Michiaki Hamada

Loop profile Researcher Name Resolver ID ResearcherID ORCID

Publication Activity (10 Years)

Years Active: 2019-2024
Publications (10 Years): 28

Top Venues

NAR genomics and bioinformatics

Nature computational science

Nature methods

Bioinformatics advances

Waseda University

Tokyo Institute of Technology (PHD)

This page only lists publications with an associated author ORCID identifier.

Affiliation History

Waseda University Apr 01 2018

Japan

Professor :: Faculty of Science and Engineering

National Institute of Advanced Industrial Science and Technology Nov 01 2016

Japan

Team Leader :: Computational Bio Big-Data Open Innovation Laboratory

Waseda University Apr 01 2014 - Mar 31 2018

Japan

Associate Professor :: Department of Electrical Engineering and Bioscience

University of Tokyo Oct 01 2010 - Mar 31 2014

Japan

Associate Professor

Mizuho Joho Soken Kabushiki Kaisha Apr 01 2002 - Sep 30 2010

Japan

Consultant

Education History

Tokyo Institute of Technology Oct 01 2005 - Mar 31 2009

Japan

PHD

Tohoku University Apr 01 1996 - Mar 31 2002

Japan

MSC :: Mathematical Institute

Publications

Shunsuke Sumi, Michiaki Hamada, Hirohide Saito
Deep generative design of RNA family sequences. Nature methods (2024)
Shunsuke Sumi, Michiaki Hamada, Hirohide Saito
Deep generative design of RNA family sequences. Nature methods 21 (3) (2024)
Shunsuke Sumi, Michiaki Hamada, Hirohide Saito
Deep generative design of RNA family sequences. Nature methods 21 (3) (2024)
Shunsuke Sumi, Michiaki Hamada, Hirohide Saito
Deep generative design of RNA family sequences. Nature methods 21 (3) (2024)
Kotaro Sekine, Masahiro Onoguchi, Michiaki Hamada
Transposons contribute to the acquisition of cell type-specific cis-elements in the brain. Communications biology 6 (1) (2023)
Segewkal H Heruye, Jered Myslinski, Chao Zeng, Amy Zollman, Shinichi Makino, Azuma Nanamatsu, Quoseena Mir, Sarath Chandra Janga, Emma H Doud, Michael T Eadon, Bernhard Maier, Michiaki Hamada, Tuan M Tran, Pierre C Dagher, Takashi Hato
Inflammation primes the kidney for recovery by activating AZIN1 A-to-I editing. bioRxiv : the preprint server for biology (2023)
Chao Zeng, Takeshi Chujo, Tetsuro Hirose, Michiaki Hamada
Landscape of semi-extractable RNAs across five human cell lines. Nucleic acids research (2023)
Natsuki Iwano, Tatsuo Adachi, Kazuteru Aoki, Yoshikazu Nakamura, Michiaki Hamada
Generative aptamer discovery using RaptGen. Nature computational science 2 (6) (2022)
Keisuke Yamada, Michiaki Hamada
Prediction of RNA-protein interactions using a nucleotide language model. Bioinformatics advances 2 (1) (2022)
Keisuke Yamada, Michiaki Hamada
Prediction of RNA-protein interactions using a nucleotide language model. Bioinformatics advances 2 (1) (2022)
Yu Ono, Kenta Katayama, Tomoki Onuma, Kento Kubo, Hayato Tsuyuzaki, Michiaki Hamada, Masamitsu Sato
Structure-based screening for functional non-coding RNAs in fission yeast identifies a factor repressing untimely initiation of sexual differentiation. Nucleic acids research 50 (19) (2022)
Tsukasa Fukunaga, Michiaki Hamada
LinAliFold and CentroidLinAliFold: fast RNA consensus secondary structure prediction for aligned sequences using beam search methods. Bioinformatics advances 2 (1) (2022)
Natsuki Iwano, Tatsuo Adachi, Kazuteru Aoki, Yoshikazu Nakamura, Michiaki Hamada
Generative aptamer discovery using RaptGen. Nature computational science 2 (6) (2022)
Tsukasa Fukunaga, Michiaki Hamada
LinAliFold and CentroidLinAliFold: fast RNA consensus secondary structure prediction for aligned sequences using beam search methods. Bioinformatics advances 2 (1) (2022)
Yukiteru Ono, Michiaki Hamada, Kiyoshi Asai
PBSIM3: a simulator for all types of PacBio and ONT long reads. NAR genomics and bioinformatics 4 (4) (2022)
Natsuki Iwano, Tatsuo Adachi, Kazuteru Aoki, Yoshikazu Nakamura, Michiaki Hamada
Generative aptamer discovery using RaptGen. Nature computational science 2 (6) (2022)
Natsuki Iwano, Tatsuo Adachi, Kazuteru Aoki, Yoshikazu Nakamura, Michiaki Hamada
Generative aptamer discovery using RaptGen. Nature computational science 2 (6) (2022)
Masahiro Onoguchi, Chao Zeng, Ayako Matsumaru, Michiaki Hamada
Binding patterns of RNA-binding proteins to repeat-derived RNA sequences reveal putative functional RNA elements. NAR genomics and bioinformatics 3 (3) (2021)
Satoshi Takahashi, Rintaro Noro, Masahiro Seike, Chao Zeng, Masaru Matsumoto, Akiko Yoshikawa, Shinji Nakamichi, Teppei Sugano, Mariko Hirao, Kuniko Matsuda, Michiaki Hamada, Akihiko Gemma
Long Non-Coding RNA CRNDE Is Involved in Resistance to EGFR Tyrosine Kinase Inhibitor in EGFR-Mutant Lung Cancer via eIF4A3/MUC1/EGFR Signaling. International journal of molecular sciences 22 (8) (2021)
Taro Matsutani, Michiaki Hamada
Clone decomposition based on mutation signatures provides novel insights into mutational processes. NAR genomics and bioinformatics 3 (4) (2021)
Hitoshi Iuchi, Michiaki Hamada
Jonckheere-Terpstra-Kendall-based non-parametric analysis of temporal differential gene expression. NAR genomics and bioinformatics 3 (1) (2021)
Chao Zeng, Masahiro Onoguchi, Michiaki Hamada
Association analysis of repetitive elements and R-loop formation across species. Mobile DNA 12 (1) (2021)
Yukiteru Ono, Kiyoshi Asai, Michiaki Hamada
PBSIM2: a simulator for long-read sequencers with a novel generative model of quality scores. Bioinformatics (Oxford, England) 37 (5) (2021)
Taro Matsutani, Michiaki Hamada
Parallelized Latent Dirichlet Allocation Provides a Novel Interpretability of Mutation Signatures in Cancer Genomes. Genes 11 (10) (2020)
Shion Hosoda, Suguru Nishijima, Tsukasa Fukunaga, Masahira Hattori, Michiaki Hamada
Revealing the microbial assemblage structure in the human gut microbiome using latent Dirichlet allocation. Microbiome 8 (1) (2020)
Yiqian Zhang, Michiaki Hamada
MoAIMS: efficient software for detection of enriched regions of MeRIP-Seq. BMC bioinformatics 21 (1) (2020)
Chao Zeng, Michiaki Hamada
RNA-Seq Analysis Reveals Localization-Associated Alternative Splicing across 13 Cell Lines. Genes 11 (7) (2020)
Yuko Matsumura, Yasuhiko Ito, Yoshihiro Mezawa, Kaidiliayi Sulidan, Yataro Daigo, Toru Hiraga, Kaoru Mogushi, Nadila Wali, Hiromu Suzuki, Takumi Itoh, Yohei Miyagi, Tomoyuki Yokose, Satoru Shimizu, Atsushi Takano, Yasuhisa Terao, Harumi Saeki, Masayuki Ozawa, Masaaki Abe, Satoru Takeda, Ko Okumura, Sonoko Habu, Okio Hino, Kazuyoshi Takeda, Michiaki Hamada, Akira Orimo
Stromal fibroblasts induce metastatic tumor cell clusters via epithelial-mesenchymal plasticity. Life science alliance 2 (4) (2019)

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Publication Activity (10 Years)

Top Topics

Top Venues

Michiaki Hamada