Ke Xu

Publication Activity (10 Years)

Years Active: 2019-2024
Publications (10 Years): 41

Top Topics

Alcohol Consumption

Posttraumatic Stress Disorder

Dna Methylation

Top Venues

Nature medicine

Communications biology

Translational psychiatry

This page only lists publications with an associated author ORCID identifier.

Publications

Xiaoyu Liang, Bradley E Aouizerat, Kaku So-Armah, Mardge H Cohen, Vincent C Marconi, Ke Xu, Amy C Justice
DNA methylation-based telomere length is associated with HIV infection, physical frailty, cancer, and all-cause mortality. Aging cell 23 (7) (2024)
Sylvanus Toikumo, Rachel Vickers-Smith, Zeal Jinwala, Heng Xu, Divya Saini, Emily E Hartwell, Mirko Pavicic Venegas, Kyle A Sullivan, Ke Xu, Daniel A Jacobson, Joshua C Gray, Christopher T Rentsch, null null, Eli Stahl, Martin Cheatle, Hang Zhou, Stephen G Waxman, Amy C Justice, Rachel L Kember, Henry R Kranzler
A multi-ancestry genetic study of pain intensity in 598,339 veterans. Nature medicine 30 (4) (2024)
Xinyu Zhang, Ying Hu, Ral E Vandenhoudt, Chunhua Yan, Vincent C Marconi, Mardge H Cohen, Zuoheng Wang, Amy C Justice, Bradley E Aouizerat, Ke Xu
Computationally inferred cell-type specific epigenome-wide DNA methylation analysis unveils distinct methylation patterns among immune cells for HIV infection in three cohorts. PLoS pathogens 20 (3) (2024)
Xiaoyu Liang, Bradley E Aouizerat, Kaku So-Armah, Mardge H Cohen, Vincent C Marconi, Ke Xu, Amy C Justice
DNA methylation-based telomere length is associated with HIV infection, physical frailty, cancer, and all-cause mortality. Aging cell (2024)
Sylvanus Toikumo, Rachel Vickers-Smith, Zeal Jinwala, Heng Xu, Divya Saini, Emily E Hartwell, Mirko Pavicic Venegas, Kyle A Sullivan, Ke Xu, Daniel A Jacobson, Joshua C Gray, Christopher T Rentsch, null null, Eli Stahl, Martin Cheatle, Hang Zhou, Stephen G Waxman, Amy C Justice, Rachel L Kember, Henry R Kranzler
A multi-ancestry genetic study of pain intensity in 598,339 veterans. Nature medicine (2024)
Xinyu Zhang, Ying Hu, Ral E Vandenhoudt, Chunhua Yan, Vincent C Marconi, Mardge H Cohen, Zuoheng Wang, Amy C Justice, Bradley E Aouizerat, Ke Xu
Computationally inferred cell-type specific epigenome-wide DNA methylation analysis unveils distinct methylation patterns among immune cells for HIV infection in three cohorts. PLoS pathogens 20 (3) (2024)
Xiaoyu Liang, Bradley E Aouizerat, Kaku So-Armah, Mardge H Cohen, Vincent C Marconi, Ke Xu, Amy C Justice
DNA methylation-based telomere length is associated with HIV infection, physical frailty, cancer, and all-cause mortality. Aging cell 23 (7) (2024)
Sylvanus Toikumo, Rachel Vickers-Smith, Zeal Jinwala, Heng Xu, Divya Saini, Emily E Hartwell, Mirko Pavicic Venegas, Kyle A Sullivan, Ke Xu, Daniel A Jacobson, Joshua C Gray, Christopher T Rentsch, null null, Eli Stahl, Martin Cheatle, Hang Zhou, Stephen G Waxman, Amy C Justice, Rachel L Kember, Henry R Kranzler
A multi-ancestry genetic study of pain intensity in 598,339 veterans. Nature medicine (2024)
Sylvanus Toikumo, Rachel Vickers-Smith, Zeal Jinwala, Heng Xu, Divya Saini, Emily E Hartwell, Mirko Pavicic Venegas, Kyle A Sullivan, Ke Xu, Daniel A Jacobson, Joshua C Gray, Christopher T Rentsch, null null, Eli Stahl, Martin Cheatle, Hang Zhou, Stephen G Waxman, Amy C Justice, Rachel L Kember, Henry R Kranzler
Author Correction: A multi-ancestry genetic study of pain intensity in 598,339 veterans. Nature medicine (2024)
Sylvanus Toikumo, Rachel Vickers-Smith, Zeal Jinwala, Heng Xu, Divya Saini, Emily E Hartwell, Mirko Pavicic Venegas, Kyle A Sullivan, Ke Xu, Daniel A Jacobson, Joshua C Gray, Christopher T Rentsch, null null, Eli Stahl, Martin Cheatle, Hang Zhou, Stephen G Waxman, Amy C Justice, Rachel L Kember, Henry R Kranzler
A multi-ancestry genetic study of pain intensity in 598,339 veterans. Nature medicine 30 (4) (2024)
Sylvanus Toikumo, Rachel Vickers-Smith, Zeal Jinwala, Heng Xu, Divya Saini, Emily E Hartwell, Mirko Pavicic Venegas, Kyle A Sullivan, Ke Xu, Daniel A Jacobson, Joshua C Gray, Christopher T Rentsch, null null, Eli Stahl, Martin Cheatle, Hang Zhou, Stephen G Waxman, Amy C Justice, Rachel L Kember, Henry R Kranzler
A multi-ancestry genetic study of pain intensity in 598,339 veterans. Nature medicine 30 (4) (2024)
Sylvanus Toikumo, Rachel Vickers-Smith, Zeal Jinwala, Heng Xu, Divya Saini, Emily E Hartwell, Mirko Pavicic Venegas, Kyle A Sullivan, Ke Xu, Daniel A Jacobson, Joshua C Gray, Christopher T Rentsch, null null, Eli Stahl, Martin Cheatle, Hang Zhou, Stephen G Waxman, Amy C Justice, Rachel L Kember, Henry R Kranzler
A multi-ancestry genetic study of pain intensity in 598,339 veterans. Nature medicine 30 (4) (2024)
Sylvanus Toikumo, Rachel Vickers-Smith, Zeal Jinwala, Heng Xu, Divya Saini, Emily E Hartwell, Mirko Pavicic Venegas, Kyle A Sullivan, Ke Xu, Daniel A Jacobson, Joshua C Gray, Christopher T Rentsch, null null, Eli Stahl, Martin Cheatle, Hang Zhou, Stephen G Waxman, Amy C Justice, Rachel L Kember, Henry R Kranzler
Author Correction: A multi-ancestry genetic study of pain intensity in 598,339 veterans. Nature medicine (2024)
Xinyu Zhang, Ying Hu, Ral E Vandenhoudt, Chunhua Yan, Vincent C Marconi, Mardge H Cohen, Zuoheng Wang, Amy C Justice, Bradley E Aouizerat, Ke Xu
Computationally inferred cell-type specific epigenome-wide DNA methylation analysis unveils distinct methylation patterns among immune cells for HIV infection in three cohorts. PLoS pathogens 20 (3) (2024)
Xinyu Zhang, Ying Hu, Ral E Vandenhoudt, Chunhua Yan, Vincent C Marconi, Mardge H Cohen, Zuoheng Wang, Amy C Justice, Bradley E Aouizerat, Ke Xu
Computationally inferred cell-type specific epigenome-wide DNA methylation analysis unveils distinct methylation patterns among immune cells for HIV infection in three cohorts. PLoS pathogens 20 (3) (2024)
Sylvanus Toikumo, Rachel Vickers-Smith, Zeal Jinwala, Heng Xu, Divya Saini, Emily E Hartwell, Mirko Pavicic Venegas, Kyle A Sullivan, Ke Xu, Daniel A Jacobson, Joshua C Gray, Christopher T Rentsch, null null, Eli Stahl, Martin Cheatle, Hang Zhou, Stephen G Waxman, Amy C Justice, Rachel L Kember, Henry R Kranzler
A multi-ancestry genetic study of pain intensity in 598,339 veterans. Nature medicine 30 (4) (2024)
Sylvanus Toikumo, Rachel Vickers-Smith, Zeal Jinwala, Heng Xu, Divya Saini, Emily E Hartwell, Mirko Pavicic Venegas, Kyle A Sullivan, Ke Xu, Daniel A Jacobson, Joshua C Gray, Christopher T Rentsch, null null, Eli Stahl, Martin Cheatle, Hang Zhou, Stephen G Waxman, Amy C Justice, Rachel L Kember, Henry R Kranzler
A multi-ancestry genetic study of pain intensity in 598,339 veterans. Nature medicine 30 (4) (2024)
Youshu Cheng, Cecilia Dao, Hang Zhou, Boyang Li, Rachel L Kember, Sylvanus Toikumo, Hongyu Zhao, Joshua C Gray, Henry R Kranzler, Amy C Justice, Ke Xu
Multi-trait genome-wide association analyses leveraging alcohol use disorder findings identify novel loci for smoking behaviors in the Million Veteran Program. Translational psychiatry 13 (1) (2023)
Youshu Cheng, Boyang Li, Xinyu Zhang, Bradley E Aouizerat, Hongyu Zhao, Ke Xu
Reply to: Genetic differentiation at probe SNPs leads to spurious results in meQTL discovery. Communications biology 6 (1) (2023)
Youshu Cheng, Boyang Li, Xinyu Zhang, Bradley E Aouizerat, Hongyu Zhao, Ke Xu
Reply to: Genetic differentiation at probe SNPs leads to spurious results in meQTL discovery. Communications biology 6 (1) (2023)
Youshu Cheng, Boyang Li, Xinyu Zhang, Bradley E Aouizerat, Hongyu Zhao, Ke Xu
Reply to: Genetic differentiation at probe SNPs leads to spurious results in meQTL discovery. Communications biology 6 (1) (2023)
Youshu Cheng, Cecilia Dao, Hang Zhou, Boyang Li, Rachel L Kember, Sylvanus Toikumo, Hongyu Zhao, Joshua C Gray, Henry R Kranzler, Amy C Justice, Ke Xu
Multi-trait genome-wide association analyses leveraging alcohol use disorder findings identify novel loci for smoking behaviors in the Million Veteran Program. Translational psychiatry 13 (1) (2023)
Youshu Cheng, Boyang Li, Xinyu Zhang, Bradley E Aouizerat, Hongyu Zhao, Ke Xu
Reply to: Genetic differentiation at probe SNPs leads to spurious results in meQTL discovery. Communications biology 6 (1) (2023)
Youshu Cheng, Boyang Li, Xinyu Zhang, Bradley E Aouizerat, Hongyu Zhao, Ke Xu
Reply to: Genetic differentiation at probe SNPs leads to spurious results in meQTL discovery. Communications biology 6 (1) (2023)
Youshu Cheng, Boyang Li, Xinyu Zhang, Bradley E Aouizerat, Hongyu Zhao, Ke Xu
Reply to: Genetic differentiation at probe SNPs leads to spurious results in meQTL discovery. Communications biology 6 (1) (2023)
Youshu Cheng, Boyang Li, Xinyu Zhang, Bradley E Aouizerat, Hongyu Zhao, Ke Xu
Reply to: Genetic differentiation at probe SNPs leads to spurious results in meQTL discovery. Communications biology 6 (1) (2023)
Youshu Cheng, Cecilia Dao, Hang Zhou, Boyang Li, Rachel L Kember, Sylvanus Toikumo, Hongyu Zhao, Joshua C Gray, Henry R Kranzler, Amy C Justice, Ke Xu
Multi-trait genome-wide association analyses leveraging alcohol use disorder findings identify novel loci for smoking behaviors in the Million Veteran Program. Translational psychiatry 13 (1) (2023)
Youshu Cheng, Boyang Li, Xinyu Zhang, Bradley E Aouizerat, Hongyu Zhao, Ke Xu
Reply to: Genetic differentiation at probe SNPs leads to spurious results in meQTL discovery. Communications biology 6 (1) (2023)
Fang Fang, Bryan C Quach, Kaitlyn G Lawrence, Jenny van Dongen, Jesse A Marks, Sara Lundgren, Mingkuan Lin, Veronika V Odintsova, Ricardo Costeira, Zongli Xu, Linran Zhou, Meisha Mandal, Yujing Xia, Jacqueline M Vink, Laura J Bierut, Miina Ollikainen, Jack A Taylor, Jordana T Bell, Jaakko A Kaprio, Dorret I Boomsma, Ke Xu, Dale R Sandler, Dana B Hancock, Eric O Johnson
Trans-ancestry epigenome-wide association meta-analysis of DNA methylation with lifetime cannabis use. Molecular psychiatry (2023)
Hang Zhou, Rachel L Kember, Joseph D Deak, Heng Xu, Sylvanus Toikumo, Kai Yuan, Penelope A Lind, Leila Farajzadeh, Lu Wang, Alexander S Hatoum, Jessica Johnson, Hyunjoon Lee, Travis T Mallard, Jiayi Xu, Keira J A Johnston, Emma C Johnson, Trine Tollerup Nielsen, Marco Galimberti, Cecilia Dao, Daniel F Levey, Cassie Overstreet, Enda M Byrne, Nathan A Gillespie, Scott D Gordon, Ian B Hickie, John B Whitfield, Ke Xu, Hongyu Zhao, Laura M Huckins, Lea K Davis, Sandra Sanchez-Roige, Pamela A F Madden, Andrew C Heath, Sarah E Medland, Nicholas G Martin, Tian Ge, Jordan W Smoller, David Michael Hougaard, Anders Dupont Børglum, Ditte Demontis, John H Krystal, J Michael Gaziano, Howard J Edenberg, Arpana Agrawal, null null, Amy C Justice, Murray B Stein, Henry R Kranzler, Joshua C Gray
Multi-ancestry study of the genetics of problematic alcohol use in over 1 million individuals. Nature medicine 29 (12) (2023)
Boyang Li, Bradley E Aouizerat, Youshu Cheng, Kathryn Anastos, Amy C Justice, Hongyu Zhao, Ke Xu
Incorporating local ancestry improves identification of ancestry-associated methylation signatures and meQTLs in African Americans. Communications biology 5 (1) (2022)
Sheila Tiemi Nagamatsu, Robert H Pietrzak, Ke Xu, John H Krystal, Joshua C Gray, Janitza Liz Montalvo-Ortiz
Dissecting the epigenomic differences between smoking and nicotine dependence in a veteran cohort. Addiction biology 28 (1) (2022)
Sheila Tiemi Nagamatsu, Robert H Pietrzak, Ke Xu, John H Krystal, Joshua C Gray, Janitza Liz Montalvo-Ortiz
Dissecting the epigenomic differences between smoking and nicotine dependence in a veteran cohort. Addiction biology 28 (1) (2022)
Janitza L Montalvo-Ortiz, Joshua C Gray, Zhongshan Cheng, Matthew J Girgenti, Ke Xu, Xinyu Zhang, Shyamalika Gopalan, Hang Zhou, Ronald S Duman, Steven M Southwick, John H Krystal, null null, Robert H Pietrzak
Epigenome-wide association study of posttraumatic stress disorder identifies novel loci in U.S. military veterans. Translational psychiatry 12 (1) (2022)
Xiaoyu Liang, Rajita Sinha, Amy C Justice, Mardge H Cohen, Bradley E Aouizerat, Ke Xu
A new monocyte epigenetic clock reveals nonlinear effects of alcohol consumption on biological aging in three independent cohorts (N = 2242). Alcoholism, clinical and experimental research 46 (5) (2022)
Zachary M Harvanek, Nia Fogelman, Ke Xu, Rajita Sinha
Psychological and biological resilience modulates the effects of stress on epigenetic aging. Translational psychiatry 11 (1) (2021)
Chang Shu, Amy C Justice, Xinyu Zhang, Zuoheng Wang, Dana B Hancock, Eric O Johnson, Ke Xu
DNA methylation mediates the effect of cocaine use on HIV severity. Clinical epigenetics 12 (1) (2020)
Jovan Tanevski, Thin Nguyen, Buu Truong, Nikos Karaiskos, Mehmet Eren Ahsen, Xinyu Zhang, Chang Shu, Ke Xu, Xiaoyu Liang, Ying Hu, Hoang Vv Pham, Li Xiaomei, Thuc Duy Le, Adi Laurentiu Tarca, Gaurav Bhatti, Roberto Romero, Nestoras Karathanasis, Phillipe Loher, Yang Chen, Zhengqing Ouyang, Disheng Mao, Yuping Zhang, Maryam Zand, Jianhua Ruan, Christoph Hafemeister, Peng Qiu, Duc Tran, Tin Nguyen, Attila Gabor, Thomas Yu, Justin Guinney, Enrico Glaab, Roland Krause, Peter Banda, null null, Gustavo Stolovitzky, Nikolaus Rajewsky, Julio Saez-Rodriguez, Pablo Meyer
Gene selection for optimal prediction of cell position in tissues from single-cell transcriptomics data. Life science alliance 3 (11) (2020)
Chang Shu, Xinyu Zhang, Bradley E Aouizerat, Ke Xu
Comparison of methylation capture sequencing and Infinium MethylationEPIC array in peripheral blood mononuclear cells. Epigenetics & chromatin 13 (1) (2020)
Ke Xu, Janitza L Montalvo-Ortiz, Xinyu Zhang, Steven M Southwick, John H Krystal, Robert H Pietrzak, Joshua C Gray
Epigenome-Wide DNA Methylation Association Analysis Identified Novel Loci in Peripheral Cells for Alcohol Consumption Among European American Male Veterans. Alcoholism, clinical and experimental research 43 (10) (2019)
Weimiao Wu, Zhong Wang, Ke Xu, Xinyu Zhang, Amei Amei, Joshua C Gray, Hongyu Zhao, Amy C Justice, Zuoheng Wang
Retrospective Association Analysis of Longitudinal Binary Traits Identifies Important Loci and Pathways in Cocaine Use. Genetics 213 (4) (2019)