Anton Nekrutenko

Scopus Author ID ORCID

Publication Activity (10 Years)

Years Active: 2017-2024
Publications (10 Years): 18

Top Venues

Genome research

bioRxiv : the preprint server for biology

Molecular biology and evolution

NAR genomics and bioinformatics

Pennsylvania State University

Texas Tech University (PHD)

This page only lists publications with an associated author ORCID identifier.

Affiliation History

Pennsylvania State University Apr 01 2003

United States

Professor :: Biochemistry and Molecular Biology

Education History

Texas Tech University Dec 28 1995 - Aug 29 1998

United States

PHD :: Biology

Kyyivs'kij nacional'nij universytet imeni Tarasa Shevchenka Sep 01 1990 - May 30 1995

Ukraine

MSC :: Biology

Publications

A Burak Gulhan, Richard Burhans, Robert Harris, Mahmut Kandemir, Maximilian Haeussler, Anton Nekrutenko
KegAlign: Optimizing pairwise alignments with diagonal partitioning. bioRxiv : the preprint server for biology (2024)
Simon Bray, John Chilton, Matthias Bernt, Nicola Soranzo, Marius van den Beek, Bérénice Batut, Helena Rasche, Martin Čech, Peter J A Cock, Björn Grüning, Anton Nekrutenko
The Planemo toolkit for developing, deploying, and executing scientific data analyses in Galaxy and beyond. Genome research 33 (2) (2023)
Simon Bray, John Chilton, Matthias Bernt, Nicola Soranzo, Marius van den Beek, Bérénice Batut, Helena Rasche, Martin Čech, Peter J A Cock, Björn Grüning, Anton Nekrutenko
The Planemo toolkit for developing, deploying, and executing scientific data analyses in Galaxy and beyond. Genome research 33 (2) (2023)
Delphine Larivière, Linelle Abueg, Nadolina Brajuka, Cristóbal Gallardo-Alba, Bjoern Andreas Gruening, Byung June Ko, Alexander Ostrovsky, Marc Palmada-Flores, Brandon D Pickett, Keon Rabbani, Jennifer R Balacco, Mark J P Chaisson, Haoyu Cheng, Joanna Collins, Alexandra Denisova, Olivier Fedrigo, Guido Roberto Gallo, Alice Maria Giani, Grenville MacDonald Gooder, Nivesh Jain, Cassidy Johnson, Heebal Kim, Chul Lee, Tomas Marques-Bonet, Brian O'Toole, Arang Rhie, Simona Secomandi, Marcella Sozzoni, Tatiana Tilley, Marcela Uliano-Silva, Marius van den Beek, Robert M Waterhouse, Adam M Phillippy, Erich D Jarvis, Michael C Schatz, Anton Nekrutenko, Giulio Formenti
Scalable, accessible, and reproducible reference genome assembly and evaluation in Galaxy. bioRxiv : the preprint server for biology (2023)
Simon Bray, John Chilton, Matthias Bernt, Nicola Soranzo, Marius van den Beek, Bérénice Batut, Helena Rasche, Martin Čech, Peter J A Cock, Björn Grüning, Anton Nekrutenko
The Planemo toolkit for developing, deploying, and executing scientific data analyses in Galaxy and beyond. Genome research 33 (2) (2023)
Simon Bray, John Chilton, Matthias Bernt, Nicola Soranzo, Marius van den Beek, Bérénice Batut, Helena Rasche, Martin Čech, Peter J A Cock, Björn Grüning, Anton Nekrutenko
The Planemo toolkit for developing, deploying, and executing scientific data analyses in Galaxy and beyond. Genome research (2023)
Simon Bray, John Chilton, Matthias Bernt, Nicola Soranzo, Marius van den Beek, Bérénice Batut, Helena Rasche, Martin Čech, Peter J A Cock, Björn Grüning, Anton Nekrutenko
The Planemo toolkit for developing, deploying, and executing scientific data analyses in Galaxy and beyond. Genome research 33 (2) (2023)
Darren P Martin, Spyros Lytras, Alexander G Lucaci, Wolfgang Maier, Björn Grüning, Stephen D Shank, Steven Weaver, Oscar A MacLean, Richard J Orton, Philippe Lemey, Maciej F Boni, Houriiyah Tegally, Gordon W Harkins, Cathrine Scheepers, Jinal N Bhiman, Josie Everatt, Daniel G Amoako, James Emmanuel San, Jennifer Giandhari, Alex Sigal, null null, Carolyn Williamson, Nei-Yuan Hsiao, Anne von Gottberg, Arne De Klerk, Robert W Shafer, David L Robertson, Robert J Wilkinson, B Trevor Sewell, Richard Lessells, Anton Nekrutenko, Allison J Greaney, Tyler N Starr, Jesse D Bloom, Ben Murrell, Eduan Wilkinson, Ravindra Kumar Gupta, Tulio de Oliveira, Sergei L Kosakovsky Pond
Selection Analysis Identifies Clusters of Unusual Mutational Changes in Omicron Lineage BA.1 That Likely Impact Spike Function. Molecular biology and evolution 39 (4) (2022)
Gundula Povysil, Monika Heinzl, Renato Salazar, Nicholas Stoler, Anton Nekrutenko, Irene Tiemann-Boege
Increased yields of duplex sequencing data by a series of quality control tools. NAR genomics and bioinformatics 3 (1) (2021)
Han Mei, Sergei Kosakovsky Pond, Anton Nekrutenko
Stepwise Evolution and Exceptional Conservation of ORF1a/b Overlap in Coronaviruses. Molecular biology and evolution 38 (12) (2021)
Wolfgang Maier, Simon Bray, Marius van den Beek, Dave Bouvier, Nathaniel Coraor, Milad Miladi, Babita Singh, Jordi Rambla De Argila, Dannon Baker, Nathan Roach, Simon Gladman, Frederik Coppens, Darren P Martin, Andrew Lonie, Bjoern Andreas Gruening, Sergei L Kosakovsky Pond, Anton Nekrutenko
Freely accessible ready to use global infrastructure for SARS-CoV-2 monitoring. bioRxiv : the preprint server for biology (2021)
Nicholas Stoler, Anton Nekrutenko
Sequencing error profiles of Illumina sequencing instruments. NAR genomics and bioinformatics 3 (1) (2021)
Beatriz Serrano-Solano, Melanie Christine Föll, Cristóbal Gallardo-Alba, Anika Erxleben, Helena Rasche, Saskia Hiltemann, Matthias Fahrner, Mark J Dunning, Marcel H Schulz, Beáta Scholtz, Dave Clements, Anton Nekrutenko, Bérénice Batut, Björn A Grüning
Fostering accessible online education using Galaxy as an e-learning platform. PLoS computational biology 17 (5) (2021)
Delphine Larivière, Laura Wickham, Kenneth Keiler, Anton Nekrutenko, null null
Reproducible and accessible analysis of transposon insertion sequencing in Galaxy for qualitative essentiality analyses. BMC microbiology 21 (1) (2021)
Wolfgang Maier, Simon A Bray, Marius van den Beek, Dave Bouvier, Nathan Coraor, Milad Miladi, Babita Singh, Jordi Rambla De Argila, Dannon Baker, Nathan Roach, Simon Gladman, Frederik Coppens, Darren P Martin, Andrew Lonie, Björn Grüning, Sergei L Kosakovsky Pond, Anton Nekrutenko
Ready-to-use public infrastructure for global SARS-CoV-2 monitoring. Nature biotechnology 39 (10) (2021)
Nicholas Stoler, Barbara Arbeithuber, Gundula Povysil, Monika Heinzl, Renato Salazar, Kateryna D Makova, Irene Tiemann-Boege, Anton Nekrutenko
Family reunion via error correction: an efficient analysis of duplex sequencing data. BMC bioinformatics 21 (1) (2020)
Dannon Baker, Marius van den Beek, Daniel Blankenberg, Dave Bouvier, John M Chilton, Nate Coraor, Frederik Coppens, Ignacio Eguinoa, Simon Gladman, Bjoern Andreas Gruening, Nicholas Keener, Delphine Larivière, Andrew J Lonie, Sergei L Kosakovsky Pond, Wolfgang Maier, Anton Nekrutenko, James Taylor, Steven Weaver
No more business as usual: Agile and effective responses to emerging pathogen threats require open data and open analytics. PLoS pathogens 16 (8) (2020)
Bjoern Andreas Gruening, Helena Rasche, Boris Rebolledo-Jaramillo, Carl Eberhard, Torsten Houwaart, John M Chilton, Nate Coraor, Rolf Backofen, James Taylor, Anton Nekrutenko
Jupyter and Galaxy: Easing entry barriers into complex data analyses for biomedical researchers. PLoS computational biology 13 (5) (2017)

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Publication Activity (10 Years)

Top Topics

Top Venues

Anton Nekrutenko