Shelley L Berger (Shelley Berger)

Scopus Author ID ORCID

Publication Activity (10 Years)

Years Active: 2018-2024
Publications (10 Years): 36

Top Venues

Nature

Nature communications

Nature aging

Science advances

University of Pennsylvania

University of Michigan (BSC)

This page only lists publications with an associated author ORCID identifier.

Affiliation History

University of Pennsylvania

United States

Director :: Epigenetics Institute

University of Pennsylvania

United States

“Penn Integrates Knowledge” University Professor

University of Pennsylvania

United States

Daniel S. Och University Professor :: Penn, Departments of Cell & Developmental Biology; Genetics; Biology

University of Pennsylvania

United States

Founding Director :: Epigenetics Program

Wistar Institute

United States

Hilary Koprowski Professor :: Gene Expression and Regulation Program

Wistar Institute

United States

Assistant Program Leader :: Gene Expression and Regulation Program

University of Pennsylvania

United States

Adjunct Professor :: Department of Genetics

University of Pennsylvania

United States

Adjunct Professor :: Department of Biology

Wistar Institute

United States

Associate Professor

Wistar Institute

United States

Assistant Professor

Education History

University of Michigan

United States

BSC

Publications

Chen Wang, Hideki Tanizawa, Connor Hill, Aaron Havas, Qiang Zhang, Liping Liao, Xue Hao, Xue Lei, Lu Wang, Hao Nie, Yuan Qi, Bin Tian, Alessandro Gardini, Andrew V Kossenkov, Aaron R Goldman, Shelley L Berger, Ken-Ichi Noma, Peter D Adams, Rugang Zhang
METTL3-mediated chromatin contacts promote stress granule phase separation through metabolic reprogramming during senescence. Nature communications 15 (1) (2024)
Chen Wang, Hideki Tanizawa, Connor Hill, Aaron Havas, Qiang Zhang, Liping Liao, Xue Hao, Xue Lei, Lu Wang, Hao Nie, Yuan Qi, Bin Tian, Alessandro Gardini, Andrew V Kossenkov, Aaron R Goldman, Shelley L Berger, Ken-Ichi Noma, Peter D Adams, Rugang Zhang
METTL3-mediated chromatin contacts promote stress granule phase separation through metabolic reprogramming during senescence. Nature communications 15 (1) (2024)
Chen Wang, Hideki Tanizawa, Connor Hill, Aaron Havas, Qiang Zhang, Liping Liao, Xue Hao, Xue Lei, Lu Wang, Hao Nie, Yuan Qi, Bin Tian, Alessandro Gardini, Andrew V Kossenkov, Aaron R Goldman, Shelley L Berger, Ken-Ichi Noma, Peter D Adams, Rugang Zhang
METTL3-mediated chromatin contacts promote stress granule phase separation through metabolic reprogramming during senescence. Nature communications 15 (1) (2024)
Daniel C Xu, Hanna Sas-Nowosielska, Greg Donahue, Hua Huang, Naemeh Pourshafie, Charly R Good, Shelley L Berger
Histone acetylation in an Alzheimer's disease cell model promotes homeostatic amyloid-reducing pathways. Acta neuropathologica communications 12 (1) (2024)
Daniel C Xu, Hanna Sas-Nowosielska, Greg Donahue, Hua Huang, Naemeh Pourshafie, Charly R Good, Shelley L Berger
Histone acetylation in an Alzheimer's disease cell model promotes homeostatic amyloid-reducing pathways. Acta neuropathologica communications 12 (1) (2024)
Nirmalya Dasgupta, Xue Lei, Christina Huan Shi, Rouven Arnold, Marcos G Teneche, Karl N Miller, Adarsh Rajesh, Andrew Davis, Valesca Anschau, Alexandre R Campos, Rebecca Gilson, Aaron Havas, Shanshan Yin, Zong Ming Chua, Tianhui Liu, Jessica M Proulx, Michael Alcaraz, Mohammed Iqbal Rather, Josue Baeza, David C. Schultz, Kevin Y Yip, Shelley L Berger, Peter D Adams
Histone chaperone HIRA, Promyelocytic Leukemia (PML) protein and p62/SQSTM1 coordinate to regulate inflammation during cell senescence. bioRxiv : the preprint server for biology (2024)
Nirmalya Dasgupta, Xue Lei, Christina Huan Shi, Rouven Arnold, Marcos G Teneche, Karl N Miller, Adarsh Rajesh, Andrew Davis, Valesca Anschau, Alexandre R Campos, Rebecca Gilson, Aaron Havas, Shanshan Yin, Zong Ming Chua, Tianhui Liu, Jessica M Proulx, Michael Alcaraz, Mohammed Iqbal Rather, Josue Baeza, David C. Schultz, Kevin Y Yip, Shelley L Berger, Peter D Adams
Histone chaperone HIRA, Promyelocytic Leukemia (PML) protein and p62/SQSTM1 coordinate to regulate inflammation during cell senescence. bioRxiv : the preprint server for biology (2024)
Daniel C Xu, Hanna Sas-Nowosielska, Greg Donahue, Hua Huang, Naemeh Pourshafie, Charly R Good, Shelley L Berger
Histone acetylation in an Alzheimer's disease cell model promotes homeostatic amyloid-reducing pathways. Acta neuropathologica communications 12 (1) (2024)
Chen Wang, Hideki Tanizawa, Connor Hill, Aaron Havas, Qiang Zhang, Liping Liao, Xue Hao, Xue Lei, Lu Wang, Hao Nie, Yuan Qi, Bin Tian, Alessandro Gardini, Andrew V Kossenkov, Aaron R Goldman, Shelley L Berger, Ken-Ichi Noma, Peter D Adams, Rugang Zhang
METTL3-mediated chromatin contacts promote stress granule phase separation through metabolic reprogramming during senescence. Nature communications 15 (1) (2024)
Chen Wang, Hideki Tanizawa, Connor Hill, Aaron Havas, Qiang Zhang, Liping Liao, Xue Hao, Xue Lei, Lu Wang, Hao Nie, Yuan Qi, Bin Tian, Alessandro Gardini, Andrew V Kossenkov, Aaron R Goldman, Shelley L Berger, Ken-Ichi Noma, Peter D Adams, Rugang Zhang
METTL3-mediated chromatin contacts promote stress granule phase separation through metabolic reprogramming during senescence. Nature communications 15 (1) (2024)
John Kee, Samuel Thudium, David M Renner, Karl Glastad, Katherine Palozola, Zhen Zhang, Yize Henry Li, Yemin Lan, Joseph Cesare, Andrey Poleshko, Anna A Kiseleva, Rachel Truitt, Fabian L Cardenas-Diaz, Xianwen Zhang, Xuping Xie, Darrell N Kotton, Konstantinos D Alysandratos, Johnathan A Epstein, Pei-Yong Shi, Wenli Yang, Edward Morrisey, Benjamin A Garcia, Shelley L Berger, Susan R Weiss, Erica Korb
Publisher Correction: SARS-CoV-2 disrupts host epigenetic regulation via histone mimicry. Nature (2023)
Alejandro Ocampo, Greg Donahue, Catherine Li, Gabor Egervari, Na Yang, Yemin Lan, Neil Alistair Robertson, Parisha P Shah, Erik Kerkhoven, David C. Schultz, Peter D Adams, Shelley L Berger
Spurious intragenic transcription is a feature of mammalian cellular senescence and tissue aging. Nature aging 3 (4) (2023)
John Kee, Samuel Thudium, David M Renner, Karl Glastad, Katherine Palozola, Zhen Zhang, Yize Henry Li, Yemin Lan, Joseph Cesare, Andrey Poleshko, Anna A Kiseleva, Rachel Truitt, Fabian L Cardenas-Diaz, Xianwen Zhang, Xuping Xie, Darrell N Kotton, Konstantinos D Alysandratos, Jonathan A Epstein, Pei-Yong Shi, Wenli Yang, Edward Morrisey, Benjamin A Garcia, Shelley L Berger, Susan R Weiss, Erica Korb
Author Correction: SARS-CoV-2 disrupts host epigenetic regulation via histone mimicry. Nature (2023)
John Kee, Samuel Thudium, David M Renner, Karl Glastad, Katherine Palozola, Zhen Zhang, Yize Henry Li, Yemin Lan, Joseph Cesare, Andrey Poleshko, Anna A Kiseleva, Rachel Truitt, Fabian L Cardenas-Diaz, Xianwen Zhang, Xuping Xie, Darrell N Kotton, Konstantinos D Alysandratos, Jonathan A Epstein, Pei-Yong Shi, Wenli Yang, Edward Morrisey, Benjamin A Garcia, Shelley L Berger, Susan R Weiss, Erica Korb
Author Correction: SARS-CoV-2 disrupts host epigenetic regulation via histone mimicry. Nature (2023)
Sierra M Collins, Katherine A Alexander, Stefan Lundh, Alexander J Dimitri, Zhen Zhang, Charly R Good, Joseph A Fraietta, Shelley L Berger
TOX2 coordinates with TET2 to positively regulate central memory differentiation in human CAR T cells. Science advances 9 (29) (2023)
In-Young Jung, Robert L Bartoszek, Andrew J Rech, Sierra M Collins, Soon-Keat Ooi, Erik F Williams, Caitlin R Hopkins, Vivek Narayan, Naomi B Haas, Noelle V Frey, Elizabeth O Hexner, Donald L Siegel, Gabriela Plesa, David L Porter, Vito Adrian Cantu, John K Everett, Sonia Guedan, Shelley L Berger, Frederic D Bushman, Friederike Herbst, Joseph A Fraietta
Type I Interferon Signaling via the EGR2 Transcriptional Regulator Potentiates CAR T cell-intrinsic Dysfunction. Cancer discovery (2023)
Karl M Glastad, Julian Roessler, Janko Gospocic, Roberto Bonasio, Shelley L Berger
Long ant life span is maintained by a unique heat shock factor. Genes & development (2023)
John Kee, Samuel Thudium, David M Renner, Karl Glastad, Katherine Palozola, Zhen Zhang, Yize Henry Li, Yemin Lan, Joseph Cesare, Andrey Poleshko, Anna A Kiseleva, Rachel Truitt, Fabian L Cardenas-Diaz, Xianwen Zhang, Xuping Xie, Darrell N Kotton, Konstantinos D Alysandratos, Johnathan A Epstein, Pei-Yong Shi, Wenli Yang, Edward Morrisey, Benjamin A Garcia, Shelley L Berger, Susan R Weiss, Erica Korb
Publisher Correction: SARS-CoV-2 disrupts host epigenetic regulation via histone mimicry. Nature (2023)
Alejandro Ocampo, Greg Donahue, Catherine Li, Gabor Egervari, Na Yang, Yemin Lan, Neil Alistair Robertson, Parisha P Shah, Erik Kerkhoven, David C. Schultz, Peter D Adams, Shelley L Berger
Spurious intragenic transcription is a feature of mammalian cellular senescence and tissue aging. Nature aging 3 (4) (2023)
Alejandro Ocampo, Greg Donahue, Catherine Li, Gabor Egervari, Na Yang, Yemin Lan, Neil Alistair Robertson, Parisha P Shah, Erik Kerkhoven, David C. Schultz, Peter D Adams, Shelley L Berger
Spurious intragenic transcription is a feature of mammalian cellular senescence and tissue aging. Nature aging 3 (4) (2023)
Alejandro Ocampo, Greg Donahue, Catherine Li, Gabor Egervari, Na Yang, Yemin Lan, Neil Alistair Robertson, Parisha P Shah, Erik Kerkhoven, David C. Schultz, Peter D Adams, Shelley L Berger
Spurious intragenic transcription is a feature of mammalian cellular senescence and tissue aging. Nature aging 3 (4) (2023)
Alejandro Ocampo, Greg Donahue, Catherine Li, Gabor Egervari, Na Yang, Yemin Lan, Neil Alistair Robertson, Parisha P Shah, Erik Kerkhoven, David C. Schultz, Peter D Adams, Shelley L Berger
Spurious intragenic transcription is a feature of mammalian cellular senescence and tissue aging. Nature aging 3 (4) (2023)
Oxana Dmitrieva-Posocco, Andrea C Wong, Patrick Lundgren, Aleksandra M Golos, Hélène C Descamps, Lenka Dohnalová, Zvi Cramer, Yuhua Tian, Brian Yueh, Onur Eskiocak, Gabor Egervari, Yemin Lan, Jinping Liu, Jiaxin Fan, Jihee Kim, Bhoomi Madhu, Kai Markus Schneider, Svetlana Khoziainova, Natalia Andreeva, Qiaohong Wang, Ning Li, Emma E Furth, Will Bailis, Judith R Kelsen, Kathryn E Hamilton, Klaus H Kaestner, Shelley L Berger, Jonathan A Epstein, Rajan Jain, Mingyao Li, Semir Beyaz, Christopher J Lengner, Bryson W Katona, Sergei I Grivennikov, Christoph A Thaiss, Maayan Levy
β-Hydroxybutyrate suppresses colorectal cancer. Nature 605 (7908) (2022)
John Kee, Samuel Thudium, David M Renner, Karl Glastad, Katherine Palozola, Zhen Zhang, Yize Henry Li, Yemin Lan, Joseph Cesare, Andrey Poleshko, Anna A Kiseleva, Rachel Truitt, Fabian L Cardenas-Diaz, Xianwen Zhang, Xuping Xie, Darrell N Kotton, Konstantinos D Alysandratos, Johnathan A Epstein, Pei-Yong Shi, Wenli Yang, Edward Morrisey, Benjamin A Garcia, Shelley L Berger, Susan R Weiss, Erica Korb
SARS-CoV-2 disrupts host epigenetic regulation via histone mimicry. Nature 610 (7931) (2022)
In-Young Jung, Vivek Narayan, Sierra M Collins, Andrew J Rech, Robert Bartoszek, Gwanui Hong, Megan M Davis, Jun Xu, Alina C Boesteanu, Julie S Barber-Rotenberg, Gabriela Plesa, Simon F Lacey, Julie K Jadlowsky, Donald L Siegel, Dana M Hammill, Park F Cho-Park, Shelley L Berger, Naomi B Haas, Joseph A Fraietta
BLIMP1 and NR4A3 transcription factors reciprocally regulate antitumor CAR T cell stemness and exhaustion. Science translational medicine 14 (670) (2022)
Desi C Alexander, Tanya Corman, Mariel Mendoza, Andrew Glass, Tal Belity, Ranran Wu, Rianne R Campbell, Joseph Han, Ashley A Keiser, Jeffrey Winkler, Marcelo A Wood, Thomas Kim, Benjamin A Garcia, Hagit Cohen, Philipp Mews, Gabor Egervari, Shelley L Berger
Targeting acetyl-CoA metabolism attenuates the formation of fear memories through reduced activity-dependent histone acetylation. Proceedings of the National Academy of Sciences of the United States of America 119 (32) (2022)
Mariel Mendoza, Gabor Egervari, Simone Sidoli, Greg Donahue, Desi C Alexander, Alejandro Ocampo, Benjamin A Garcia, Shelley L Berger
Enzymatic transfer of acetate on histones from lysine reservoir sites to lysine activating sites. Science advances 8 (3) (2022)
Xue Hao, Yusuke Shiromoto, Masayuki Sakurai, Martina Towers, Qiang Zhang, Shuai Wu, Aaron Havas, Lu Wang, Shelley L Berger, Peter D Adams, Bin Tian, Kazuko Nishikura, Andrew V Kossenkov, Pingyu Liu, Rugang Zhang
ADAR1 downregulation by autophagy drives senescence independently of RNA editing by enhancing p16 INK4a levels. Nature cell biology 24 (8) (2022)
Karl M Glastad, Linyang Ju, Shelley L Berger
Tramtrack acts during late pupal development to direct ant caste identity. PLoS genetics 17 (9) (2021)
Lu Wang, Caiyue Xu, Terje Johansen, Shelley L Berger, Zhixun Dou
SIRT1 - a new mammalian substrate of nuclear autophagy. Autophagy 17 (2) (2020)
Caiyue Xu, Lu Wang, Parinaz Fozouni, Gry Evjen, Vemika Chandra, Jing Jiang, Congcong Lu, Michael C Nicastri, Corey Bretz, Jeffrey D Winkler, Ravi Amaravadi, Benjamin A Garcia, Peter D Adams, Melanie Ott, Wei Tong, Terje Johansen, Zhixun Dou, Shelley L Berger
SIRT1 is downregulated by autophagy in senescence and ageing. Nature cell biology 22 (10) (2020)
Raffaella Nativio, Yemin Lan, Greg Donahue, Simone Sidoli, Amit Berson, Ananth R Srinivasan, Oksana Shcherbakova, Alexandre Amlie-Wolf, Ji Nie, Xiaolong Cui, Chuan He, Li-San Wang, Benjamin A Garcia, John Q Trojanowski, Nancy M Bonini, Shelley L Berger
An integrated multi-omics approach identifies epigenetic alterations associated with Alzheimer's disease. Nature genetics 52 (10) (2020)
Xiaomei Hu, Emily J Shields, Janko Gospocic, Karl M Glastad, Puttachai Ratchasanmuang, Shelley L Berger, Arjun Raj, Shawn C Little, Roberto Bonasio
Social reprogramming in ants induces longevity-associated glia remodeling. Science advances 6 (34) (2020)
Allison N Catizone, Charly Ryan Good, Katherine A Alexander, Shelley L Berger, Morgan A Sammons
Comparison of genotoxic versus nongenotoxic stabilization of p53 provides insight into parallel stress-responsive transcriptional networks. Cell cycle (Georgetown, Tex.) 18 (8) (2019)
Enrique Lin-Shiao, Yemin Lan, Julia Welzenbach, Katherine A Alexander, Zhen Zhang, Michael Knapp, Elisabeth Mangold, Morgan A Sammons, Kerstin U Ludwig, Shelley L Berger
p63 establishes epithelial enhancers at critical craniofacial development genes. Science advances 5 (5) (2019)
Raffaella Nativio, Greg Donahue, Amit Berson, Yemin Lan, Alexandre Amlie-Wolf, Ferit Tuzer, Jon B Toledo, Sager J Gosai, Brian D Gregory, Claudio Torres, John Q Trojanowski, Li-San Wang, F Bradley Johnson, Nancy M Bonini, Shelley L Berger
Dysregulation of the epigenetic landscape of normal aging in Alzheimer's disease. Nature neuroscience 21 (4) (2018)

Shelley L Berger.css-eqlu8i{font-size:small;padding-left:4px;} (Shelley Berger)

Publication Activity (10 Years)

Top Topics

Top Venues

Shelley L Berger (Shelley Berger)