Fedrigo, Guido Roberto Gallo, Alice Maria Giani, Grenville MacDonald Gooder, Kathleen Horan, Nivesh Jain, Cassidy Johnson, Heebal Kim, Chul Lee, Tomas Marques-Bonet, Brian O'Toole, Arang Rhie, Simona Secomandi, Marcella Sozzoni, Tatiana Tilley, Marcela Uliano-Silva, Marius van den Beek, Robert W Williams, Robert M Waterhouse, Adam M Phillippy, Erich D Jarvis, Michael C Schatz, Anton Nekrutenko, Giulio Formenti
Scalable, accessible and reproducible reference genome assembly and evaluation in Galaxy. Nature biotechnology 42 (3) (2024)
Simon Bray, John Chilton, Matthias Bernt, Nicola Soranzo, Marius van den Beek, Bérénice Batut, Helena Rasche, Martin Čech, Peter J A Cock, Björn Grüning, Anton Nekrutenko
The Planemo toolkit for developing, deploying, and executing scientific data analyses in Galaxy and beyond. Genome research 33 (2) (2023)
Simon Bray, John Chilton, Matthias Bernt, Nicola Soranzo, Marius van den Beek, Bérénice Batut, Helena Rasche, Martin Čech, Peter J A Cock, Björn Grüning, Anton Nekrutenko
The Planemo toolkit for developing, deploying, and executing scientific data analyses in Galaxy and beyond. Genome research 33 (2) (2023)
Simon Bray, John Chilton, Matthias Bernt, Nicola Soranzo, Marius van den Beek, Bérénice Batut, Helena Rasche, Martin Čech, Peter J A Cock, Björn Grüning, Anton Nekrutenko
The Planemo toolkit for developing, deploying, and executing scientific data analyses in Galaxy and beyond. Genome research 33 (2) (2023)
Simon Bray, John Chilton, Matthias Bernt, Nicola Soranzo, Marius van den Beek, Bérénice Batut, Helena Rasche, Martin Čech, Peter J A Cock, Björn Grüning, Anton Nekrutenko
The Planemo toolkit for developing, deploying, and executing scientific data analyses in Galaxy and beyond. Genome research (2023)
Simon Bray, John Chilton, Matthias Bernt, Nicola Soranzo, Marius van den Beek, Bérénice Batut, Helena Rasche, Martin Čech, Peter J A Cock, Björn Grüning, Anton Nekrutenko
The Planemo toolkit for developing, deploying, and executing scientific data analyses in Galaxy and beyond. Genome research 33 (2) (2023)
Wolfgang Maier, Simon Bray, Marius van den Beek, Dave Bouvier, Nathaniel Coraor, Milad Miladi, Babita Singh, Jordi Rambla De Argila, Dannon Baker, Nathan Roach, Simon Gladman, Frederik Coppens, Darren P Martin, Andrew Lonie, Bjoern Andreas Gruening, Sergei L Kosakovsky Pond, Anton Nekrutenko
Freely accessible ready to use global infrastructure for SARS-CoV-2 monitoring. bioRxiv : the preprint server for biology (2021)
Katarzyna Siudeja, Marius van den Beek, Nick Riddiford, Benjamin Boumard, Annabelle Wurmser, Marine Stefanutti, Sonia Lameiras, Allison J Bardin
Unraveling the features of somatic transposition in the Drosophila intestine. The EMBO journal 40 (9) (2021)
Nick Riddiford, Katarzyna Siudeja, Marius van den Beek, Benjamin Boumard, Allison J Bardin
Evolution and genomic signatures of spontaneous somatic mutation in Drosophila intestinal stem cells. Genome research 31 (8) (2021)
Wolfgang Maier, Simon A Bray, Marius van den Beek, Dave Bouvier, Nathan Coraor, Milad Miladi, Babita Singh, Jordi Rambla De Argila, Dannon Baker, Nathan Roach, Simon Gladman, Frederik Coppens, Darren P Martin, Andrew Lonie, Björn Grüning, Sergei L Kosakovsky Pond, Anton Nekrutenko
Ready-to-use public infrastructure for global SARS-CoV-2 monitoring. Nature biotechnology 39 (10) (2021)
Dannon Baker, Marius van den Beek, Daniel Blankenberg, Dave Bouvier, John M Chilton, Nate Coraor, Frederik Coppens, Ignacio Eguinoa, Simon Gladman, Bjoern Andreas Gruening, Nicholas Keener, Delphine Larivière, Andrew J Lonie, Sergei L Kosakovsky Pond, Wolfgang Maier, Anton Nekrutenko, James Taylor, Steven Weaver
No more business as usual: Agile and effective responses to emerging pathogen threats require open data and open analytics. PLoS pathogens 16 (8) (2020)
Marius van den Beek, Bruno da Silva, Juliette Pouch, Mohammed El Amine Ali Chaouche, Clément Carré, Christophe Antoniewski
Dual-layer transposon repression in heads of Drosophila melanogaster. RNA (New York, N.Y.) 24 (12) (2018)

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Publication Activity (10 Years)

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Marius van den Beek