John F Fullard (John Fullard)

Publication Activity (10 Years)

Years Active: 2018-2024
Publications (10 Years): 66

Top Topics

Bipolar Disorder

Transcription Factor

Top Venues

Science (New York, N.Y.)

Research square

Nature communications

bioRxiv : the preprint server for biology

This page only lists publications with an associated author ORCID identifier.

Publications

Miguel Rodriguez de Los Santos, Brian H Kopell, Ariela Buxbaum Grice, Gauri Ganesh, Andy Yang, Pardis Amini, Lora E Liharska, Eric Vornholt, John F Fullard, Pengfei Dong, Eric Park, Sarah Zipkowitz, Deepak A Kaji, Ryan C Thompson, Dongjing Liu, You Jeong Park, Esther Cheng, Kimia Ziafat, Emily Moya, Brian Fennessy, Lillian Wilkins, Hannah Silk, Lisa M Linares, Brendan Sullivan, Vanessa Cohen, Prashant Kota, Claudia Feng, Jessica S Johnson, Marysia-Kolbe Rieder, Joseph Scarpa, Girish Nitin Nadkarni, Minghui Wang, Bin Zhang, Pamela Sklar, Noam D Beckmann, Eric E Schadt, Panagiotis Roussos, Alexander W Charney, Michael S Breen
Divergent landscapes of A-to-I editing in postmortem and living human brain. Nature communications 15 (1) (2024)
Miguel Rodriguez de Los Santos, Brian H Kopell, Ariela Buxbaum Grice, Gauri Ganesh, Andy Yang, Pardis Amini, Lora E Liharska, Eric Vornholt, John F Fullard, Pengfei Dong, Eric Park, Sarah Zipkowitz, Deepak A Kaji, Ryan C Thompson, Dongjing Liu, You Jeong Park, Esther Cheng, Kimia Ziafat, Emily Moya, Brian Fennessy, Lillian Wilkins, Hannah Silk, Lisa M Linares, Brendan Sullivan, Vanessa Cohen, Prashant Kota, Claudia Feng, Jessica S Johnson, Marysia-Kolbe Rieder, Joseph Scarpa, Girish Nitin Nadkarni, Minghui Wang, Bin Zhang, Pamela Sklar, Noam D Beckmann, Eric E Schadt, Panagiotis Roussos, Alexander W Charney, Michael S Breen
Divergent landscapes of A-to-I editing in postmortem and living human brain. Nature communications 15 (1) (2024)
Biao Zeng, Jaroslav Bendl, Chengyu Deng, Donghoon Lee, Ruth Misir, Sarah M Reach, Steven P Kleopoulos, Pavan Auluck, Stefano Marenco, David A Lewis, Vahram Haroutunian, Nadav Ahituv, John F Fullard, Gabriel E Hoffman, Panagiotis Roussos
Genetic regulation of cell type-specific chromatin accessibility shapes brain disease etiology. Science (New York, N.Y.) 384 (6698) (2024)
W Brad Ruzicka, Shahin Mohammadi, John F Fullard, Jose Davila-Velderrain, Sivan Subburaju, Daniel Reed Tso, Makayla Hourihan, Shan Jiang, Hao-Chih Lee, Jaroslav Bendl, null null, Georgios Voloudakis, Vahram Haroutunian, Gabriel E Hoffman, Panagiotis Roussos, Manolis Kellis, null null
Single-cell multi-cohort dissection of the schizophrenia transcriptome. Science (New York, N.Y.) 384 (6698) (2024)
Miguel Rodriguez de Los Santos, Brian H Kopell, Ariela Buxbaum Grice, Gauri Ganesh, Andy Yang, Pardis Amini, Lora E Liharska, Eric Vornholt, John F Fullard, Pengfei Dong, Eric Park, Sarah Zipkowitz, Deepak A Kaji, Ryan C Thompson, Dongjing Liu, You Jeong Park, Esther Cheng, Kimia Ziafat, Emily Moya, Brian Fennessy, Lillian Wilkins, Hannah Silk, Lisa M Linares, Brendan Sullivan, Vanessa Cohen, Prashant Kota, Claudia Feng, Jessica S Johnson, Marysia-Kolbe Rieder, Joseph Scarpa, Girish Nitin Nadkarni, Minghui Wang, Bin Zhang, Pamela Sklar, Noam D Beckmann, Eric E Schadt, Panagiotis Roussos, Alexander W Charney, Michael S Breen
Divergent landscapes of A-to-I editing in postmortem and living human brain. Nature communications 15 (1) (2024)
Panagiotis Roussos, Roman Kosoy, John F Fullard, Jaroslav Bendl, Steven Kleopoulos, Zhiping Shao, Stathis Argyriou, Deepika Mathur, James M Vicari, Yixuan Ma, Jack Humphrey, Erica Brophy, Towfique Raj, Pavel Katsel, Georgios Voloudakis, Donghoon Lee, David Bennett, Vahram Haroutunian, Gabriel E Hoffman
Alzheimer's disease transcriptional landscape in ex-vivo human microglia. Research square (2024)
Panagiotis Roussos, Yixuan Ma, Kiran Girdhar, Gabriel E Hoffman, John F Fullard, Jaroslav Bendl
Sex differences in brain cell-type specific chromatin accessibility in schizophrenia. Research square (2024)
W Brad Ruzicka, Shahin Mohammadi, John F Fullard, Jose Davila-Velderrain, Sivan Subburaju, Daniel Reed Tso, Makayla Hourihan, Shan Jiang, Hao-Chih Lee, Jaroslav Bendl, null null, Georgios Voloudakis, Vahram Haroutunian, Gabriel E Hoffman, Panagiotis Roussos, Manolis Kellis, null null
Single-cell multi-cohort dissection of the schizophrenia transcriptome. Science (New York, N.Y.) 384 (6698) (2024)
Miguel Rodriguez de Los Santos, Brian H Kopell, Ariela Buxbaum Grice, Gauri Ganesh, Andy Yang, Pardis Amini, Lora E Liharska, Eric Vornholt, John F Fullard, Pengfei Dong, Eric Park, Sarah Zipkowitz, Deepak A Kaji, Ryan C Thompson, Dongjing Liu, You Jeong Park, Esther Cheng, Kimia Ziafat, Emily Moya, Brian Fennessy, Lillian Wilkins, Hannah Silk, Lisa M Linares, Brendan Sullivan, Vanessa Cohen, Prashant Kota, Claudia Feng, Jessica S Johnson, Marysia-Kolbe Rieder, Joseph Scarpa, Girish Nitin Nadkarni, Minghui Wang, Bin Zhang, Pamela Sklar, Noam D Beckmann, Eric E Schadt, Panagiotis Roussos, Alexander W Charney, Michael S Breen
Divergent landscapes of A-to-I editing in postmortem and living human brain. Nature communications 15 (1) (2024)
Panagiotis Roussos, Roman Kosoy, John F Fullard, Jaroslav Bendl, Steven Kleopoulos, Zhiping Shao, Stathis Argyriou, Deepika Mathur, James M Vicari, Yixuan Ma, Jack Humphrey, Erica Brophy, Towfique Raj, Pavel Katsel, Georgios Voloudakis, Donghoon Lee, David Bennett, Vahram Haroutunian, Gabriel E Hoffman
Alzheimer's disease transcriptional landscape in ex-vivo human microglia. Research square (2024)
Prashant S Emani, Jason J Liu, Declan Clarke, Matthew Jensen, Jonathan Warrell, Chirag Gupta, Ran Meng, Che Yu Lee, Siwei Xu, Cagatay Dursun, Shaoke Lou, Yuhang Chen, Zhiyuan Chu, Timur Galeev, Ahyeon Hwang, Yunyang Li, Zhengchang Su, Xiao Zhou, null null, Trygve E Bakken, Jaroslav Bendl, Lucy K Bicks, Tanima Chatterjee, Lijun Cheng, Yuyan Cheng, Yi Dai, Ziheng Duan, Mary Flaherty, John F Fullard, Michael Gancz, Diego Garrido-Martín, Sophia C Gaynor-Gillett, Jennifer Grundman, Natalie Hawken, Ella Henry, Gabriel E Hoffman, Ao Huang, Yunzhe Jiang, Ting Jin, Nikolas L Jorstad, Riki Kawaguchi, Saniya Khullar, Jianyin Liu, Junhao Liu, Shuang Liu, Shaojie Ma, Michael Margolis, Samantha Mazariegos, Jill E Moore, Jennifer R Moran, Eric Nguyen, Nishigandha Phalke, Milos Pjanic, Henry E Pratt, Diana Quintero, Ananya S Rajagopalan, Tiernon R Riesenmy, Nicole Shedd, Manman Shi, Megan Spector, Rosemarie Terwilliger, Kyle J Travaglini, Brie Wamsley, Gaoyuan Wang, Yan Xia, Shaohua Xiao, Andrew C Yang, Suchen Zheng, Michael J Gandal, Donghoon Lee, Ed S Lein, Panagiotis Roussos, Nenad Sestan, Nishigandha Phalke, Kevin P White, Hyejung Won, Matthew J Girgenti, Jing Zhang, Daifeng Wang, Daniel H Geschwind, Mark B Gerstein, null null
Single-cell genomics and regulatory networks for 388 human brains. Science (New York, N.Y.) 384 (6698) (2024)
Chinwe Nwaneshiudu, Kiran Girdhar, Steven P Kleopoulos, John F Fullard, Eduardo Roque Butelman, Muhammad A Parvaz, Rita Z Goldstein, Nelly Alia-Klein, Panagiotis Roussos
Dynamic alterations in gene co-expression networks and gene-transcript associations characterize co-morbidities in cocaine use disorder. bioRxiv : the preprint server for biology (2024)
Panagiotis Roussos, Roman Kosoy, John F Fullard, Jaroslav Bendl, Steven Kleopoulos, Zhiping Shao, Stathis Argyriou, Deepika Mathur, James M Vicari, Yixuan Ma, Jack Humphrey, Erica Brophy, Towfique Raj, Pavel Katsel, Georgios Voloudakis, Donghoon Lee, David Bennett, Vahram Haroutunian, Gabriel E Hoffman
Alzheimer's disease transcriptional landscape in ex-vivo human microglia. Research square (2024)
Miguel Rodriguez de Los Santos, Brian H Kopell, Ariela Buxbaum Grice, Gauri Ganesh, Andy Yang, Pardis Amini, Lora E Liharska, Eric Vornholt, John F Fullard, Pengfei Dong, Eric Park, Sarah Zipkowitz, Deepak A Kaji, Ryan C Thompson, Dongjing Liu, You Jeong Park, Esther Cheng, Kimia Ziafat, Emily Moya, Brian Fennessy, Lillian Wilkins, Hannah Silk, Lisa M Linares, Brendan Sullivan, Vanessa Cohen, Prashant Kota, Claudia Feng, Jessica S Johnson, Marysia-Kolbe Rieder, Joseph Scarpa, Girish Nitin Nadkarni, Minghui Wang, Bin Zhang, Pamela Sklar, Noam D Beckmann, Eric E Schadt, Panagiotis Roussos, Alexander W Charney, Michael S Breen
Divergent landscapes of A-to-I editing in postmortem and living human brain. Nature communications 15 (1) (2024)
Rujia Dai, Tianyao Chu, Ming Zhang, Xuan Wang, Alexandre Jourdon, Feinan Wu, Jessica Mariani, Flora M Vaccarino, Donghoon Lee, John F Fullard, Gabriel E Hoffman, Panagiotis Roussos, Yue Wang, Xusheng Wang, Dalila Pinto, Sidney H Wang, Chunling Zhang, null null, Chao Chen, Yanling Liu
Evaluating performance and applications of sample-wise cell deconvolution methods on human brain transcriptomic data. Science advances 10 (21) (2024)
Panagiotis Roussos, Yixuan Ma, Kiran Girdhar, Gabriel E Hoffman, John F Fullard, Jaroslav Bendl
Sex differences in brain cell-type specific chromatin accessibility in schizophrenia. Research square (2024)
Rujia Dai, Tianyao Chu, Ming Zhang, Xuan Wang, Alexandre Jourdon, Feinan Wu, Jessica Mariani, Flora M Vaccarino, Donghoon Lee, John F Fullard, Gabriel E Hoffman, Panagiotis Roussos, Yue Wang, Xusheng Wang, Dalila Pinto, Sidney H Wang, Chunling Zhang, null null, Chao Chen, Yanling Liu
Evaluating performance and applications of sample-wise cell deconvolution methods on human brain transcriptomic data. Science advances 10 (21) (2024)
Rujia Dai, Tianyao Chu, Ming Zhang, Xuan Wang, Alexandre Jourdon, Feinan Wu, Jessica Mariani, Flora M Vaccarino, Donghoon Lee, John F Fullard, Gabriel E Hoffman, Panagiotis Roussos, Yue Wang, Xusheng Wang, Dalila Pinto, Sidney H Wang, Chunling Zhang, null null, Chao Chen, Yanling Liu
Evaluating performance and applications of sample-wise cell deconvolution methods on human brain transcriptomic data. Science advances 10 (21) (2024)
Miguel Rodriguez de Los Santos, Brian H Kopell, Ariela Buxbaum Grice, Gauri Ganesh, Andy Yang, Pardis Amini, Lora E Liharska, Eric Vornholt, John F Fullard, Pengfei Dong, Eric Park, Sarah Zipkowitz, Deepak A Kaji, Ryan C Thompson, Dongjing Liu, You Jeong Park, Esther Cheng, Kimia Ziafat, Emily Moya, Brian Fennessy, Lillian Wilkins, Hannah Silk, Lisa M Linares, Brendan Sullivan, Vanessa Cohen, Prashant Kota, Claudia Feng, Jessica S Johnson, Marysia-Kolbe Rieder, Joseph Scarpa, Girish Nitin Nadkarni, Minghui Wang, Bin Zhang, Pamela Sklar, Noam D Beckmann, Eric E Schadt, Panagiotis Roussos, Alexander W Charney, Michael S Breen
Author Correction: Divergent landscapes of A-to-I editing in postmortem and living human brain. Nature communications 15 (1) (2024)
Biao Zeng, Jaroslav Bendl, Chengyu Deng, Donghoon Lee, Ruth Misir, Sarah M Reach, Steven P Kleopoulos, Pavan Auluck, Stefano Marenco, David A Lewis, Vahram Haroutunian, Nadav Ahituv, John F Fullard, Gabriel E Hoffman, Panagiotis Roussos
Genetic regulation of cell type-specific chromatin accessibility shapes brain disease etiology. Science (New York, N.Y.) 384 (6698) (2024)
Biao Zeng, Jaroslav Bendl, Chengyu Deng, Donghoon Lee, Ruth Misir, Sarah M Reach, Steven P Kleopoulos, Pavan Auluck, Stefano Marenco, David A Lewis, Vahram Haroutunian, Nadav Ahituv, John F Fullard, Gabriel E Hoffman, Panagiotis Roussos
Genetic regulation of cell type-specific chromatin accessibility shapes brain disease etiology. Science (New York, N.Y.) 384 (6698) (2024)
Rujia Dai, Tianyao Chu, Ming Zhang, Xuan Wang, Alexandre Jourdon, Feinan Wu, Jessica Mariani, Flora M Vaccarino, Donghoon Lee, John F Fullard, Gabriel E Hoffman, Panagiotis Roussos, Yue Wang, Xusheng Wang, Dalila Pinto, Sidney H Wang, Chunling Zhang, null null, Chao Chen, Yanling Liu
Evaluating performance and applications of sample-wise cell deconvolution methods on human brain transcriptomic data. Science advances 10 (21) (2024)
Miguel Rodriguez de Los Santos, Brian H Kopell, Ariela Buxbaum Grice, Gauri Ganesh, Andy Yang, Pardis Amini, Lora E Liharska, Eric Vornholt, John F Fullard, Pengfei Dong, Eric Park, Sarah Zipkowitz, Deepak A Kaji, Ryan C Thompson, Dongjing Liu, You Jeong Park, Esther Cheng, Kimia Ziafat, Emily Moya, Brian Fennessy, Lillian Wilkins, Hannah Silk, Lisa M Linares, Brendan Sullivan, Vanessa Cohen, Prashant Kota, Claudia Feng, Jessica S Johnson, Marysia-Kolbe Rieder, Joseph Scarpa, Girish Nitin Nadkarni, Minghui Wang, Bin Zhang, Pamela Sklar, Noam D Beckmann, Eric E Schadt, Panagiotis Roussos, Alexander W Charney, Michael S Breen
Author Correction: Divergent landscapes of A-to-I editing in postmortem and living human brain. Nature communications 15 (1) (2024)
W Brad Ruzicka, Shahin Mohammadi, John F Fullard, Jose Davila-Velderrain, Sivan Subburaju, Daniel Reed Tso, Makayla Hourihan, Shan Jiang, Hao-Chih Lee, Jaroslav Bendl, null null, Georgios Voloudakis, Vahram Haroutunian, Gabriel E Hoffman, Panagiotis Roussos, Manolis Kellis, null null
Single-cell multi-cohort dissection of the schizophrenia transcriptome. Science (New York, N.Y.) 384 (6698) (2024)
Panagiotis Roussos, Roman Kosoy, John F Fullard, Jaroslav Bendl, Steven Kleopoulos, Zhiping Shao, Stathis Argyriou, Deepika Mathur, James M Vicari, Yixuan Ma, Jack Humphrey, Erica Brophy, Towfique Raj, Pavel Katsel, Georgios Voloudakis, Donghoon Lee, David Bennett, Vahram Haroutunian, Gabriel E Hoffman
Alzheimer's disease transcriptional landscape in ex-vivo human microglia. Research square (2024)
Prashant S Emani, Jason J Liu, Declan Clarke, Matthew Jensen, Jonathan Warrell, Chirag Gupta, Ran Meng, Che Yu Lee, Siwei Xu, Cagatay Dursun, Shaoke Lou, Yuhang Chen, Zhiyuan Chu, Timur Galeev, Ahyeon Hwang, Yunyang Li, Zhengchang Su, Xiao Zhou, null null, Trygve E Bakken, Jaroslav Bendl, Lucy K Bicks, Tanima Chatterjee, Lijun Cheng, Yuyan Cheng, Yi Dai, Ziheng Duan, Mary Flaherty, John F Fullard, Michael Gancz, Diego Garrido-Martín, Sophia C Gaynor-Gillett, Jennifer Grundman, Natalie Hawken, Ella Henry, Gabriel E Hoffman, Ao Huang, Yunzhe Jiang, Ting Jin, Nikolas L Jorstad, Riki Kawaguchi, Saniya Khullar, Jianyin Liu, Junhao Liu, Shuang Liu, Shaojie Ma, Michael Margolis, Samantha Mazariegos, Jill E Moore, Jennifer R Moran, Eric Nguyen, Nishigandha Phalke, Milos Pjanic, Henry E Pratt, Diana Quintero, Ananya S Rajagopalan, Tiernon R Riesenmy, Nicole Shedd, Manman Shi, Megan Spector, Rosemarie Terwilliger, Kyle J Travaglini, Brie Wamsley, Gaoyuan Wang, Yan Xia, Shaohua Xiao, Andrew C Yang, Suchen Zheng, Michael J Gandal, Donghoon Lee, Ed S Lein, Panagiotis Roussos, Nenad Sestan, Nishigandha Phalke, Kevin P White, Hyejung Won, Matthew J Girgenti, Jing Zhang, Daifeng Wang, Daniel H Geschwind, Mark B Gerstein, null null
Single-cell genomics and regulatory networks for 388 human brains. Science (New York, N.Y.) 384 (6698) (2024)
Miguel Rodriguez de Los Santos, Brian H Kopell, Ariela Buxbaum Grice, Gauri Ganesh, Andy Yang, Pardis Amini, Lora E Liharska, Eric Vornholt, John F Fullard, Pengfei Dong, Eric Park, Sarah Zipkowitz, Deepak A Kaji, Ryan C Thompson, Dongjing Liu, You Jeong Park, Esther Cheng, Kimia Ziafat, Emily Moya, Brian Fennessy, Lillian Wilkins, Hannah Silk, Lisa M Linares, Brendan Sullivan, Vanessa Cohen, Prashant Kota, Claudia Feng, Jessica S Johnson, Marysia-Kolbe Rieder, Joseph Scarpa, Girish Nitin Nadkarni, Minghui Wang, Bin Zhang, Pamela Sklar, Noam D Beckmann, Eric E Schadt, Panagiotis Roussos, Alexander W Charney, Michael S Breen
Divergent landscapes of A-to-I editing in postmortem and living human brain. Nature communications 15 (1) (2024)
Prashant S Emani, Jason J Liu, Declan Clarke, Matthew Jensen, Jonathan Warrell, Chirag Gupta, Ran Meng, Che Yu Lee, Siwei Xu, Cagatay Dursun, Shaoke Lou, Yuhang Chen, Zhiyuan Chu, Timur Galeev, Ahyeon Hwang, Yunyang Li, Zhengchang Su, Xiao Zhou, null null, Trygve E Bakken, Jaroslav Bendl, Lucy K Bicks, Tanima Chatterjee, Lijun Cheng, Yuyan Cheng, Yi Dai, Ziheng Duan, Mary Flaherty, John F Fullard, Michael Gancz, Diego Garrido-Martín, Sophia C Gaynor-Gillett, Jennifer Grundman, Natalie Hawken, Ella Henry, Gabriel E Hoffman, Ao Huang, Yunzhe Jiang, Ting Jin, Nikolas L Jorstad, Riki Kawaguchi, Saniya Khullar, Jianyin Liu, Junhao Liu, Shuang Liu, Shaojie Ma, Michael Margolis, Samantha Mazariegos, Jill E Moore, Jennifer R Moran, Eric Nguyen, Nishigandha Phalke, Milos Pjanic, Henry E Pratt, Diana Quintero, Ananya S Rajagopalan, Tiernon R Riesenmy, Nicole Shedd, Manman Shi, Megan Spector, Rosemarie Terwilliger, Kyle J Travaglini, Brie Wamsley, Gaoyuan Wang, Yan Xia, Shaohua Xiao, Andrew C Yang, Suchen Zheng, Michael J Gandal, Donghoon Lee, Ed S Lein, Panagiotis Roussos, Nenad Sestan, Nishigandha Phalke, Kevin P White, Hyejung Won, Matthew J Girgenti, Jing Zhang, Daifeng Wang, Daniel H Geschwind, Mark B Gerstein, null null
Single-cell genomics and regulatory networks for 388 human brains. Science (New York, N.Y.) 384 (6698) (2024)
Prashant S Emani, Jason J Liu, Declan Clarke, Matthew Jensen, Jonathan Warrell, Chirag Gupta, Ran Meng, Che Yu Lee, Siwei Xu, Cagatay Dursun, Shaoke Lou, Yuhang Chen, Zhiyuan Chu, Timur Galeev, Ahyeon Hwang, Yunyang Li, Zhengchang Su, Xiao Zhou, null null, Trygve E Bakken, Jaroslav Bendl, Lucy K Bicks, Tanima Chatterjee, Lijun Cheng, Yuyan Cheng, Yi Dai, Ziheng Duan, Mary Flaherty, John F Fullard, Michael Gancz, Diego Garrido-Martín, Sophia C Gaynor-Gillett, Jennifer Grundman, Natalie Hawken, Ella Henry, Gabriel E Hoffman, Ao Huang, Yunzhe Jiang, Ting Jin, Nikolas L Jorstad, Riki Kawaguchi, Saniya Khullar, Jianyin Liu, Junhao Liu, Shuang Liu, Shaojie Ma, Michael Margolis, Samantha Mazariegos, Jill E Moore, Jennifer R Moran, Eric Nguyen, Nishigandha Phalke, Milos Pjanic, Henry E Pratt, Diana Quintero, Ananya S Rajagopalan, Tiernon R Riesenmy, Nicole Shedd, Manman Shi, Megan Spector, Rosemarie Terwilliger, Kyle J Travaglini, Brie Wamsley, Gaoyuan Wang, Yan Xia, Shaohua Xiao, Andrew C Yang, Suchen Zheng, Michael J Gandal, Donghoon Lee, Ed S Lein, Panagiotis Roussos, Nenad Sestan, Nishigandha Phalke, Kevin P White, Hyejung Won, Matthew J Girgenti, Jing Zhang, Daifeng Wang, Daniel H Geschwind, Mark B Gerstein, null null
Single-cell genomics and regulatory networks for 388 human brains. Science (New York, N.Y.) 384 (6698) (2024)
Prashant S Emani, Jason J Liu, Declan Clarke, Matthew Jensen, Jonathan Warrell, Chirag Gupta, Ran Meng, Che Yu Lee, Siwei Xu, Cagatay Dursun, Shaoke Lou, Yuhang Chen, Zhiyuan Chu, Timur Galeev, Ahyeon Hwang, Yunyang Li, Zhengchang Su, Xiao Zhou, null null, Trygve E Bakken, Jaroslav Bendl, Lucy K Bicks, Tanima Chatterjee, Lijun Cheng, Yuyan Cheng, Yi Dai, Ziheng Duan, Mary Flaherty, John F Fullard, Michael Gancz, Diego Garrido-Martín, Sophia C Gaynor-Gillett, Jennifer Grundman, Natalie Hawken, Ella Henry, Gabriel E Hoffman, Ao Huang, Yunzhe Jiang, Ting Jin, Nikolas L Jorstad, Riki Kawaguchi, Saniya Khullar, Jianyin Liu, Junhao Liu, Shuang Liu, Shaojie Ma, Michael Margolis, Samantha Mazariegos, Jill E Moore, Jennifer R Moran, Eric Nguyen, Nishigandha Phalke, Milos Pjanic, Henry E Pratt, Diana Quintero, Ananya S Rajagopalan, Tiernon R Riesenmy, Nicole Shedd, Manman Shi, Megan Spector, Rosemarie Terwilliger, Kyle J Travaglini, Brie Wamsley, Gaoyuan Wang, Yan Xia, Shaohua Xiao, Andrew C Yang, Suchen Zheng, Michael J Gandal, Donghoon Lee, Ed S Lein, Panagiotis Roussos, Nenad Sestan, Nishigandha Phalke, Kevin P White, Hyejung Won, Matthew J Girgenti, Jing Zhang, Daifeng Wang, Daniel H Geschwind, Mark B Gerstein, null null
Single-cell genomics and regulatory networks for 388 human brains. Science (New York, N.Y.) 384 (6698) (2024)
Chinwe Nwaneshiudu, Kiran Girdhar, Steven P Kleopoulos, John F Fullard, Eduardo Roque Butelman, Muhammad A Parvaz, Rita Z Goldstein, Nelly Alia-Klein, Panagiotis Roussos
Dynamic alterations in gene co-expression networks and gene-transcript associations characterize co-morbidities in cocaine use disorder. bioRxiv : the preprint server for biology (2024)
Chinwe Nwaneshiudu, Kiran Girdhar, Steven P Kleopoulos, John F Fullard, Eduardo Roque Butelman, Muhammad A Parvaz, Rita Z Goldstein, Nelly Alia-Klein, Panagiotis Roussos
Dynamic alterations in gene co-expression networks and gene-transcript associations characterize co-morbidities in cocaine use disorder. bioRxiv : the preprint server for biology (2024)
Prashant S Emani, Jason J Liu, Declan Clarke, Matthew Jensen, Jonathan Warrell, Chirag Gupta, Ran Meng, Che Yu Lee, Siwei Xu, Cagatay Dursun, Shaoke Lou, Yuhang Chen, Zhiyuan Chu, Timur Galeev, Ahyeon Hwang, Yunyang Li, Zhengchang Su, Xiao Zhou, null null, Trygve E Bakken, Jaroslav Bendl, Lucy K Bicks, Tanima Chatterjee, Lijun Cheng, Yuyan Cheng, Yi Dai, Ziheng Duan, Mary Flaherty, John F Fullard, Michael Gancz, Diego Garrido-Martín, Sophia C Gaynor-Gillett, Jennifer Grundman, Natalie Hawken, Ella Henry, Gabriel E Hoffman, Ao Huang, Yunzhe Jiang, Ting Jin, Nikolas L Jorstad, Riki Kawaguchi, Saniya Khullar, Jianyin Liu, Junhao Liu, Shuang Liu, Shaojie Ma, Michael Margolis, Samantha Mazariegos, Jill E Moore, Jennifer R Moran, Eric Nguyen, Nishigandha Phalke, Milos Pjanic, Henry E Pratt, Diana Quintero, Ananya S Rajagopalan, Tiernon R Riesenmy, Nicole Shedd, Manman Shi, Megan Spector, Rosemarie Terwilliger, Kyle J Travaglini, Brie Wamsley, Gaoyuan Wang, Yan Xia, Shaohua Xiao, Andrew C Yang, Suchen Zheng, Michael J Gandal, Donghoon Lee, Ed S Lein, Panagiotis Roussos, Nenad Sestan, Nishigandha Phalke, Kevin P White, Hyejung Won, Matthew J Girgenti, Jing Zhang, Daifeng Wang, Daniel H Geschwind, Mark B Gerstein, null null
Single-cell genomics and regulatory networks for 388 human brains. Science (New York, N.Y.) 384 (6698) (2024)
Miguel Rodriguez de Los Santos, Brian H Kopell, Ariela Buxbaum Grice, Gauri Ganesh, Andy Yang, Pardis Amini, Lora E Liharska, Eric Vornholt, John F Fullard, Pengfei Dong, Eric Park, Sarah Zipkowitz, Deepak A Kaji, Ryan C Thompson, Dongjing Liu, You Jeong Park, Esther Cheng, Kimia Ziafat, Emily Moya, Brian Fennessy, Lillian Wilkins, Hannah Silk, Lisa M Linares, Brendan Sullivan, Vanessa Cohen, Prashant Kota, Claudia Feng, Jessica S Johnson, Marysia-Kolbe Rieder, Joseph Scarpa, Girish Nitin Nadkarni, Minghui Wang, Bin Zhang, Pamela Sklar, Noam D Beckmann, Eric E Schadt, Panagiotis Roussos, Alexander W Charney, Michael S Breen
Divergent landscapes of A-to-I editing in postmortem and living human brain. Nature communications 15 (1) (2024)
Prashant S Emani, Jason J Liu, Declan Clarke, Matthew Jensen, Jonathan Warrell, Chirag Gupta, Ran Meng, Che Yu Lee, Siwei Xu, Cagatay Dursun, Shaoke Lou, Yuhang Chen, Zhiyuan Chu, Timur Galeev, Ahyeon Hwang, Yunyang Li, Zhengchang Su, Xiao Zhou, null null, Trygve E Bakken, Jaroslav Bendl, Lucy K Bicks, Tanima Chatterjee, Lijun Cheng, Yuyan Cheng, Yi Dai, Ziheng Duan, Mary Flaherty, John F Fullard, Michael Gancz, Diego Garrido-Martín, Sophia C Gaynor-Gillett, Jennifer Grundman, Natalie Hawken, Ella Henry, Gabriel E Hoffman, Ao Huang, Yunzhe Jiang, Ting Jin, Nikolas L Jorstad, Riki Kawaguchi, Saniya Khullar, Jianyin Liu, Junhao Liu, Shuang Liu, Shaojie Ma, Michael Margolis, Samantha Mazariegos, Jill E Moore, Jennifer R Moran, Eric Nguyen, Nishigandha Phalke, Milos Pjanic, Henry E Pratt, Diana Quintero, Ananya S Rajagopalan, Tiernon R Riesenmy, Nicole Shedd, Manman Shi, Megan Spector, Rosemarie Terwilliger, Kyle J Travaglini, Brie Wamsley, Gaoyuan Wang, Yan Xia, Shaohua Xiao, Andrew C Yang, Suchen Zheng, Michael J Gandal, Donghoon Lee, Ed S Lein, Panagiotis Roussos, Nenad Sestan, Nishigandha Phalke, Kevin P White, Hyejung Won, Matthew J Girgenti, Jing Zhang, Daifeng Wang, Daniel H Geschwind, Mark B Gerstein, null null
Single-cell genomics and regulatory networks for 388 human brains. Science (New York, N.Y.) 384 (6698) (2024)
Panagiotis Roussos, Yixuan Ma, Kiran Girdhar, Gabriel E Hoffman, John F Fullard, Jaroslav Bendl
Sex differences in brain cell-type specific chromatin accessibility in schizophrenia. Research square (2024)
Gabriel E Hoffman, Donghoon Lee, Jaroslav Bendl, Prashant Fnu, Aram Hong, Clara Casey, Marcela Alvia, Zhiping Shao, Stathis Argyriou, Karen Therrien, Sanan Venkatesh, Georgios Voloudakis, Vahram Haroutunian, John F Fullard, Panagiotis Roussos
Efficient differential expression analysis of large-scale single cell transcriptomics data using dreamlet. Research square (2023)
Pengfei Dong, Georgios Voloudakis, John F Fullard, Gabriel E Hoffman, Panagiotis Roussos
Convergence of the dysregulated regulome in schizophrenia with polygenic risk and evolutionarily constrained enhancers. Molecular psychiatry 29 (3) (2023)
Gabriel E Hoffman, Donghoon Lee, Jaroslav Bendl, Prashant Fnu, Aram Hong, Clara Casey, Marcela Alvia, Zhiping Shao, Stathis Argyriou, Karen Therrien, Sanan Venkatesh, Georgios Voloudakis, Vahram Haroutunian, John F Fullard, Panagiotis Roussos
Efficient differential expression analysis of large-scale single cell transcriptomics data using dreamlet. Research square (2023)
Biao Zeng, Jaroslav Bendl, Chengyu Deng, Donghoon Lee, Ruth Misir, Sarah M Reach, Steven P Kleopoulos, Pavan Auluck, Stefano Marenco, David A Lewis, Vahram Haroutunian, Nadav Ahituv, John F Fullard, Gabriel E Hoffman, Panagiotis Roussos
Genetic regulation of cell-type specific chromatin accessibility shapes the etiology of brain diseases. bioRxiv : the preprint server for biology (2023)
Claire Coleman, Minghui Wang, Erming Wang, Courtney Micallef, Zhiping Shao, James M Vicari, Yuxin Li, Kaiwen Yu, Dongming Cai, Junmin Peng, Vahram Haroutunian, John F Fullard, Jaroslav Bendl, Bin Zhang, Panagiotis Roussos
Multi-omic atlas of the parahippocampal gyrus in Alzheimer's disease. Scientific data 10 (1) (2023)
Gabriel E Hoffman, Donghoon Lee, Jaroslav Bendl, Prashant Fnu, Aram Hong, Clara Casey, Marcela Alvia, Zhiping Shao, Stathis Argyriou, Karen Therrien, Sanan Venkatesh, Georgios Voloudakis, Vahram Haroutunian, John F Fullard, Panagiotis Roussos
Efficient differential expression analysis of large-scale single cell transcriptomics data using dreamlet. bioRxiv : the preprint server for biology (2023)
Pengfei Dong, Georgios Voloudakis, John F Fullard, Gabriel E Hoffman, Panagiotis Roussos
Convergence of the dysregulated regulome in schizophrenia with polygenic risk and evolutionarily constrained enhancers. Molecular psychiatry (2023)
Kaiyi Zhu, Jaroslav Bendl, Samir Rahman, James M Vicari, Claire Coleman, Tereza Clarence, Ovaun Latouche, Nadejda M Tsankova, Aiqun Li, Kristen J Brennand, Donghoon Lee, Guo-Cheng Yuan, John F Fullard, Panagiotis Roussos
Multi-omic profiling of the developing human cerebral cortex at the single-cell level. Science advances 9 (41) (2023)
Biao Zeng, Jaroslav Bendl, Chengyu Deng, Donghoon Lee, Ruth Misir, Sarah M Reach, Steven P Kleopoulos, Pavan Auluck, Stefano Marenco, David A Lewis, Vahram Haroutunian, Nadav Ahituv, John F Fullard, Gabriel E Hoffman, Panagiotis Roussos
Genetic regulation of cell-type specific chromatin accessibility shapes the etiology of brain diseases. bioRxiv : the preprint server for biology (2023)
Pengfei Dong, Georgios Voloudakis, John F Fullard, Gabriel E Hoffman, Panagiotis Roussos
Convergence of the dysregulated regulome in schizophrenia with polygenic risk and evolutionarily constrained enhancers. Molecular psychiatry 29 (3) (2023)
Pengfei Dong, Georgios Voloudakis, John F Fullard, Gabriel E Hoffman, Panagiotis Roussos
Convergence of the dysregulated regulome in schizophrenia with polygenic risk and evolutionarily constrained enhancers. Molecular psychiatry 29 (3) (2023)
Kiran Girdhar, Jaroslav Bendl, Andrew Baumgartner, Karen Therrien, Sanan Venkatesh, Deepika Mathur, Pengfei Dong, Samir Rahman, Steven Kleopoulos, Ruth Misir, Sarah Reach, Pavan Auluck, Stefano Marenco, David Lewis, Vahram Haroutunian, Cory Funk, Georgios Voloudakis, Gabriel E Hoffman, John F Fullard, Panagiotis Roussos
The neuronal chromatin landscape in adult schizophrenia brains is linked to early fetal development. Research square (2023)
Biao Zeng, Jaroslav Bendl, Chengyu Deng, Donghoon Lee, Ruth Misir, Sarah M Reach, Steven P Kleopoulos, Pavan Auluck, Stefano Marenco, David A Lewis, Vahram Haroutunian, Nadav Ahituv, John F Fullard, Gabriel E Hoffman, Panagiotis Roussos
Genetic regulation of cell-type specific chromatin accessibility shapes the etiology of brain diseases. bioRxiv : the preprint server for biology (2023)
Pengfei Dong, Georgios Voloudakis, John F Fullard, Gabriel E Hoffman, Panagiotis Roussos
Convergence of the dysregulated regulome in schizophrenia with polygenic risk and evolutionarily constrained enhancers. Molecular psychiatry (2023)
Pengfei Dong, Georgios Voloudakis, John F Fullard, Gabriel E Hoffman, Panagiotis Roussos
Convergence of the dysregulated regulome in schizophrenia with polygenic risk and evolutionarily constrained enhancers. Molecular psychiatry 29 (3) (2023)
Biao Zeng, Jaroslav Bendl, Chengyu Deng, Donghoon Lee, Ruth Misir, Sarah M Reach, Steven P Kleopoulos, Pavan Auluck, Stefano Marenco, David A Lewis, Vahram Haroutunian, Nadav Ahituv, John F Fullard, Gabriel E Hoffman, Panagiotis Roussos
Genetic regulation of cell-type specific chromatin accessibility shapes the etiology of brain diseases. bioRxiv : the preprint server for biology (2023)
Jack Humphrey, Erica Brophy, Roman Kosoy, Biao Zeng, Elena Coccia, Daniele Mattei, Ashvin Ravi, Anastasia G Efthymiou, Elisa Navarro, Benjamin Z Muller, Gijsje J L J Snijders, Amanda Allan, Alexandra E Münch, Reta Birhanu Kitata, Steven P Kleopoulos, Stathis Argyriou, Zhiping Shao, Nancy J Francoeur, Chia-Feng Tsai, Marina A Gritsenko, Matthew E Monroe, Vanessa L Paurus, Karl K Weitz, Tujin Shi, Robert Sebra, Tao Liu, Lot D de Witte, Alison Mary Goate, David A Bennett, Vahram Haroutunian, Gabriel E Hoffman, John F Fullard, Panagiotis Roussos, Towfique Raj
Long-read RNA-seq atlas of novel microglia isoforms elucidates disease-associated genetic regulation of splicing. medRxiv : the preprint server for health sciences (2023)
Roman Kosoy, John F Fullard, Biao Zeng, Jaroslav Bendl, Pengfei Dong, Samir Rahman, Steven P Kleopoulos, Zhiping Shao, Kiran Girdhar, Jack Humphrey, Katia de Paiva Lopes, Alexander W Charney, Brian H Kopell, Towfique Raj, David Bennett, Christopher P Kellner, Vahram Haroutunian, Gabriel E Hoffman, Panagiotis Roussos
Genetics of the human microglia regulome refines Alzheimer's disease risk loci. Nature genetics 54 (8) (2022)
Nikolaos Konstantinides, Isabel Holguera, Anthony M Rossi, Aristides Escobar, Liébaut Dudragne, Yen-Chung Chen, Thinh Ngoc Tran, Azalia M Martínez Jaimes, Mehmet Neset Özel, Félix Simon, Zhiping Shao, Nadejda M Tsankova, John F Fullard, Uwe Walldorf, Panagiotis Roussos, Claude Desplan
A complete temporal transcription factor series in the fly visual system. Nature 604 (7905) (2022)
Kiran Girdhar, Gabriel E Hoffman, Jaroslav Bendl, Samir Rahman, Pengfei Dong, Will Liao, Mads E Hauberg, Laura Sloofman, Leanne Brown, Olivia Devillers, Bibi S Kassim, Jennifer R Wiseman, Royce Park, Elizabeth Zharovsky, Rivky Jacobov, Elie Flatow, Alexey Kozlenkov, Thomas Gilgenast, Jessica S Johnson, Lizette Couto, Mette A Peters, Jennifer E Phillips-Cremins, Chang-Gyu Hahn, Raquel E Gur, Carol A Tamminga, David A Lewis, Vahram Haroutunian, null null, Stella Dracheva, Barbara K Lipska, Stefano Marenco, Marija Kundakovic, John F Fullard, Yan Jiang, Panagiotis Roussos, Schahram Akbarian
Chromatin domain alterations linked to 3D genome organization in a large cohort of schizophrenia and bipolar disorder brains. Nature neuroscience 25 (4) (2022)
Biao Zeng, Jaroslav Bendl, Roman Kosoy, John F Fullard, Gabriel E Hoffman, Panagiotis Roussos
Multi-ancestry eQTL meta-analysis of human brain identifies candidate causal variants for brain-related traits. Nature genetics 54 (2) (2022)
Bingxin Zhao, Tengfei Li, Stephen M Smith, Di Xiong, Xifeng Wang, Yue Yang, Tianyou Luo, Ziliang Zhu, Yue Shan, Nana Matoba, Quan Sun, Yuchen Yang, Mads Engel Hauberg, Jaroslav Bendl, John F Fullard, Panagiotis Roussos, Weili Lin, Yun Li, Jason L Stein, Hongtu Zhu
Common variants contribute to intrinsic human brain functional networks. Nature genetics 54 (4) (2022)
Dongxin Liu, Amy Zinski, Akanksha Mishra, Haneul Noh, Gun-Hoo Park, Yiren Qin, Oshoname Olorife, James M Park, Chiderah P Abani, Joy S Park, Janice Fung, Farah Sawaqed, Joseph T Coyle, Eli Stahl, Jaroslav Bendl, John F Fullard, Panagiotis Roussos, Xiaolei Zhang, Patric K Stanton, Changhong Yin, Weihua Huang, Hae-Young Kim, Hyejung Won, Jun-Hyeong Cho, Sangmi Chung
Impact of schizophrenia GWAS loci converge onto distinct pathways in cortical interneurons vs glutamatergic neurons during development. Molecular psychiatry 27 (10) (2022)
Georgios Voloudakis, James M Vicari, Sanan Venkatesh, Gabriel E Hoffman, Kristina Rehbach, Wen Zhang, Noam D Beckmann, Christina A Higgins, Stathis Argyriou, Shan Jiang, Daisy Hoagland, Lina Gao, André Corvelo, Kelly Cho, Kyung Min Lee, Jiantao Bian, Jennifer S Lee, Sudha K Iyengar, Shiuh-Wen Luoh, Schahram Akbarian, Robert Striker, Themistocles L Assimes, Eric E Schadt, Julie A Lynch, Miriam Merad, Benjamin R tenOever, Alexander W Charney, null null, null null, Kristen J Brennand, John F Fullard, Panagiotis Roussos
A translational genomics approach identifies IL10RB as the top candidate gene target for COVID-19 susceptibility. NPJ genomic medicine 7 (1) (2022)
Pengfei Dong, Gabriel E Hoffman, Pasha Apontes, Jaroslav Bendl, Samir Rahman, Michael B Fernando, Biao Zeng, James M Vicari, Wen Zhang, Kiran Girdhar, Kayla G Retallick-Townsley, Ruth Misir, null null, Kristen J Brennand, Vahram Haroutunian, Georgios Voloudakis, John F Fullard, Panagiotis Roussos
Population-level variation in enhancer expression identifies disease mechanisms in the human brain. Nature genetics 54 (10) (2022)
Jaroslav Bendl, Mads Engel Hauberg, Kiran Girdhar, Eunju Im, James M Vicari, Samir Rahman, Michael B Fernando, Kayla G Retallick-Townsley, Pengfei Dong, Ruth Misir, Steven P Kleopoulos, Sarah M Reach, Pasha Apontes, Biao Zeng, Wen Zhang, Georgios Voloudakis, Kristen J Brennand, Ralph A Nixon, Vahram Haroutunian, Gabriel E Hoffman, John F Fullard, Panagiotis Roussos
The three-dimensional landscape of cortical chromatin accessibility in Alzheimer's disease. Nature neuroscience 25 (10) (2022)
Georgios Voloudakis, Gabriel E Hoffman, Sanan Venkatesh, Kyung Min Lee, Kristina Rehbach, James M Vicari, Wen Zhang, Noam D Beckmann, Shan Jiang, Daisy A Hoagland, Jiantao Bian, Lina Gao, André Corvelo, Kelly Cho, Jennifer S Lee, Sudha K Iyengar, Shiuh-Wen Luoh, Schahram Akbarian, Robert Striker, Themistocles L Assimes, Eric E Schadt, Miriam Merad, Benjamin R tenOever, Alexander W Charney, null null, null null, Kristen J Brennand, Julie A Lynch, John F Fullard, Panagiotis Roussos
IL10RB as a key regulator of COVID-19 host susceptibility and severity. medRxiv : the preprint server for health sciences (2021)
Bingxin Zhao, Tengfei Li, Yue Yang, Xifeng Wang, Tianyou Luo, Yue Shan, Ziliang Zhu, Di Xiong, Mads Engel Hauberg, Jaroslav Bendl, John F Fullard, Panagiotis Roussos, Yun Li, Jason L Stein, Hongtu Zhu
Common genetic variation influencing human white matter microstructure. Science (New York, N.Y.) 372 (6548) (2021)
Srivathsa S Magadi, Chrysanthi Voutyraki, Gerasimos Anagnostopoulos, Evanthia Zacharioudaki, Ioanna K Poutakidou, Christina Efraimoglou, Margarita Stapountzi, Vasiliki Theodorou, Christoforos Nikolaou, Konstantinos A Koumbanakis, John F Fullard, Christos Delidakis
Dissecting Hes-centred transcriptional networks in neural stem cell maintenance and tumorigenesis in Drosophila. Development (Cambridge, England) 147 (22) (2020)
John F Fullard, Mads Engel Hauberg, Jaroslav Bendl, Gabor Egervari, Maria-Daniela Cirnaru, Sarah M Reach, Jan Motl, Michelle E Ehrlich, Yasmin L Hurd, Panagiotis Roussos
An atlas of chromatin accessibility in the adult human brain. Genome research 28 (8) (2018)