Heebal Kim

ORCID

Publication Activity (10 Years)

Years Active: 2017-2024
Publications (10 Years): 48

Top Venues

Seoul National University

University of Delaware (MSC)

This page only lists publications with an associated author ORCID identifier.

Affiliation History

Seoul National University

South Korea

Professor :: College of Agriculture and Life Sciences

Seoul National University

South Korea

Operation committee member :: Natural Sciences

Seoul National University

South Korea

Associate professor :: College of Agriculture and Life Sciences

Seoul National University

South Korea

Assistant professor :: College of Agriculture and Life Sciences

National Institute of Animal Science

South Korea

Agriculture researcher :: Animal Genetics

Animal Genomics and Breeding Center, BioGreen 21 Program, Rural Development Administration

South Korea

Chair :: Animal Genomics and Breeding

Seoul National University

South Korea

Full-time lecturer :: College of Agriculture and Life Sciences

Rockefeller University

United States

Post Doc :: Statistical Genetics

National Institute of Animal Science

South Korea

Researcher :: Molecular Genetics

Education History

University of Delaware

United States

MSC :: Computer and Information Science

University of Delaware

United States

PHD :: Animal Genomics

Seoul National University

South Korea

MSC :: Animal Science

Seoul National University

South Korea

BSC :: Animal Science

Publications

Delphine Larivière, Linelle Abueg, Nadolina Brajuka, Cristóbal Gallardo-Alba, Bjoern Andreas Gruening, Byung June Ko, Alex Ostrovsky, Marc Palmada-Flores, Brandon D Pickett, Keon Rabbani, Agostinho Antunes, Jennifer R Balacco, Mark J P Chaisson, Haoyu Cheng, Joanna Collins, Melanie Couture, Alexandra A Denisova, Olivier Fedrigo, Guido Roberto Gallo, Alice Maria Giani, Grenville MacDonald Gooder, Kathleen Horan, Nivesh Jain, Cassidy Johnson, Heebal Kim, Chul Lee, Tomas Marques-Bonet, Brian O'Toole, Arang Rhie, Simona Secomandi, Marcella Sozzoni, Tatiana Tilley, Marcela Uliano-Silva, Marius van den Beek, Robert W Williams, Robert M Waterhouse, Adam M Phillippy, Erich D Jarvis, Michael C Schatz, Anton Nekrutenko, Giulio Formenti
Scalable, accessible and reproducible reference genome assembly and evaluation in Galaxy. Nature biotechnology (2024)
Bongsang Kim, So Yun Jhang, Bomin Koh, Soonok Kim, Won-Jae Chi, Jeong-Mi Park, Chae Eun Lim, Yoonjee Hong, Heebal Kim, Jaewoong Yu, Seoae Cho
Chromosome-level genome assembly of Korean holoparasitic plants, Orobanche coerulescens. Scientific data 11 (1) (2024)
Delphine Larivière, Linelle Abueg, Nadolina Brajuka, Cristóbal Gallardo-Alba, Bjoern Andreas Gruening, Byung June Ko, Alex Ostrovsky, Marc Palmada-Flores, Brandon D Pickett, Keon Rabbani, Agostinho Antunes, Jennifer R Balacco, Mark J P Chaisson, Haoyu Cheng, Joanna Collins, Melanie Couture, Alexandra A Denisova, Olivier Fedrigo, Guido Roberto Gallo, Alice Maria Giani, Grenville MacDonald Gooder, Kathleen Horan, Nivesh Jain, Cassidy Johnson, Heebal Kim, Chul Lee, Tomas Marques-Bonet, Brian O'Toole, Arang Rhie, Simona Secomandi, Marcella Sozzoni, Tatiana Tilley, Marcela Uliano-Silva, Marius van den Beek, Robert W Williams, Robert M Waterhouse, Adam M Phillippy, Erich D Jarvis, Michael C Schatz, Anton Nekrutenko, Giulio Formenti
Scalable, accessible and reproducible reference genome assembly and evaluation in Galaxy. Nature biotechnology 42 (3) (2024)
Sohyoung Won, Jaewoong Yu, Heebal Kim
Identifying genes within pathways in unannotated genomes with PaGeSearch. Genome research (2024)
Bongsang Kim, So Yun Jhang, Bomin Koh, Soonok Kim, Won-Jae Chi, Jeong-Mi Park, Chae Eun Lim, Yoonjee Hong, Heebal Kim, Jaewoong Yu, Seoae Cho
Chromosome-level genome assembly of Korean holoparasitic plants, Orobanche coerulescens. Scientific data 11 (1) (2024)
Truc Ly Nguyen, Heebal Kim
Immunoinformatics and computational approaches driven designing a novel vaccine candidate against Powassan virus. Scientific reports 14 (1) (2024)
Truc Ly Nguyen, Heebal Kim
Immunoinformatics and computational approaches driven designing a novel vaccine candidate against Powassan virus. Scientific reports 14 (1) (2024)
Sohyoung Won, Jaewoong Yu, Heebal Kim
Identifying genes within pathways in unannotated genomes with PaGeSearch. Genome research 34 (5) (2024)
Truc Ly Nguyen, Heebal Kim
Immunoinformatics and computational approaches driven designing a novel vaccine candidate against Powassan virus. Scientific reports 14 (1) (2024)
Bongsang Kim, So Yun Jhang, Bomin Koh, Soonok Kim, Won-Jae Chi, Jeong-Mi Park, Chae Eun Lim, Yoonjee Hong, Heebal Kim, Jaewoong Yu, Seoae Cho
Chromosome-level genome assembly of Korean holoparasitic plants, Orobanche coerulescens. Scientific data 11 (1) (2024)
Sohyoung Won, Jaewoong Yu, Heebal Kim
Identifying genes within pathways in unannotated genomes with PaGeSearch. Genome research 34 (5) (2024)
Delphine Larivière, Linelle Abueg, Nadolina Brajuka, Cristóbal Gallardo-Alba, Bjoern Andreas Gruening, Byung June Ko, Alex Ostrovsky, Marc Palmada-Flores, Brandon D Pickett, Keon Rabbani, Agostinho Antunes, Jennifer R Balacco, Mark J P Chaisson, Haoyu Cheng, Joanna Collins, Melanie Couture, Alexandra A Denisova, Olivier Fedrigo, Guido Roberto Gallo, Alice Maria Giani, Grenville MacDonald Gooder, Kathleen Horan, Nivesh Jain, Cassidy Johnson, Heebal Kim, Chul Lee, Tomas Marques-Bonet, Brian O'Toole, Arang Rhie, Simona Secomandi, Marcella Sozzoni, Tatiana Tilley, Marcela Uliano-Silva, Marius van den Beek, Robert W Williams, Robert M Waterhouse, Adam M Phillippy, Erich D Jarvis, Michael C Schatz, Anton Nekrutenko, Giulio Formenti
Scalable, accessible and reproducible reference genome assembly and evaluation in Galaxy. Nature biotechnology (2024)
Truc Ly Nguyen, Heebal Kim
Immunoinformatics and computational approaches driven designing a novel vaccine candidate against Powassan virus. Scientific reports 14 (1) (2024)
Sohyoung Won, Jaewoong Yu, Heebal Kim
Identifying genes within pathways in unannotated genomes with PaGeSearch. Genome research 34 (5) (2024)
Delphine Larivière, Linelle Abueg, Nadolina Brajuka, Cristóbal Gallardo-Alba, Bjoern Andreas Gruening, Byung June Ko, Alex Ostrovsky, Marc Palmada-Flores, Brandon D Pickett, Keon Rabbani, Agostinho Antunes, Jennifer R Balacco, Mark J P Chaisson, Haoyu Cheng, Joanna Collins, Melanie Couture, Alexandra A Denisova, Olivier Fedrigo, Guido Roberto Gallo, Alice Maria Giani, Grenville MacDonald Gooder, Kathleen Horan, Nivesh Jain, Cassidy Johnson, Heebal Kim, Chul Lee, Tomas Marques-Bonet, Brian O'Toole, Arang Rhie, Simona Secomandi, Marcella Sozzoni, Tatiana Tilley, Marcela Uliano-Silva, Marius van den Beek, Robert W Williams, Robert M Waterhouse, Adam M Phillippy, Erich D Jarvis, Michael C Schatz, Anton Nekrutenko, Giulio Formenti
Scalable, accessible and reproducible reference genome assembly and evaluation in Galaxy. Nature biotechnology 42 (3) (2024)
Sohyoung Won, Jaewoong Yu, Heebal Kim
Identifying genes within pathways in unannotated genomes with PaGeSearch. Genome research 34 (5) (2024)
Bongsang Kim, Yujung Lee, Bomin Koh, So Yun Jhang, Chul Hee Lee, Soonok Kim, Won-Jae Chi, Seoae Cho, Heebal Kim, Jaewoong Yu
Distinctive origin and evolution of endemic thistle of Korean volcanic island: Structural organization and phylogenetic relationships with complete chloroplast genome. PloS one 18 (3) (2023)
Jaehoon Jung, So Yun Jhang, Bongsang Kim, Bomin Koh, Chaeyoung Ban, Hyojung Seo, Taeseo Park, Won-Jae Chi, Soonok Kim, Heebal Kim, Jaewoong Yu
The first high-quality genome assembly and annotation of Patiria pectinifera. Scientific data 10 (1) (2023)
Vladimir Li, Chul Lee, Youngho Lee, Heebal Kim
Molecular dynamics simulation of pyruvate kinase to investigate improved thermostability of artificially selected strain in Enterococcus faecium. Genes & genomics (2023)
Bongsang Kim, Yujung Lee, Bomin Koh, So Yun Jhang, Chul Hee Lee, Soonok Kim, Won-Jae Chi, Seoae Cho, Heebal Kim, Jaewoong Yu
Distinctive origin and evolution of endemic thistle of Korean volcanic island: Structural organization and phylogenetic relationships with complete chloroplast genome. PloS one 18 (3) (2023)
Young Ho Lee, Linelle Abueg, Jin-Koo Kim, Young Wook Kim, Olivier Fedrigo, Jennifer Balacco, Giulio Formenti, Kerstin Howe, Alan Tracey, Jonathan M D Wood, Françoise Thibaud-Nissen, Bo Hye Nam, Eun Soo No, Hye Ran Kim, Chul Lee, Erich D Jarvis, Heebal Kim
Chromosome-level genome assembly of chub mackerel (Scomber japonicus) from the Indo-Pacific Ocean. Scientific data 10 (1) (2023)
Jisung Jang, Jaehoon Jung, Young Ho Lee, Sanghyun Lee, Myunggi Baik, Heebal Kim
Chromosome-level genome assembly of Korean native cattle and pangenome graph of 14 Bos taurus assemblies. Scientific data 10 (1) (2023)
Vladimir Li, Youngho Lee, Chul Lee, Heebal Kim
Repurposing existing drugs for monkeypox: applications of virtual screening methods. Genes & genomics (2023)
Delphine Larivière, Linelle Abueg, Nadolina Brajuka, Cristóbal Gallardo-Alba, Bjoern Andreas Gruening, Byung June Ko, Alexander Ostrovsky, Marc Palmada-Flores, Brandon D Pickett, Keon Rabbani, Jennifer R Balacco, Mark J P Chaisson, Haoyu Cheng, Joanna Collins, Alexandra Denisova, Olivier Fedrigo, Guido Roberto Gallo, Alice Maria Giani, Grenville MacDonald Gooder, Nivesh Jain, Cassidy Johnson, Heebal Kim, Chul Lee, Tomas Marques-Bonet, Brian O'Toole, Arang Rhie, Simona Secomandi, Marcella Sozzoni, Tatiana Tilley, Marcela Uliano-Silva, Marius van den Beek, Robert M Waterhouse, Adam M Phillippy, Erich D Jarvis, Michael C Schatz, Anton Nekrutenko, Giulio Formenti
Scalable, accessible, and reproducible reference genome assembly and evaluation in Galaxy. bioRxiv : the preprint server for biology (2023)
Kwondo Kim, Donghee Kim, Olivier Hanotte, Charles Lee, Heebal Kim, Choongwon Jeong
Inference of admixture origins in indigenous African cattle. Molecular biology and evolution (2023)
Bongsang Kim, Yujung Lee, Bomin Koh, So Yun Jhang, Chul Hee Lee, Soonok Kim, Won-Jae Chi, Seoae Cho, Heebal Kim, Jaewoong Yu
Distinctive origin and evolution of endemic thistle of Korean volcanic island: Structural organization and phylogenetic relationships with complete chloroplast genome. PloS one 18 (3) (2023)
Soomin Jeon, Hyaekang Kim, Jina Kim, Donghyeok Seol, Jinchul Jo, Youngseok Choi, Seoae Cho, Heebal Kim
Positive Effect of Lactobacillus acidophilus EG004 on Cognitive Ability of Healthy Mice by Fecal Microbiome Analysis Using Full-Length 16S-23S rRNA Metagenome Sequencing. Microbiology spectrum 10 (1) (2022)
Truc Ly Nguyen, Jorge Samuel Leon Magdaleno, Abdul Rajjak Shaikh, Kiattawee Choowongkomon, Vladimir Li, Youngho Lee, Heebal Kim
Designing a multi-epitope candidate vaccine by employing immunoinformatics approaches to control African swine fever spread. Journal of biomolecular structure & dynamics (2022)
Truc Ly Nguyen, Youngho Lee, Heebal Kim
Immunogenic Epitope-Based Vaccine Prediction from Surface Glycoprotein of MERS-CoV by Deploying Immunoinformatics Approach. International journal of peptide research and therapeutics 28 (3) (2022)
Vladimir Li, Chul Lee, DongAhn Yoo, Seoae Cho, Heebal Kim
In silico SARS-CoV-2 vaccine development for Omicron strain using reverse vaccinology. Genes & genomics 44 (8) (2022)
DongAhn Yoo, Junhee Park, Chul Lee, Injun Song, Young Ho Lee, Tery Yun, Hyemin Lee, Adriana Heguy, Jae-Yong Han, Jeremy S Dasen, Heebal Kim, Myungin Baek
Little skate genome provides insights into genetic programs essential for limb-based locomotion. eLife 11 (2022)
Youngseok Choi, Sojin Ahn, Myeongkyu Park, SaetByeol Lee, Seoae Cho, Heebal Kim
HGTree v2.0: a comprehensive database update for horizontal gene transfer (HGT) events detected by the tree-reconciliation method. Nucleic acids research (2022)
Donghyeok Seol, Jin Soo Lim, Samsun Sung, Young Ho Lee, Misun Jeong, Seoae Cho, Woori Kwak, Heebal Kim
Microbial Identification Using rRNA Operon Region: Database and Tool for Metataxonomics with Long-Read Sequence. Microbiology spectrum 10 (2) (2022)
Arang Rhie, Shane A McCarthy, Olivier Fedrigo, Joana Damas, Giulio Formenti, Sergey Koren, Marcela Uliano-Silva, William Chow, Arkarachai Fungtammasan, Juwan Kim, Chul Lee, Byung June Ko, Mark Chaisson, Gregory L Gedman, Lindsey J Cantin, Françoise Thibaud-Nissen, Leanne Haggerty, Iliana Bista, Michelle Smith, Bettina Haase, Jacquelyn Mountcastle, Sylke Winkler, Sadye Paez, Jason Howard, Sonja C Vernes, Tanya M Lama, Frank Grützner, Wesley C Warren, Christopher N Balakrishnan, David W Burt, Julia M George, Matthew T Biegler, David Iorns, Andrew Digby, Daryl Eason, Bruce C Robertson, Taylor Edwards, Mark Wilkinson, George Turner, Axel Meyer, Andreas F Kautt, Paolo Franchini, Harry William Detrich, Hannes Svardal, Maximilian Wagner, Gavin J P Naylor, Martin Pippel, Milan Malinsky, Mark Mooney, Maria Simbirsky, Brett T Hannigan, Trevor Pesout, Marlys Houck, Ann Misuraca, Sarah B Kingan, Richard J Hall, Zev Kronenberg, Ivan Sović, Christopher Dunn, Zemin Ning, Alex Hastie, Joyce Lee, Siddarth Selvaraj, Richard E Green, Nicholas H Putnam, Ivo Glynne Gut, Jay Ghurye, Erik Garrison, Ying Sims, Joanna Collins, Sarah Pelan, James Torrance, Alan Tracey, Jonathan Wood, Robel E Dagnew, Dengfeng Guan, Sarah E London, David F Clayton, Claudio V Mello, Samantha R Friedrich, Peter V Lovell, Ekaterina Osipova, Farooq O Al-Ajli, Simona Secomandi, Heebal Kim, Constantina Theofanopoulou, Michael Hiller, Yang Zhou, Robert S Harris, Kateryna D Makova, Paul Medvedev, Jinna Hoffman, Patrick Masterson, Karen Clark, Fergal J Martin, Kevin Howe, Paul Flicek, Brian P Walenz, Woori Kwak, Hiram Clawson, Mark E Diekhans, Luis Nassar, Benedict Paten, Robert H S Kraus, Andrew J Crawford, Marcus Thomas Pius Gilbert, Guo-Jie Zhang, Byrappa Venkatesh, Robert W Murphy, Klaus-Peter Koepfli, Joshua D Kapp, Warren E Johnson, Federica Di Palma, Tomas Marques-Bonet, Emma C Teeling, Tandy Warnow, Jennifer Marshall Graves, Oliver A Ryder, David Haussler, Stephen J O'Brien, Jonas Korlach, Harris A Lewin, Kerstin Howe, Eugene W Myers, Richard Durbin, Adam M Phillippy, Erich D Jarvis
Towards complete and error-free genome assemblies of all vertebrate species. Nature 592 (7856) (2021)
Soyeon Bae, Vladimir Li, Juyong Hong, Jin Nam Kim, Heebal Kim
Phylogenetic and evolutionary analysis of foot-and-mouth disease virus A/ASIA/Sea-97 lineage. Virus genes 57 (5) (2021)
Kwondo Kim, Taehyung Kwon, Tadelle Dessie, DongAhn Yoo, Okeyo Ally Mwai, Jisung Jang, Samsun Sung, SaetByeol Lee, Bashir Salim, Jaehoon Jung, Heesu Jeong, Getinet Mekuriaw Tarekegn, Abdulfatai Tijjani, Dajeong Lim, Seoae Cho, Sung Jong Oh, Hak-Kyo Lee, Jaemin Kim, Choongwon Jeong, Stephen Kemp, Olivier Hanotte, Heebal Kim
The mosaic genome of indigenous African cattle as a unique genetic resource for African pastoralism. Nature genetics 52 (10) (2020)
Minyu Song, Hyaekang Kim, Woori Kwak, Won Seo Park, Ja Yeon Yoo, Han Byul Kang, Jin-Hyoung Kim, Sun-Moon Kang, Hoa Van Ba, Bu-Min Kim, Mi-Hwa Oh, Heebal Kim, Jun-Sang Ham
Expression and Purification of Extracellular Solute-Binding Protein (ESBP) in Escherichia coli, the Extracellular Protein Derived from Bifidobacterium longum KACC 91563. Food science of animal resources 39 (4) (2019)
Kwondo Kim, Jaehoon Jung, Kelsey Caetano-Anollés, Samsun Sung, DongAhn Yoo, Bong-Hwan Choi, Hyung-Chul Kim, Jin-Young Jeong, Yong-Min Cho, Eung-Woo Park, Tae-Jeong Choi, Byoungho Park, Dajeong Lim, Heebal Kim
Artificial selection increased body weight but induced increase of runs of homozygosity in Hanwoo cattle. PloS one 13 (3) (2018)
Jisung Jang, Sook Hee Yoon, Wonseok Lee, Jihyun Yu, Joon Yoon, Seunghyun Shim, Heebal Kim
Time-calibrated phylogenomics of the porcine epidemic diarrhea virus: genome-wide insights into the spatio-temporal dynamics. Genes & genomics 40 (8) (2018)
Dongsung Jang, Joon Yoon, Mengistie Taye, Wonseok Lee, Taehyung Kwon, Seunghyun Shim, Heebal Kim
Multivariate genome-wide association studies on tenderness of Berkshire and Duroc pig breeds. Genes & genomics 40 (7) (2018)
Sook Hee Yoon, Wonseok Lee, Hyeonju Ahn, Kelsey Caetano-Anolles, Kyoung-Do Park, Heebal Kim
Origin and spread of Thoroughbred racehorses inferred from complete mitochondrial genome sequences: Phylogenomic and Bayesian coalescent perspectives. PloS one 13 (9) (2018)
Hyaekang Kim, Woori Kwak, Sook Hee Yoon, Dae-Kyung Kang, Heebal Kim
Horizontal gene transfer of Chlamydia: Novel insights from tree reconciliation. PloS one 13 (4) (2018)
Jaemin Kim, Olivier Hanotte, Okeyo Ally Mwai, Tadelle Dessie, Salim Bashir, Boubacar Diallo, Morris Agaba, Kwondo Kim, Woori Kwak, Samsun Sung, Minseok Seo, Hyeonsoo Jeong, Taehyung Kwon, Mengistie Taye, Ki-Duk Song, Dajeong Lim, Seoae Cho, Hyun-Jeong Lee, Duhak Yoon, Sung Jong Oh, Stephen Kemp, Hak-Kyo Lee, Heebal Kim
The genome landscape of indigenous African cattle. Genome biology 18 (1) (2017)
Mengistie Taye, Wonseok Lee, Soomin Jeon, Joon Yoon, Tadelle Dessie, Olivier Hanotte, Okeyo Ally Mwai, Stephen Kemp, Seoae Cho, Sung Jong Oh, Hak-Kyo Lee, Heebal Kim
Exploring evidence of positive selection signatures in cattle breeds selected for different traits. Mammalian genome : official journal of the International Mammalian Genome Society 28 (11-12) (2017)
Sohyoung Won, Jaehoon Jung, Eungwoo Park, Heebal Kim
Identification of genes related to intramuscular fat content of pigs using genome-wide association study. Asian-Australasian journal of animal sciences 31 (2) (2017)
Mengistie Taye, Wonseok Lee, Kelsey Caetano-Anolles, Tadelle Dessie, Olivier Hanotte, Okeyo Ally Mwai, Stephen Kemp, Seoae Cho, Sung Jong Oh, Hak-Kyo Lee, Heebal Kim
Whole genome detection of signature of positive selection in African cattle reveals selection for thermotolerance. Animal science journal = Nihon chikusan Gakkaiho 88 (12) (2017)
Mengistie Taye, Joon Yoon, Tadelle Dessie, Seoae Cho, Sung Jong Oh, Hak-Kyo Lee, Heebal Kim
Deciphering signature of selection affecting beef quality traits in Angus cattle. Genes & genomics 40 (1) (2017)
Minseok Seo, Jaeyoung Heo, Joon Yoon, Se-Young Kim, Yoon-Mo Kang, Jihyun Yu, Seoae Cho, Heebal Kim
Methanobrevibacter attenuation via probiotic intervention reduces flatulence in adult human: A non-randomised paired-design clinical trial of efficacy. PloS one 12 (9) (2017)

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Publication Activity (10 Years)

Top Topics

Top Venues

Heebal Kim