Robert M Waterhouse

ResearcherID Loop profile Scopus Author ID ORCID

Publication Activity (10 Years)

Years Active: 2016-2024
Publications (10 Years): 33

Top Venues

F1000Research

Nature biotechnology

Nature communications

Proceedings of the National Academy of Sciences of the United States of America

University of Lausanne

Imperial College London (PHD)

This page only lists publications with an associated author ORCID identifier.

Affiliation History

University of Lausanne Mar 01 2017

Switzerland

Professeur Boursier FNS :: Department of Ecology and Evolution

University of Geneva Jan 01 2016 - Feb 28 2017

Switzerland

Maître assistant :: Department of Genetic Medicine and Development

University of Geneva Jan 01 2015 - Dec 31 2015

Switzerland

Marie Curie Returning Fellow :: Department of Genetic Medicine and Development

Massachusetts Institute of Technology Jan 01 2013 - Dec 31 2014

United States

Marie Curie International Outgoing Fellow :: Computer Science and Artificial Intelligence Laboratory

University of Geneva May 01 2009 - Dec 31 2012

Switzerland

Swiss National Science Foundation Postdoctoral Researcher :: Department of Genetic Medicine and Development

Education History

Imperial College London Oct 03 2005 - Mar 31 2009

United Kingdom

PHD :: Faculty of Life Sciences

Publications

Delphine Larivière, Linelle Abueg, Nadolina Brajuka, Cristóbal Gallardo-Alba, Bjoern Andreas Gruening, Byung June Ko, Alex Ostrovsky, Marc Palmada-Flores, Brandon D Pickett, Keon Rabbani, Agostinho Antunes, Jennifer R Balacco, Mark J P Chaisson, Haoyu Cheng, Joanna Collins, Melanie Couture, Alexandra A Denisova, Olivier Fedrigo, Guido Roberto Gallo, Alice Maria Giani, Grenville MacDonald Gooder, Kathleen Horan, Nivesh Jain, Cassidy Johnson, Heebal Kim, Chul Lee, Tomas Marques-Bonet, Brian O'Toole, Arang Rhie, Simona Secomandi, Marcella Sozzoni, Tatiana Tilley, Marcela Uliano-Silva, Marius van den Beek, Robert W Williams, Robert M Waterhouse, Adam M Phillippy, Erich D Jarvis, Michael C Schatz, Anton Nekrutenko, Giulio Formenti
Scalable, accessible and reproducible reference genome assembly and evaluation in Galaxy. Nature biotechnology (2024)
Robert M Waterhouse, Anne-Françoise Adam-Blondon, Bachir Balech, Endre Barta, Physilia Ying Shi Chua, Valeria Di Cola, Katharina F Heil, Graham M Hughes, Lars S Jermiin, Matúš Kalaš, Jerry Lanfear, Evangelos Pafilis, Patricia M Palagi, Aristotelis C Papageorgiou, Joana Paupério, Fotis E Psomopoulos, Niels Raes, Josephine Burgin, Toni Gabaldon
The ELIXIR Biodiversity Community: Understanding short- and long-term changes in biodiversity. F1000Research 12 (2024)
Delphine Larivière, Linelle Abueg, Nadolina Brajuka, Cristóbal Gallardo-Alba, Bjoern Andreas Gruening, Byung June Ko, Alex Ostrovsky, Marc Palmada-Flores, Brandon D Pickett, Keon Rabbani, Agostinho Antunes, Jennifer R Balacco, Mark J P Chaisson, Haoyu Cheng, Joanna Collins, Melanie Couture, Alexandra A Denisova, Olivier Fedrigo, Guido Roberto Gallo, Alice Maria Giani, Grenville MacDonald Gooder, Kathleen Horan, Nivesh Jain, Cassidy Johnson, Heebal Kim, Chul Lee, Tomas Marques-Bonet, Brian O'Toole, Arang Rhie, Simona Secomandi, Marcella Sozzoni, Tatiana Tilley, Marcela Uliano-Silva, Marius van den Beek, Robert W Williams, Robert M Waterhouse, Adam M Phillippy, Erich D Jarvis, Michael C Schatz, Anton Nekrutenko, Giulio Formenti
Scalable, accessible and reproducible reference genome assembly and evaluation in Galaxy. Nature biotechnology 42 (3) (2024)
Antonin Thiébaut, Adrian M Altenhoff, Giulia Campli, Natasha M Glover, Christophe Dessimoz, Robert M Waterhouse
DrosOMA: the Drosophila Orthologous Matrix browser. F1000Research 12 (2024)
Giulia Campli, Olga Volovych, Kenneth Kim, Werner P Veldsman, Harriet B Drage, Idan Sheizaf, Sinéad Lynch, Ariel D Chipman, Allison C Daley, Marc Robinson-Rechavi, Robert M Waterhouse
The moulting arthropod: a complete genetic toolkit review. Biological reviews of the Cambridge Philosophical Society (2024)
Robert M Waterhouse, Anne-Françoise Adam-Blondon, Bachir Balech, Endre Barta, Physilia Ying Shi Chua, Valeria Di Cola, Katharina F Heil, Graham M Hughes, Lars S Jermiin, Matúš Kalaš, Jerry Lanfear, Evangelos Pafilis, Patricia M Palagi, Aristotelis C Papageorgiou, Joana Paupério, Fotis E Psomopoulos, Niels Raes, Josephine Burgin, Toni Gabaldon
The ELIXIR Biodiversity Community: Understanding short- and long-term changes in biodiversity. F1000Research 12 (2024)
Delphine Larivière, Linelle Abueg, Nadolina Brajuka, Cristóbal Gallardo-Alba, Bjoern Andreas Gruening, Byung June Ko, Alex Ostrovsky, Marc Palmada-Flores, Brandon D Pickett, Keon Rabbani, Agostinho Antunes, Jennifer R Balacco, Mark J P Chaisson, Haoyu Cheng, Joanna Collins, Melanie Couture, Alexandra A Denisova, Olivier Fedrigo, Guido Roberto Gallo, Alice Maria Giani, Grenville MacDonald Gooder, Kathleen Horan, Nivesh Jain, Cassidy Johnson, Heebal Kim, Chul Lee, Tomas Marques-Bonet, Brian O'Toole, Arang Rhie, Simona Secomandi, Marcella Sozzoni, Tatiana Tilley, Marcela Uliano-Silva, Marius van den Beek, Robert W Williams, Robert M Waterhouse, Adam M Phillippy, Erich D Jarvis, Michael C Schatz, Anton Nekrutenko, Giulio Formenti
Scalable, accessible and reproducible reference genome assembly and evaluation in Galaxy. Nature biotechnology (2024)
Antonin Thiébaut, Adrian M Altenhoff, Giulia Campli, Natasha M Glover, Christophe Dessimoz, Robert M Waterhouse
DrosOMA: the Drosophila Orthologous Matrix browser. F1000Research 12 (2024)
Robert M Waterhouse, Anne-Françoise Adam-Blondon, Bachir Balech, Endre Barta, Physilia Ying Shi Chua, Valeria Di Cola, Katharina F Heil, Graham M Hughes, Lars S Jermiin, Matúš Kalaš, Jerry Lanfear, Evangelos Pafilis, Patricia M Palagi, Aristotelis C Papageorgiou, Joana Paupério, Fotis E Psomopoulos, Niels Raes, Josephine Burgin, Toni Gabaldon
The ELIXIR Biodiversity Community: Understanding short- and long-term changes in biodiversity. F1000Research 12 (2024)
Delphine Larivière, Linelle Abueg, Nadolina Brajuka, Cristóbal Gallardo-Alba, Bjoern Andreas Gruening, Byung June Ko, Alex Ostrovsky, Marc Palmada-Flores, Brandon D Pickett, Keon Rabbani, Agostinho Antunes, Jennifer R Balacco, Mark J P Chaisson, Haoyu Cheng, Joanna Collins, Melanie Couture, Alexandra A Denisova, Olivier Fedrigo, Guido Roberto Gallo, Alice Maria Giani, Grenville MacDonald Gooder, Kathleen Horan, Nivesh Jain, Cassidy Johnson, Heebal Kim, Chul Lee, Tomas Marques-Bonet, Brian O'Toole, Arang Rhie, Simona Secomandi, Marcella Sozzoni, Tatiana Tilley, Marcela Uliano-Silva, Marius van den Beek, Robert W Williams, Robert M Waterhouse, Adam M Phillippy, Erich D Jarvis, Michael C Schatz, Anton Nekrutenko, Giulio Formenti
Scalable, accessible and reproducible reference genome assembly and evaluation in Galaxy. Nature biotechnology 42 (3) (2024)
Antonin Thiébaut, Adrian M Altenhoff, Giulia Campli, Natasha M Glover, Christophe Dessimoz, Robert M Waterhouse
DrosOMA: the Drosophila Orthologous Matrix browser. F1000Research 12 (2024)
Camila J Mazzoni, Claudio Ciofi, Robert M Waterhouse
Biodiversity: an atlas of European reference genomes. Nature 619 (7969) (2023)
Delphine Larivière, Linelle Abueg, Nadolina Brajuka, Cristóbal Gallardo-Alba, Bjoern Andreas Gruening, Byung June Ko, Alexander Ostrovsky, Marc Palmada-Flores, Brandon D Pickett, Keon Rabbani, Jennifer R Balacco, Mark J P Chaisson, Haoyu Cheng, Joanna Collins, Alexandra Denisova, Olivier Fedrigo, Guido Roberto Gallo, Alice Maria Giani, Grenville MacDonald Gooder, Nivesh Jain, Cassidy Johnson, Heebal Kim, Chul Lee, Tomas Marques-Bonet, Brian O'Toole, Arang Rhie, Simona Secomandi, Marcella Sozzoni, Tatiana Tilley, Marcela Uliano-Silva, Marius van den Beek, Robert M Waterhouse, Adam M Phillippy, Erich D Jarvis, Michael C Schatz, Anton Nekrutenko, Giulio Formenti
Scalable, accessible, and reproducible reference genome assembly and evaluation in Galaxy. bioRxiv : the preprint server for biology (2023)
Maarten J M F Reijnders, Robert M Waterhouse
CrowdGO: Machine learning and semantic similarity guided consensus Gene Ontology annotation. PLoS computational biology 18 (5) (2022)
Romain Feron, Robert M Waterhouse
Assessing species coverage and assembly quality of rapidly accumulating sequenced genomes. GigaScience 11 (2022)
Varvara Lukyanchikova, Miroslav Nuriddinov, Polina Belokopytova, Alena Taskina, Jiangtao Liang, Maarten J M F Reijnders, Livio Ruzzante, Romain Feron, Robert M Waterhouse, Yang Wu, Chunhong Mao, Zhijian Tu, Igor V Sharakhov, Veniamin S Fishman
Anopheles mosquitoes reveal new principles of 3D genome organization in insects. Nature communications 13 (1) (2022)
Bret M Boyd, Nam-Phuong Nguyen, Julie M Allen, Robert M Waterhouse, Kyle B Vo, Andrew D Sweet, Dale H Clayton, Sarah E Bush, Michael D Shapiro, Kevin P Johnson
Long-distance dispersal of pigeons and doves generated new ecological opportunities for host-switching and adaptive radiation by their parasites. Proceedings. Biological sciences 289 (1970) (2022)
Daniella A Lefteri, Steven R Bryden, Marieke Pingen, Sandra Terry, Ailish McCafferty, Emily F Beswick, Georgi Georgiev, Marleen Van der Laan, Valeria Mastrullo, Paola Campagnolo, Robert M Waterhouse, Margus Varjak, Andres Merits, Rennos Fragkoudis, Stephen D Griffin, Kave Shams, Emilie Pondeville, Clive S McKimmie
Mosquito saliva enhances virus infection through sialokinin-dependent vascular leakage. Proceedings of the National Academy of Sciences of the United States of America 119 (24) (2022)
Giulia Zancolli, Maarten Reijnders, Robert M Waterhouse, Marc Robinson-Rechavi
Convergent evolution of venom gland transcriptomes across Metazoa. Proceedings of the National Academy of Sciences of the United States of America 119 (1) (2022)
Romain Feron, Qiaowei Pan, Ming Wen, Boudjema Imarazene, Elodie Jouanno, Jennifer L Anderson, Amaury Herpin, Laurent Journot, Hugues Parrinello, Christophe Klopp, Verena A Kottler, Alvaro S Roco, Kang Du, Susanne Kneitz, Mateus Adolfi, Catherine A Wilson, Braedan McCluskey, Angel Amores, Thomas Desvignes, Frederick W Goetz, Ato Takanashi, Mari Kawaguchi, Harry William Detrich, Marcos Antônio de Oliveira, Rafael Henrique Nóbrega, Takashi Sakamoto, Masatoshi Nakamoto, Anna Wargelius, Ørjan Karlsen, Zhongwei Wang, Matthias Stöck, Robert M Waterhouse, Ingo Braasch, John H Postlethwait, Manfred Schartl, Yann Guiguen
RADSex: A computational workflow to study sex determination using restriction site-associated DNA sequencing data. Molecular ecology resources 21 (5) (2021)
Alexey I Makunin, Petra Korlević, Naomi Park, Scott Goodwin, Robert M Waterhouse, Katharina von Wyschetzki, Christopher G Jacob, Robert Davies, Dominic P Kwiatkowski, Brandyce St Laurent, Diego Ayala, Mara N K Lawniczak
A targeted amplicon sequencing panel to simultaneously identify mosquito species and Plasmodium presence across the entire Anopheles genus. Molecular ecology resources (2021)
Zannatul Ferdous, Silke Fuchs, Volker Behrends, Nikolaos Trasanidis, Robert M Waterhouse, Dina Vlachou, George K Christophides
Anopheles coluzzii stearoyl-CoA desaturase is essential for adult female survival and reproduction upon blood feeding. PLoS pathogens 17 (5) (2021)
Karen M Kapheim, Beryl M Jones, Eirik Søvik, Eckart Stolle, Robert M Waterhouse, Guy Bloch, Yehuda Ben-Shahar
Brain microRNAs among social and solitary bees. Royal Society open science 7 (7) (2020)
Robert M Waterhouse, Sergey Aganezov, Yoann Anselmetti, Jiyoung Lee, Livio Ruzzante, Maarten J M F Reijnders, Romain Feron, Sèverine Bérard, Phillip George, Matthew W Hahn, Paul I Howell, Maryam Kamali, Sergey Koren, Daniel Lawson, Gareth Maslen, Ashley Peery, Adam M Phillippy, Maria V Sharakhova, Eric Tannier, Maria F Unger, Simo V Zhang, Max A Alekseyev, Nora J Besansky, Cedric Chauve, Scott J Emrich, Igor V Sharakhov
Evolutionary superscaffolding and chromosome anchoring to improve Anopheles genome assemblies. BMC biology 18 (1) (2020)
Karen M Kapheim, Hailin Pan, Cai Li, Charles Blatti, Brock A Harpur, Panagiotis Ioannidis, Beryl M Jones, Clement F Kent, Livio Ruzzante, Laura Sloofman, Eckart Stolle, Robert M Waterhouse, Amro Zayed, Guo-Jie Zhang, William T Wcislo
Draft Genome Assembly and Population Genetics of an Agricultural Pollinator, the Solitary Alkali Bee (Halictidae: Nomia melanderi). G3 (Bethesda, Md.) 9 (3) (2019)
Mathieu Seppey, Panagiotis Ioannidis, Brent C Emerson, Camille Pitteloud, Marc Robinson-Rechavi, Julien Roux, Hermes E Escalona, Duane D McKenna, Bernhard Misof, Seunggwan Shin, Xin Zhou, Robert M Waterhouse, Nadir Alvarez
Genomic signatures accompanying the dietary shift to phytophagy in polyphagan beetles. Genome biology 20 (1) (2019)
Jonathan M Mudge, Irwin Jungreis, Toby Hunt, Jose Manuel Gonzalez, James C Wright, Mike Kay, Claire Davidson, Stephen Fitzgerald, Ruth Seal, Susan Tweedie, Liang He, Robert M Waterhouse, Yue Li, Elspeth Bruford, Jyoti S Choudhary, Adam Frankish, Manolis Kellis
Discovery of high-confidence human protein-coding genes and exons by whole-genome PhyloCSF helps elucidate 118 GWAS loci. Genome research 29 (12) (2019)
Kristen A Panfilio, Iris M Vargas Jentzsch, Joshua B Benoit, Deniz Erezyilmaz, Yuichiro Suzuki, Stefano Colella, Hugh M Robertson, Monica F Poelchau, Robert M Waterhouse, Panagiotis Ioannidis, Matthew T Weirauch, Daniel S T Hughes, Shwetha C Murali, John H Werren, Chris G C Jacobs, Elizabeth J Duncan, David Armisén, Barbara M I Vreede, Patrice Baa-Puyoulet, Chloé S Berger, Chun-Che Chang, Hsu Chao, Mei-Ju M Chen, Yen Ta Chen, Christopher P Childers, Ariel D Chipman, Andrew G Cridge, Antonin Jean Johan Crumière, Peter K Dearden, Elise M Didion, Huyen Dinh, Harsha Vardhan Doddapaneni, Amanda Dolan, Shannon Dugan, Cassandra G Extavour, Gérard Febvay, Markus Friedrich, Neta Ginzburg, Yi Han, Peter Heger, Christopher J Holmes, Thorsten Horn, Yi-Min Hsiao, Emily C Jennings, Johnston J Spencer, Tamsin E M Jones, Jeffery W Jones, Abderrahman Khila, Stefan Koelzer, Viera Kováčová, Megan Leask, Sandra L Lee, Chien-Yueh Lee, Mackenzie R Lovegrove, Hsiao-Ling Lu, Yong Lu, Patricia J Moore, Monica C Munoz-Torres, Donna M Muzny, Subba Reddy Palli, Nicolas Parisot, Leslie Pick, Megan L Porter, Jiaxin Qu, Peter N Refki, Rose Richter, Rolando Rivera-Pomar, Andrew J Rosendale, Siegfried Roth, Lena Sachs, M Emília Santos, Jan Seibert, Essia Sghaier, Jayendra Nath Shukla, Richard J Stancliffe, Olivia Tidswell, Lucila Traverso, Maurijn van der Zee, Séverine Viala, Kim Carlyle Worley, Evgeny M Zdobnov, Richard A Gibbs, Stephen Richards
Molecular evolutionary trends and feeding ecology diversification in the Hemiptera, anchored by the milkweed bug genome. Genome biology 20 (1) (2019)
Kevin P Johnson, Christopher H Dietrich, Frank Friedrich, Rolf G Beutel, Benjamin Wipfler, Ralph S Peters, Julie M Allen, Malte Petersen, Alexander Donath, Kimberly K O Walden, Alexey M Kozlov, Lars Podsiadlowski, Christoph Mayer, Karen Meusemann, Alexandros Vasilikopoulos, Robert M Waterhouse, Stephen L Cameron, Christiane Weirauch, Daniel R Swanson, Diana M Percy, Nate B Hardy, Irene Terry, Shanlin Liu, Xin Zhou, Bernhard Misof, Hugh M Robertson, Kazunori Yoshizawa
Phylogenomics and the evolution of hemipteroid insects. Proceedings of the National Academy of Sciences of the United States of America 115 (50) (2018)
Francesco Papa, Nikolai Windbichler, Robert M Waterhouse, Alessia Cagnetti, Rocco D'Amato, Tania Persampieri, Mara N K Lawniczak, Tony Nolan, Philippos Aris Papathanos
Rapid evolution of female-biased genes among four species of Anopheles malaria mosquitoes. Genome research 27 (9) (2017)
Evgeny M Zdobnov, Fredrik Tegenfeldt, Dmitry Kuznetsov, Robert M Waterhouse, Felipe A Simão, Panagiotis Ioannidis, Mathieu Seppey, Alexis Loetscher, Evgenia V Kriventseva
OrthoDB v9.1: cataloging evolutionary and functional annotations for animal, fungal, plant, archaeal, bacterial and viral orthologs. Nucleic acids research 45 (D1) (2016)
Monika Gulia-Nuss, Andrew B Nuss, Jason M Meyer, Daniel E Sonenshine, R Michael Roe, Robert M Waterhouse, David B Sattelle, José de la Fuente, Jose M Ribeiro, Karine Megy, Jyothi Thimmapuram, Jason R Miller, Brian P Walenz, Sergey Koren, Jessica B Hostetler, Mathangi Thiagarajan, Vinita S Joardar, Linda I Hannick, Shelby Bidwell, Martin P Hammond, Sarah Young, Qiandong Zeng, Jenica L Abrudan, Francisca C Almeida, Nieves Ayllón, Ketaki Bhide, Brooke W Bissinger, Elena Bonzon-Kulichenko, Steven D Buckingham, Daniel R Caffrey, Melissa J Caimano, Vincent Croset, Timothy Driscoll, Donald G Gilbert, Joseph J Gillespie, Gloria I Giraldo-Calderón, Jeffrey M Grabowski, David Jiang, Sayed M S Khalil, Donghun Kim, Katherine M Kocan, Juraj Koči, Richard J Kuhn, Timothy J Kurtti, Kristin Lees, Emma G Lang, Ryan C Kennedy, Hyeogsun Kwon, Rushika Perera, Yumin Qi, Justin D Radolf, Joyce M Sakamoto, Alejandro Sánchez-Gracia, Maiara S Severo, Neal Silverman, Ladislav Šimo, Marta Tojo, Cristian Tornador, Janice P Van Zee, Jesús Vázquez, Filipe G Vieira, Margarita Villar, Adam R Wespiser, Yunlong Yang, Jiwei Zhu, Peter Arensburger, Patricia V Pietrantonio, Stephen C Barker, Renfu Shao, Evgeny M Zdobnov, Frank Hauser, Cornelis J P Grimmelikhuijzen, Yoonseong Park, Julio Rozas, Richard Benton, Joao H F Pedra, David R Nelson, Maria F Unger, Jose M C Tubio, Zhijian Tu, Hugh M Robertson, Martin Shumway, Granger Sutton, Jennifer R Wortman, Daniel Lawson, Stephen K Wikel, Vishvanath M Nene, Claire M Fraser, Frank H Collins, Bruce Birren, Karen E Nelson, Elisabet Caler, Catherine A Hill
Genomic insights into the Ixodes scapularis tick vector of Lyme disease. Nature communications 7 (2016)
Joshua B Benoit, Zach N Adelman, Klaus Reinhardt, Amanda Dolan, Monica Poelchau, Emily C Jennings, Elise M Szuter, Richard W Hagan, Hemant Gujar, Jayendra Nath Shukla, Fang Zhu, M Mohan, David R Nelson, Andrew J Rosendale, Christian Derst, Valentina Resnik, Sebastian Wernig, Pamela Menegazzi, Christian Wegener, Nicolai Peschel, Jacob M Hendershot, Wolfgang Blenau, Reinhard Predel, Paul R Johnston, Panagiotis Ioannidis, Robert M Waterhouse, Ralf Nauen, Corinna Schorn, Mark-Christoph Ott, Frank Maiwald, J Spencer Johnston, Ameya D Gondhalekar, Michael E Scharf, Brittany F Peterson, Kapil R Raje, Benjamin A Hottel, David Armisén, Antonin Jean Johan Crumière, Peter Nagui Refki, Maria Emilia Santos, Essia Sghaier, Sèverine Viala, Abderrahman Khila, Seung-Joon Ahn, Christopher P Childers, Chien-Yueh Lee, Han Lin, Daniel S T Hughes, Elizabeth J Duncan, Shwetha C Murali, Jiaxin Qu, Shannon Dugan, Sandra L Lee, Hsu Chao, Huyen Dinh, Yi Han, Harshavardhan Doddapaneni, Kim C Worley, Donna M Muzny, David Wheeler, Kristen A Panfilio, Iris M Vargas Jentzsch, Edward L Vargo, Warren Booth, Markus Friedrich, Matthew T Weirauch, Michelle A E Anderson, Jeffery W Jones, Omprakash Mittapalli, Chaoyang Zhao, Jing-Jiang Zhou, Jay D Evans, Geoffrey M Attardo, Hugh M Robertson, Evgeny M Zdobnov, Jose M C Ribeiro, Richard A Gibbs, John H Werren, Subba R Palli, Coby Schal, Stephen Richards
Unique features of a global human ectoparasite identified through sequencing of the bed bug genome. Nature communications 7 (2016)

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Publication Activity (10 Years)

Top Topics

Top Venues

Robert M Waterhouse