Nicholas J Eagles (Nick Eagles)

Publication Activity (10 Years)

Years Active: 2021-2024
Publications (10 Years): 38

Top Topics

Genome Wide Association

Gene Expression

Prefrontal Cortex

Top Venues

bioRxiv : the preprint server for biology

Nature neuroscience

Science (New York, N.Y.)

Biological imaging

This page only lists publications with an associated author ORCID identifier.

Publications

Louise A Huuki-Myers, Abby Spangler, Nicholas J Eagles, Kelsey D Montgomery, Sang Ho Kwon, Bo-Yi Guo, Melissa Grant-Peters, Heena R Divecha, Madhavi Tippani, Chaichontat Sriworarat, Annie B Nguyen, Prashanthi Ravichandran, Matthew N Tran, Arta Seyedian, null null, Thomas M Hyde, Joel E Kleinman, Alexis J Battle, Stephanie Cerceo Page, Mina Ryten, Stephanie C Hicks, Keri Martinowich, Leonardo Collado-Torres, Kristen R Maynard, null null
A data-driven single-cell and spatial transcriptomic map of the human prefrontal cortex. Science (New York, N.Y.) 384 (6698) (2024)
Louise A Huuki-Myers, Kelsey D Montgomery, Sang Ho Kwon, Sophia Cinquemani, Nicholas J Eagles, Daianna Gonzalez-Padilla, Sean K Maden, Joel E Kleinman, Thomas M Hyde, Stephanie C Hicks, Kristen R Maynard, Leonardo Collado-Torres
Benchmark of cellular deconvolution methods using a multi-assay reference dataset from postmortem human prefrontal cortex. bioRxiv : the preprint server for biology (2024)
Louise A Huuki-Myers, Kelsey D Montgomery, Sang Ho Kwon, Sophia Cinquemani, Sean K Maden, Nicholas J Eagles, Joel E Kleinman, Thomas M Hyde, Stephanie C Hicks, Kristen R Maynard, Leonardo Collado-Torres
Benchmark of cellular deconvolution methods using a multi-assay reference dataset from postmortem human prefrontal cortex. bioRxiv : the preprint server for biology (2024)
Nicholas J Eagles, Svitlana V Bach, Madhavi Tippani, Prashanthi Ravichandran, Yufeng Du, Ryan A Miller, Thomas M Hyde, Stephanie Cerceo Page, Keri Martinowich, Leonardo Collado-Torres
Integrating gene expression and imaging data across Visium capture areas with visiumStitched. bioRxiv : the preprint server for biology (2024)
Kynon J M Benjamin, Qiang Chen, Nicholas J Eagles, Louise A Huuki-Myers, Leonardo Collado-Torres, Joshua M Stolz, Geo Pertea, Joo-Heon Shin, Apua C M Paquola, Thomas M Hyde, Joel E Kleinman, Andrew E Jaffe, Shizhong Han, Daniel R Weinberger
Analysis of gene expression in the postmortem brain of neurotypical Black Americans reveals contributions of genetic ancestry. Nature neuroscience (2024)
Nicholas J Eagles, Svitlana V Bach, Madhavi Tippani, Prashanthi Ravichandran, Yufeng Du, Ryan A Miller, Thomas M Hyde, Stephanie Cerceo Page, Keri Martinowich, Leonardo Collado-Torres
Integrating gene expression and imaging data across Visium capture areas with visiumStitched. bioRxiv : the preprint server for biology (2024)
Nicholas J Eagles, Svitlana V Bach, Madhavi Tippani, Prashanthi Ravichandran, Yufeng Du, Ryan A Miller, Thomas M Hyde, Stephanie Cerceo Page, Keri Martinowich, Leonardo Collado-Torres
Integrating gene expression and imaging data across Visium capture areas with visiumStitched. bioRxiv : the preprint server for biology (2024)
Kynon J M Benjamin, Qiang Chen, Nicholas J Eagles, Louise A Huuki-Myers, Leonardo Collado-Torres, Joshua M Stolz, Geo Pertea, Joo-Heon Shin, Apua C M Paquola, Thomas M Hyde, Joel E Kleinman, Andrew E Jaffe, Shizhong Han, Daniel R Weinberger
Analysis of gene expression in the postmortem brain of neurotypical Black Americans reveals contributions of genetic ancestry. Nature neuroscience 27 (6) (2024)
Louise A Huuki-Myers, Kelsey D Montgomery, Sang Ho Kwon, Sophia Cinquemani, Nicholas J Eagles, Daianna Gonzalez-Padilla, Sean K Maden, Joel E Kleinman, Thomas M Hyde, Stephanie C Hicks, Kristen R Maynard, Leonardo Collado-Torres
Benchmark of cellular deconvolution methods using a multi-assay reference dataset from postmortem human prefrontal cortex. bioRxiv : the preprint server for biology (2024)
Kynon J M Benjamin, Qiang Chen, Nicholas J Eagles, Louise A Huuki-Myers, Leonardo Collado-Torres, Joshua M Stolz, Geo Pertea, Joo-Heon Shin, Apua C M Paquola, Thomas M Hyde, Joel E Kleinman, Andrew E Jaffe, Shizhong Han, Daniel R Weinberger
Analysis of gene expression in the postmortem brain of neurotypical Black Americans reveals contributions of genetic ancestry. Nature neuroscience 27 (6) (2024)
Erik D Nelson, Madhavi Tippani, Anthony D Ramnauth, Heena R Divecha, Ryan A Miller, Nicholas J Eagles, Elizabeth A Pattie, Sang Ho Kwon, Svitlana V Bach, Uma M Kaipa, Jianing Yao, Joel E Kleinman, Leonardo Collado-Torres, Shizhong Han, Kristen R Maynard, Thomas M Hyde, Keri Martinowich, Stephanie Cerceo Page, Stephanie C Hicks
An integrated single-nucleus and spatial transcriptomics atlas reveals the molecular landscape of the human hippocampus. bioRxiv : the preprint server for biology (2024)
Louise A Huuki-Myers, Kelsey D Montgomery, Sang Ho Kwon, Sophia Cinquemani, Nicholas J Eagles, Daianna Gonzalez-Padilla, Sean K Maden, Joel E Kleinman, Thomas M Hyde, Stephanie C Hicks, Kristen R Maynard, Leonardo Collado-Torres
Benchmark of cellular deconvolution methods using a multi-assay reference dataset from postmortem human prefrontal cortex. bioRxiv : the preprint server for biology (2024)
Louise A Huuki-Myers, Abby Spangler, Nicholas J Eagles, Kelsey D Montgomery, Sang Ho Kwon, Bo-Yi Guo, Melissa Grant-Peters, Heena R Divecha, Madhavi Tippani, Chaichontat Sriworarat, Annie B Nguyen, Prashanthi Ravichandran, Matthew N Tran, Arta Seyedian, null null, Thomas M Hyde, Joel E Kleinman, Alexis J Battle, Stephanie Cerceo Page, Mina Ryten, Stephanie C Hicks, Keri Martinowich, Leonardo Collado-Torres, Kristen R Maynard, null null
A data-driven single-cell and spatial transcriptomic map of the human prefrontal cortex. Science (New York, N.Y.) 384 (6698) (2024)
Louise A Huuki-Myers, Kelsey D Montgomery, Sang Ho Kwon, Sophia Cinquemani, Sean K Maden, Nicholas J Eagles, Joel E Kleinman, Thomas M Hyde, Stephanie C Hicks, Kristen R Maynard, Leonardo Collado-Torres
Benchmark of cellular deconvolution methods using a multi-assay reference dataset from postmortem human prefrontal cortex. bioRxiv : the preprint server for biology (2024)
Louise A Huuki-Myers, Abby Spangler, Nicholas J Eagles, Kelsey D Montgomery, Sang Ho Kwon, Bo-Yi Guo, Melissa Grant-Peters, Heena R Divecha, Madhavi Tippani, Chaichontat Sriworarat, Annie B Nguyen, Prashanthi Ravichandran, Matthew N Tran, Arta Seyedian, null null, Thomas M Hyde, Joel E Kleinman, Alexis J Battle, Stephanie Cerceo Page, Mina Ryten, Stephanie C Hicks, Keri Martinowich, Leonardo Collado-Torres, Kristen R Maynard, null null
A data-driven single-cell and spatial transcriptomic map of the human prefrontal cortex. Science (New York, N.Y.) 384 (6698) (2024)
Kynon J M Benjamin, Qiang Chen, Nicholas J Eagles, Louise A Huuki-Myers, Leonardo Collado-Torres, Joshua M Stolz, Geo Pertea, Joo-Heon Shin, Apua C M Paquola, Thomas M Hyde, Joel E Kleinman, Andrew E Jaffe, Shizhong Han, Daniel R Weinberger
Analysis of gene expression in the postmortem brain of neurotypical Black Americans reveals contributions of genetic ancestry. Nature neuroscience 27 (6) (2024)
Ege A Yalcinbas, Bukola Ajanaku, Erik D Nelson, Renee Garcia-Flores, Nicholas J Eagles, Kelsey D Montgomery, Joshua M Stolz, Joshua Wu, Heena R Divecha, Atharv Chandra, Rahul A Bharadwaj, Svitlana V Bach, Anandita Rajpurohit, Ran Tao, Geo Pertea, Joo-Heon Shin, Joel E Kleinman, Thomas M Hyde, Daniel R Weinberger, Louise A Huuki-Myers, Leonardo Collado-Torres, Kristen R Maynard
Transcriptomic analysis of the human habenula in schizophrenia. bioRxiv : the preprint server for biology (2024)
Erik D Nelson, Madhavi Tippani, Anthony D Ramnauth, Heena R Divecha, Ryan A Miller, Nicholas J Eagles, Elizabeth A Pattie, Sang Ho Kwon, Svitlana V Bach, Uma M Kaipa, Jianing Yao, Joel E Kleinman, Leonardo Collado-Torres, Shizhong Han, Kristen R Maynard, Thomas M Hyde, Keri Martinowich, Stephanie Cerceo Page, Stephanie C Hicks
An integrated single-nucleus and spatial transcriptomics atlas reveals the molecular landscape of the human hippocampus. bioRxiv : the preprint server for biology (2024)
Kynon J M Benjamin, Qiang Chen, Nicholas J Eagles, Louise A Huuki-Myers, Leonardo Collado-Torres, Joshua M Stolz, Geo Pertea, Joo-Heon Shin, Apua C M Paquola, Thomas M Hyde, Joel E Kleinman, Andrew E Jaffe, Shizhong Han, Daniel R Weinberger
Analysis of gene expression in the postmortem brain of neurotypical Black Americans reveals contributions of genetic ancestry. Nature neuroscience 27 (6) (2024)
Kynon J M Benjamin, Qiang Chen, Nicholas J Eagles, Louise A Huuki-Myers, Leonardo Collado-Torres, Joshua M Stolz, Geo Pertea, Joo-Heon Shin, Apua C M Paquola, Thomas M Hyde, Joel E Kleinman, Andrew E Jaffe, Shizhong Han, Daniel R Weinberger
Analysis of gene expression in the postmortem brain of neurotypical Black Americans reveals contributions of genetic ancestry. Nature neuroscience 27 (6) (2024)
Louise A Huuki-Myers, Abby Spangler, Nicholas J Eagles, Kelsey D Montgomery, Sang Ho Kwon, Bo-Yi Guo, Melissa Grant-Peters, Heena R Divecha, Madhavi Tippani, Chaichontat Sriworarat, Annie B Nguyen, Prashanthi Ravichandran, Matthew N Tran, Arta Seyedian, null null, Thomas M Hyde, Joel E Kleinman, Alexis J Battle, Stephanie Cerceo Page, Mina Ryten, Stephanie C Hicks, Keri Martinowich, Leonardo Collado-Torres, Kristen R Maynard, null null
A data-driven single-cell and spatial transcriptomic map of the human prefrontal cortex. Science (New York, N.Y.) 384 (6698) (2024)
Louise A Huuki-Myers, Kelsey D Montgomery, Sang Ho Kwon, Sophia Cinquemani, Nicholas J Eagles, Daianna Gonzalez-Padilla, Sean K Maden, Joel E Kleinman, Thomas M Hyde, Stephanie C Hicks, Kristen R Maynard, Leonardo Collado-Torres
Benchmark of cellular deconvolution methods using a multi-assay reference dataset from postmortem human prefrontal cortex. bioRxiv : the preprint server for biology (2024)
Kynon J M Benjamin, Qiang Chen, Nicholas J Eagles, Louise A Huuki-Myers, Leonardo Collado-Torres, Joshua M Stolz, Geo Pertea, Joo-Heon Shin, Apua C M Paquola, Thomas M Hyde, Joel E Kleinman, Andrew E Jaffe, Shizhong Han, Daniel R Weinberger
Analysis of gene expression in the postmortem brain of neurotypical Black Americans reveals contributions of genetic ancestry. Nature neuroscience (2024)
Louise A Huuki-Myers, Kelsey D Montgomery, Sang Ho Kwon, Sophia Cinquemani, Nicholas J Eagles, Daianna Gonzalez-Padilla, Sean K Maden, Joel E Kleinman, Thomas M Hyde, Stephanie C Hicks, Kristen R Maynard, Leonardo Collado-Torres
Benchmark of cellular deconvolution methods using a multi-assay reference dataset from postmortem human prefrontal cortex. bioRxiv : the preprint server for biology (2024)
Chaichontat Sriworarat, Annie B Nguyen, Nicholas J Eagles, Leonardo Collado-Torres, Keri Martinowich, Kristen R Maynard, Stephanie C Hicks
Performant web-based interactive visualization tool for spatially-resolved transcriptomics experiments. Biological imaging 3 (2023)
Chaichontat Sriworarat, Annie B Nguyen, Nicholas J Eagles, Leonardo Collado-Torres, Keri Martinowich, Kristen R Maynard, Stephanie C Hicks
Performant web-based interactive visualization tool for spatially-resolved transcriptomics experiments. Biological imaging 3 (2023)
Kynon J M Benjamin, Qiang Chen, Nicholas J Eagles, Louise A Huuki-Myers, Leonardo Collado-Torres, Joshua M Stolz, Joo Heon Shin, Apua C M Paquola, Thomas M Hyde, Joel E Kleinman, Andrew E Jaffe, Shizhong Han, Daniel R Weinberger
Genetic and environmental contributions to ancestry differences in gene expression in the human brain. bioRxiv : the preprint server for biology (2023)
Chaichontat Sriworarat, Annie B Nguyen, Nicholas J Eagles, Leonardo Collado-Torres, Keri Martinowich, Kristen R Maynard, Stephanie C Hicks
Performant web-based interactive visualization tool for spatially-resolved transcriptomics experiments. Biological imaging 3 (2023)
Chaichontat Sriworarat, Annie B Nguyen, Nicholas J Eagles, Leonardo Collado-Torres, Keri Martinowich, Kristen R Maynard, Stephanie C Hicks
Performant web-based interactive visualization tool for spatially-resolved transcriptomics experiments. bioRxiv : the preprint server for biology (2023)
Louise A Huuki-Myers, Abby Spangler, Nicholas J Eagles, Kelsey D Montgomery, Sang Ho Kwon, Bo-Yi Guo, Melissa Grant-Peters, Heena R Divecha, Madhavi Tippani, Chaichontat Sriworarat, Annie B Nguyen, Prashanthi Ravichandran, Matthew Nguyen Tran, Arta Seyedian, null null, Thomas M Hyde, Joel E Kleinman, Alexis J Battle, Stephanie Cerceo Page, Mina Ryten, Stephanie C Hicks, Keri Martinowich, Leonardo Collado-Torres, Kristen R Maynard
Integrated single cell and unsupervised spatial transcriptomic analysis defines molecular anatomy of the human dorsolateral prefrontal cortex. bioRxiv : the preprint server for biology (2023)
Chaichontat Sriworarat, Annie B Nguyen, Nicholas J Eagles, Leonardo Collado-Torres, Keri Martinowich, Kristen R Maynard, Stephanie C Hicks
Performant web-based interactive visualization tool for spatially-resolved transcriptomics experiments. bioRxiv : the preprint server for biology (2023)
Louise A Huuki-Myers, Abby Spangler, Nicholas J Eagles, Kelsey D Montgomery, Sang Ho Kwon, Bo-Yi Guo, Melissa Grant-Peters, Heena R Divecha, Madhavi Tippani, Chaichontat Sriworarat, Annie B Nguyen, Prashanthi Ravichandran, Matthew Nguyen Tran, Arta Seyedian, null null, Thomas M Hyde, Joel E Kleinman, Alexis J Battle, Stephanie Cerceo Page, Mina Ryten, Stephanie C Hicks, Keri Martinowich, Leonardo Collado-Torres, Kristen R Maynard
Integrated single cell and unsupervised spatial transcriptomic analysis defines molecular anatomy of the human dorsolateral prefrontal cortex. bioRxiv : the preprint server for biology (2023)
Chaichontat Sriworarat, Annie B Nguyen, Nicholas J Eagles, Leonardo Collado-Torres, Keri Martinowich, Kristen R Maynard, Stephanie C Hicks
Performant web-based interactive visualization tool for spatially-resolved transcriptomics experiments. bioRxiv : the preprint server for biology (2023)
Chaichontat Sriworarat, Annie B Nguyen, Nicholas J Eagles, Leonardo Collado-Torres, Keri Martinowich, Kristen R Maynard, Stephanie C Hicks
Performant web-based interactive visualization tool for spatially-resolved transcriptomics experiments. Biological imaging 3 (2023)
Louise A Huuki-Myers, Abby Spangler, Nicholas J Eagles, Kelsey D Montgomery, Sang Ho Kwon, Bo-Yi Guo, Melissa Grant-Peters, Heena R Divecha, Madhavi Tippani, Chaichontat Sriworarat, Annie B Nguyen, Prashanthi Ravichandran, Matthew Nguyen Tran, Arta Seyedian, null null, Thomas M Hyde, Joel E Kleinman, Alexis J Battle, Stephanie Cerceo Page, Mina Ryten, Stephanie C Hicks, Keri Martinowich, Leonardo Collado-Torres, Kristen R Maynard
Integrated single cell and unsupervised spatial transcriptomic analysis defines molecular anatomy of the human dorsolateral prefrontal cortex. bioRxiv : the preprint server for biology (2023)
Chaichontat Sriworarat, Annie B Nguyen, Nicholas J Eagles, Leonardo Collado-Torres, Keri Martinowich, Kristen R Maynard, Stephanie C Hicks
Performant web-based interactive visualization tool for spatially-resolved transcriptomics experiments. bioRxiv : the preprint server for biology (2023)
Stephanie Cerceo Page, Srinidhi Rao Sripathy, Federica Farinelli, Zengyou Ye, Yanhong Wang, Daniel J Hiler, Elizabeth A Pattie, Claudia V Nguyen, Madhavi Tippani, Rebecca L Moses, Huei-Ying Chen, Matthew Nguyen Tran, Nicholas J Eagles, Joshua M Stolz, Joseph L Catallini, Olivia R Soudry, Dwight Dickinson, Karen F Berman, Jose A Apud, Daniel R Weinberger, Keri Martinowich, Andrew E Jaffe, Richard E Straub, Brady J Maher
Electrophysiological measures from human iPSC-derived neurons are associated with schizophrenia clinical status and predict individual cognitive performance. Proceedings of the National Academy of Sciences of the United States of America 119 (3) (2022)
Kira A Perzel Mandell, Nicholas J Eagles, Richard Wilton, Amanda J Price, Stephen Andrew Semick, Leonardo Collado-Torres, William S Ulrich, Ran Tao, Shizhong Han, Alexander S Szalay, Thomas M Hyde, Joel E Kleinman, Daniel R Weinberger, Andrew E Jaffe
Genome-wide sequencing-based identification of methylation quantitative trait loci and their role in schizophrenia risk. Nature communications 12 (1) (2021)