Mingyao Li

Publication Activity (10 Years)

Years Active: 2020-2024
Publications (10 Years): 27

Top Topics

High Throughput Sequencing

Top Venues

Nature communications

Nature genetics

Nature medicine

This page only lists publications with an associated author ORCID identifier.

Publications

Guangchun Han, Ansam Sinjab, Zahraa Rahal, Anne M Lynch, Warapen Treekitkarnmongkol, Yuejiang Liu, Alejandra G Serrano, Jiping Feng, Ke Liang, Khaja Khan, Wei Lu, Sharia D Hernandez, Yunhe Liu, Xuanye Cao, Enyu Dai, Guangsheng Pei, Jian Hu, Camille Abaya, Lorena Isabel Gomez-Bolanos, Fuduan Peng, Minyue Chen, Edwin Roger Parra Cuentes, Cascone Tina, Boris Sepesi, Seyed Javad Moghaddam, Paul A Scheet, Marcelo Vailati Negrão, John Victor Heymach, Mingyao Li, Steven M Dubinett, Christopher S Stevenson, Avrum E Spira, Junya Fujimoto, Luisa Maren Solis Soto, Ignacio I Wistuba, Jichao Chen, Linghua Wang, Humam Kadara
An atlas of epithelial cell states and plasticity in lung adenocarcinoma. Nature 627 (8004) (2024)
Kyle Coleman, Amelia Schroeder, Mingyao Li
Unlocking the power of spatial omics with AI. Nature methods 21 (8) (2024)
Guangchun Han, Ansam Sinjab, Zahraa Rahal, Anne M Lynch, Warapen Treekitkarnmongkol, Yuejiang Liu, Alejandra G Serrano, Jiping Feng, Ke Liang, Khaja Khan, Wei Lu, Sharia D Hernandez, Yunhe Liu, Xuanye Cao, Enyu Dai, Guangsheng Pei, Jian Hu, Camille Abaya, Lorena Isabel Gomez-Bolanos, Fuduan Peng, Minyue Chen, Edwin Roger Parra Cuentes, Cascone Tina, Boris Sepesi, Seyed Javad Moghaddam, Paul A Scheet, Marcelo Vailati Negrão, John Victor Heymach, Mingyao Li, Steven M Dubinett, Christopher S Stevenson, Avrum E Spira, Junya Fujimoto, Luisa Maren Solis Soto, Ignacio I Wistuba, Jichao Chen, Linghua Wang, Humam Kadara
An atlas of epithelial cell states and plasticity in lung adenocarcinoma. Nature 627 (8004) (2024)
Guangchun Han, Ansam Sinjab, Zahraa Rahal, Anne M Lynch, Warapen Treekitkarnmongkol, Yuejiang Liu, Alejandra G Serrano, Jiping Feng, Ke Liang, Khaja Khan, Wei Lu, Sharia D Hernandez, Yunhe Liu, Xuanye Cao, Enyu Dai, Guangsheng Pei, Jian Hu, Camille Abaya, Lorena Isabel Gomez-Bolanos, Fuduan Peng, Minyue Chen, Edwin Roger Parra Cuentes, Cascone Tina, Boris Sepesi, Seyed Javad Moghaddam, Paul A Scheet, Marcelo Vailati Negrão, John Victor Heymach, Mingyao Li, Steven M Dubinett, Christopher S Stevenson, Avrum E Spira, Junya Fujimoto, Luisa Maren Solis Soto, Ignacio I Wistuba, Jichao Chen, Linghua Wang, Humam Kadara
An atlas of epithelial cell states and plasticity in lung adenocarcinoma. Nature 627 (8004) (2024)
Guangchun Han, Ansam Sinjab, Zahraa Rahal, Anne M Lynch, Warapen Treekitkarnmongkol, Yuejiang Liu, Alejandra G Serrano, Jiping Feng, Ke Liang, Khaja Khan, Wei Lu, Sharia D Hernandez, Yunhe Liu, Xuanye Cao, Enyu Dai, Guangsheng Pei, Jian Hu, Camille Abaya, Lorena Isabel Gomez-Bolanos, Fuduan Peng, Minyue Chen, Edwin Roger Parra Cuentes, Cascone Tina, Boris Sepesi, Seyed Javad Moghaddam, Paul A Scheet, Marcelo Vailati Negrão, John Victor Heymach, Mingyao Li, Steven M Dubinett, Christopher S Stevenson, Avrum E Spira, Junya Fujimoto, Luisa Maren Solis Soto, Ignacio I Wistuba, Jichao Chen, Linghua Wang, Humam Kadara
An atlas of epithelial cell states and plasticity in lung adenocarcinoma. Nature (2024)
Guangchun Han, Ansam Sinjab, Zahraa Rahal, Anne M Lynch, Warapen Treekitkarnmongkol, Yuejiang Liu, Alejandra G Serrano, Jiping Feng, Ke Liang, Khaja Khan, Wei Lu, Sharia D Hernandez, Yunhe Liu, Xuanye Cao, Enyu Dai, Guangsheng Pei, Jian Hu, Camille Abaya, Lorena Isabel Gomez-Bolanos, Fuduan Peng, Minyue Chen, Edwin Roger Parra Cuentes, Cascone Tina, Boris Sepesi, Seyed Javad Moghaddam, Paul A Scheet, Marcelo Vailati Negrão, John Victor Heymach, Mingyao Li, Steven M Dubinett, Christopher S Stevenson, Avrum E Spira, Junya Fujimoto, Luisa Maren Solis Soto, Ignacio I Wistuba, Jichao Chen, Linghua Wang, Humam Kadara
An atlas of epithelial cell states and plasticity in lung adenocarcinoma. Nature 627 (8004) (2024)
Guangchun Han, Ansam Sinjab, Zahraa Rahal, Anne M Lynch, Warapen Treekitkarnmongkol, Yuejiang Liu, Alejandra G Serrano, Jiping Feng, Ke Liang, Khaja Khan, Wei Lu, Sharia D Hernandez, Yunhe Liu, Xuanye Cao, Enyu Dai, Guangsheng Pei, Jian Hu, Camille Abaya, Lorena Isabel Gomez-Bolanos, Fuduan Peng, Minyue Chen, Edwin Roger Parra Cuentes, Cascone Tina, Boris Sepesi, Seyed Javad Moghaddam, Paul A Scheet, Marcelo Vailati Negrão, John Victor Heymach, Mingyao Li, Steven M Dubinett, Christopher S Stevenson, Avrum E Spira, Junya Fujimoto, Luisa Maren Solis Soto, Ignacio I Wistuba, Jichao Chen, Linghua Wang, Humam Kadara
An atlas of epithelial cell states and plasticity in lung adenocarcinoma. Nature (2024)
Guangchun Han, Ansam Sinjab, Zahraa Rahal, Anne M Lynch, Warapen Treekitkarnmongkol, Yuejiang Liu, Alejandra G Serrano, Jiping Feng, Ke Liang, Khaja Khan, Wei Lu, Sharia D Hernandez, Yunhe Liu, Xuanye Cao, Enyu Dai, Guangsheng Pei, Jian Hu, Camille Abaya, Lorena Isabel Gomez-Bolanos, Fuduan Peng, Minyue Chen, Edwin Roger Parra Cuentes, Cascone Tina, Boris Sepesi, Seyed Javad Moghaddam, Paul A Scheet, Marcelo Vailati Negrão, John Victor Heymach, Mingyao Li, Steven M Dubinett, Christopher S Stevenson, Avrum E Spira, Junya Fujimoto, Luisa Maren Solis Soto, Ignacio I Wistuba, Jichao Chen, Linghua Wang, Humam Kadara
Author Correction: An atlas of epithelial cell states and plasticity in lung adenocarcinoma. Nature (2024)
Guangchun Han, Ansam Sinjab, Zahraa Rahal, Anne M Lynch, Warapen Treekitkarnmongkol, Yuejiang Liu, Alejandra G Serrano, Jiping Feng, Ke Liang, Khaja Khan, Wei Lu, Sharia D Hernandez, Yunhe Liu, Xuanye Cao, Enyu Dai, Guangsheng Pei, Jian Hu, Camille Abaya, Lorena Isabel Gomez-Bolanos, Fuduan Peng, Minyue Chen, Edwin Roger Parra Cuentes, Cascone Tina, Boris Sepesi, Seyed Javad Moghaddam, Paul A Scheet, Marcelo Vailati Negrão, John Victor Heymach, Mingyao Li, Steven M Dubinett, Christopher S Stevenson, Avrum E Spira, Junya Fujimoto, Luisa Maren Solis Soto, Ignacio I Wistuba, Jichao Chen, Linghua Wang, Humam Kadara
An atlas of epithelial cell states and plasticity in lung adenocarcinoma. Nature 627 (8004) (2024)
Guangchun Han, Ansam Sinjab, Zahraa Rahal, Anne M Lynch, Warapen Treekitkarnmongkol, Yuejiang Liu, Alejandra G Serrano, Jiping Feng, Ke Liang, Khaja Khan, Wei Lu, Sharia D Hernandez, Yunhe Liu, Xuanye Cao, Enyu Dai, Guangsheng Pei, Jian Hu, Camille Abaya, Lorena Isabel Gomez-Bolanos, Fuduan Peng, Minyue Chen, Edwin Roger Parra Cuentes, Cascone Tina, Boris Sepesi, Seyed Javad Moghaddam, Paul A Scheet, Marcelo Vailati Negrão, John Victor Heymach, Mingyao Li, Steven M Dubinett, Christopher S Stevenson, Avrum E Spira, Junya Fujimoto, Luisa Maren Solis Soto, Ignacio I Wistuba, Jichao Chen, Linghua Wang, Humam Kadara
An atlas of epithelial cell states and plasticity in lung adenocarcinoma. Nature (2024)
Guangchun Han, Ansam Sinjab, Zahraa Rahal, Anne M Lynch, Warapen Treekitkarnmongkol, Yuejiang Liu, Alejandra G Serrano, Jiping Feng, Ke Liang, Khaja Khan, Wei Lu, Sharia D Hernandez, Yunhe Liu, Xuanye Cao, Enyu Dai, Guangsheng Pei, Jian Hu, Camille Abaya, Lorena Isabel Gomez-Bolanos, Fuduan Peng, Minyue Chen, Edwin Roger Parra Cuentes, Cascone Tina, Boris Sepesi, Seyed Javad Moghaddam, Paul A Scheet, Marcelo Vailati Negrão, John Victor Heymach, Mingyao Li, Steven M Dubinett, Christopher S Stevenson, Avrum E Spira, Junya Fujimoto, Luisa Maren Solis Soto, Ignacio I Wistuba, Jichao Chen, Linghua Wang, Humam Kadara
Author Correction: An atlas of epithelial cell states and plasticity in lung adenocarcinoma. Nature (2024)
Guangchun Han, Ansam Sinjab, Zahraa Rahal, Anne M Lynch, Warapen Treekitkarnmongkol, Yuejiang Liu, Alejandra G Serrano, Jiping Feng, Ke Liang, Khaja Khan, Wei Lu, Sharia D Hernandez, Yunhe Liu, Xuanye Cao, Enyu Dai, Guangsheng Pei, Jian Hu, Camille Abaya, Lorena Isabel Gomez-Bolanos, Fuduan Peng, Minyue Chen, Edwin Roger Parra Cuentes, Cascone Tina, Boris Sepesi, Seyed Javad Moghaddam, Paul A Scheet, Marcelo Vailati Negrão, John Victor Heymach, Mingyao Li, Steven M Dubinett, Christopher S Stevenson, Avrum E Spira, Junya Fujimoto, Luisa Maren Solis Soto, Ignacio I Wistuba, Jichao Chen, Linghua Wang, Humam Kadara
An atlas of epithelial cell states and plasticity in lung adenocarcinoma. Nature (2024)
Kyle Coleman, Amelia Schroeder, Mingyao Li
Unlocking the power of spatial omics with AI. Nature methods 21 (8) (2024)
Amin Abedini, Jonathan Levinsohn, Konstantin A Klötzer, Bernhard Dumoulin, Ziyuan Ma, Julia Frederick, Poonam Dhillon, Michael S Balzer, Rojesh Shrestha, Hongbo Liu, Steven Vitale, Andi M Bergeson, Kishor Devalaraja-Narashimha, Paola Grandi, Tanmoy Bhattacharyya, Erding Hu, Steven S Pullen, Carine M Boustany-Kari, Paolo Guarnieri, Anil Karihaloo, Daniel Traum, Hanying Yan, Kyle Coleman, Matthew Palmer, Lea Sarov-Blat, Lori Morton, Christopher A Hunter, Klaus H Kaestner, Mingyao Li, Katalin Suszták
Single-cell multi-omic and spatial profiling of human kidneys implicates the fibrotic microenvironment in kidney disease progression. Nature genetics 56 (8) (2024)
Guangchun Han, Ansam Sinjab, Zahraa Rahal, Anne M Lynch, Warapen Treekitkarnmongkol, Yuejiang Liu, Alejandra G Serrano, Jiping Feng, Ke Liang, Khaja Khan, Wei Lu, Sharia D Hernandez, Yunhe Liu, Xuanye Cao, Enyu Dai, Guangsheng Pei, Jian Hu, Camille Abaya, Lorena Isabel Gomez-Bolanos, Fuduan Peng, Minyue Chen, Edwin Roger Parra Cuentes, Cascone Tina, Boris Sepesi, Seyed Javad Moghaddam, Paul A Scheet, Marcelo Vailati Negrão, John Victor Heymach, Mingyao Li, Steven M Dubinett, Christopher S Stevenson, Avrum E Spira, Junya Fujimoto, Luisa Maren Solis Soto, Ignacio I Wistuba, Jichao Chen, Linghua Wang, Humam Kadara
An atlas of epithelial cell states and plasticity in lung adenocarcinoma. Nature (2024)
Amin Abedini, Jonathan Levinsohn, Konstantin A Klötzer, Bernhard Dumoulin, Ziyuan Ma, Julia Frederick, Poonam Dhillon, Michael S Balzer, Rojesh Shrestha, Hongbo Liu, Steven Vitale, Andi M Bergeson, Kishor Devalaraja-Narashimha, Paola Grandi, Tanmoy Bhattacharyya, Erding Hu, Steven S Pullen, Carine M Boustany-Kari, Paolo Guarnieri, Anil Karihaloo, Daniel Traum, Hanying Yan, Kyle Coleman, Matthew Palmer, Lea Sarov-Blat, Lori Morton, Christopher A Hunter, Klaus H Kaestner, Mingyao Li, Katalin Suszták
Single-cell multi-omic and spatial profiling of human kidneys implicates the fibrotic microenvironment in kidney disease progression. Nature genetics (2024)
Guangchun Han, Ansam Sinjab, Zahraa Rahal, Anne M Lynch, Warapen Treekitkarnmongkol, Yuejiang Liu, Alejandra G Serrano, Jiping Feng, Ke Liang, Khaja Khan, Wei Lu, Sharia D Hernandez, Yunhe Liu, Xuanye Cao, Enyu Dai, Guangsheng Pei, Jian Hu, Camille Abaya, Lorena Isabel Gomez-Bolanos, Fuduan Peng, Minyue Chen, Edwin Roger Parra Cuentes, Cascone Tina, Boris Sepesi, Seyed Javad Moghaddam, Paul A Scheet, Marcelo Vailati Negrão, John Victor Heymach, Mingyao Li, Steven M Dubinett, Christopher S Stevenson, Avrum E Spira, Junya Fujimoto, Luisa Maren Solis Soto, Ignacio I Wistuba, Jichao Chen, Linghua Wang, Humam Kadara
An atlas of epithelial cell states and plasticity in lung adenocarcinoma. Nature 627 (8004) (2024)
Qihuang Zhang, Shunzhou Jiang, Amelia Schroeder, Jian Hu, Kejie Li, Baohong Zhang, David Dai, Edward B Lee, Rui Xiao, Mingyao Li
Leveraging spatial transcriptomics data to recover cell locations in single-cell RNA-seq with CeLEry. Nature communications 14 (1) (2023)
Michelle Y Y Lee, Mingyao Li
Integration of multi-modal single-cell data. Nature biotechnology (2023)
Yanshuo Chu, Enyu Dai, Yating Li, Guangchun Han, Guangsheng Pei, Davis R Ingram, Krupa Thakkar, Jiang-Jiang Qin, Minghao Dang, Xiuning Li, Can Hu, Qing Deng, Ansam Sinjab, Pravesh Gupta, Ruiping Wang, Dapeng Hao, Fuduan Peng, Xinmiao Yan, Yunhe Liu, Shumei Song, Shaojun Zhang, John Victor Heymach, Alexandre Reuben, Yasir Y Elamin, Melissa P Pizzi, Yang Lu, Rossana Lazcano, Jian Hu, Mingyao Li, Michael A Curran, P Andrew Futreal, Anirban Maitra, Amir A Jazaeri, Jaffer A Ajani, Charles Swanton, Xiang-Dong Cheng, Hussein A Abbas, Maura Gillison, Krishna P Bhat, Alexander J F Lazar, Michael R Green, Kevin Litchfield, Humam Kadara, Cassian Yee, Linghua Wang
Pan-cancer T cell atlas links a cellular stress response state to immunotherapy resistance. Nature medicine (2023)
Oxana Dmitrieva-Posocco, Andrea C Wong, Patrick Lundgren, Aleksandra M Golos, Hélène C Descamps, Lenka Dohnalová, Zvi Cramer, Yuhua Tian, Brian Yueh, Onur Eskiocak, Gabor Egervari, Yemin Lan, Jinping Liu, Jiaxin Fan, Jihee Kim, Bhoomi Madhu, Kai Markus Schneider, Svetlana Khoziainova, Natalia Andreeva, Qiaohong Wang, Ning Li, Emma E Furth, Will Bailis, Judith R Kelsen, Kathryn E Hamilton, Klaus H Kaestner, Shelley L Berger, Jonathan A Epstein, Rajan Jain, Mingyao Li, Semir Beyaz, Christopher J Lengner, Bryson W Katona, Sergei I Grivennikov, Christoph A Thaiss, Maayan Levy
β-Hydroxybutyrate suppresses colorectal cancer. Nature 605 (7908) (2022)
Benjamin J Auerbach, Garret A FitzGerald, Mingyao Li
Tempo: an unsupervised Bayesian algorithm for circadian phase inference in single-cell transcriptomics. Nature communications 13 (1) (2022)
John Pluta, Louise C Pyle, Kevin T Nead, Rona Wilf, Mingyao Li, Nandita Mitra, Benita Weathers, Kurt D'Andrea, Kristian Almstrup, Lynn Anson-Cartwright, Javier Benitez, Christopher D Brown, Stephen J Chanock, Chu Chen, Victoria K Cortessis, Alberto Ferlin, Carlo Foresta, Marija Gamulin, Jourik A Gietema, Chiara Grasso, Mark H Greene, Tom Grotmol, Robert J Hamilton, Trine B Haugen, Russ Hauser, Michelle A T Hildebrandt, Matthew E Johnson, Robert Karlsson, Lambertus A L M Kiemeney, Davor Lessel, Ragnhild A Lothe, Jennifer T Loud, Chey Loveday, Paloma Martin-Gimeno, Coby Meijer, Jeremie Nsengimana, David I Quinn, Thorunn Rafnar, Shweta Ramdas, Lorenzo Richiardi, Rolf I Skotheim, Kari Stefansson, Clare Turnbull, David J Vaughn, Fredrik Wiklund, Xifeng Wu, Daphne Yang, Tongzhang Zheng, Andrew D Wells, Struan F A Grant, Ewa Rajpert-De Meyts, Stephen M Schwartz, D Timothy Timothy Bishop, Katherine A McGlynn, Peter A Kanetsky, Katherine L Nathanson, null null
Identification of 22 susceptibility loci associated with testicular germ cell tumors. Nature communications 12 (1) (2021)
Xin Sheng, Yuting Guan, Ziyuan Ma, Junnan Wu, Hongbo Liu, Chengxiang Qiu, Steven Vitale, Zhen Miao, Matthew J Seasock, Matthew Palmer, Myung K Shin, Kevin L Duffin, Steven S Pullen, Todd L Edwards, Jacklyn N Hellwege, Adriana M Hung, Mingyao Li, Benjamin F Voight, Thomas M Coffman, Christopher D Brown, Katalin Suszták
Mapping the genetic architecture of human traits to cell types in the kidney identifies mechanisms of disease and potential treatments. Nature genetics 53 (9) (2021)
Zhen Miao, Michael S Balzer, Ziyuan Ma, Hongbo Liu, Junnan Wu, Shreshtha Rojesh, Tamas Aranyi, Amy Kwan, Ayano Kondo, Marco Pontoglio, Junhyong Kim, Mingyao Li, Klaus H Kaestner, Katalin Suszták
Single cell regulatory landscape of the mouse kidney highlights cellular differentiation programs and disease targets. Nature communications 12 (1) (2021)
Ruiping Wang, Minghao Dang, Kazuto Harada, Guangchun Han, Fang Wang, Melissa Pool Pizzi, Meina Zhao, Ghia Tatlonghari, Shaojun Zhang, Dapeng Hao, Yang Lu, Shuangtao Zhao, Brian D Badgwell, Mariela Blum Murphy, Namita Shanbhag, Jeannelyn S Estrella, Sinchita Roy-Chowdhuri, Ahmed Adel Fouad Abdelhakeem, Yuanxin Wang, Guang Peng, Samir M Hanash, George Adrian Calin, Xingzhi Song, Yanshuo Chu, Jianhua Zhang, Mingyao Li, Ken Chen, Alexander J F Lazar, P Andrew Futreal, Shumei Song, Jaffer A Ajani, Linghua Wang
Single-cell dissection of intratumoral heterogeneity and lineage diversity in metastatic gastric adenocarcinoma. Nature medicine 27 (1) (2021)
Yu Hu, Kai Wang, Mingyao Li
Detecting differential alternative splicing events in scRNA-seq with or without Unique Molecular Identifiers. PLoS computational biology 16 (6) (2020)