Shizhong Han

Publication Activity (10 Years)

Years Active: 2022-2024
Publications (10 Years): 29

Top Topics

Alcohol Use Disorder

Dna Methylation

Prefrontal Cortex

Top Venues

bioRxiv : the preprint server for biology

Nature neuroscience

medRxiv : the preprint server for health sciences

Research square

This page only lists publications with an associated author ORCID identifier.

Publications

Julie D White, Melyssa S Minto, Caryn Willis, Bryan C Quach, Shizhong Han, Ran Tao, Amy Deep-Soboslay, Lea Zillich, Shaunna L Clark, Edwin J C G van den Oord, Thomas M Hyde, R Dayne Mayfield, Bradley Todd Webb, Eric O Johnson, Joel E Kleinman, Laura J Bierut, Dana B Hancock
Alcohol Use Disorder-Associated DNA Methylation in the Nucleus Accumbens and Dorsolateral Prefrontal Cortex. medRxiv : the preprint server for health sciences (2024)
Kynon J M Benjamin, Qiang Chen, Nicholas J Eagles, Louise A Huuki-Myers, Leonardo Collado-Torres, Joshua M Stolz, Geo Pertea, Joo-Heon Shin, Apua C M Paquola, Thomas M Hyde, Joel E Kleinman, Andrew E Jaffe, Shizhong Han, Daniel R Weinberger
Analysis of gene expression in the postmortem brain of neurotypical Black Americans reveals contributions of genetic ancestry. Nature neuroscience (2024)
Jiyun Zhou, Chongyuan Luo, Hanqing Liu, Matthew G Heffel, Richard E Straub, Joel E Kleinman, Thomas M Hyde, Joseph R Ecker, Daniel R Weinberger, Shizhong Han
scMeFormer: a transformer-based deep learning model for imputing DNA methylation states in single cells enhances the detection of epigenetic alterations in schizophrenia. bioRxiv : the preprint server for biology (2024)
Julie D White, Melyssa S Minto, Caryn Willis, Bryan C Quach, Shizhong Han, Ran Tao, Amy Deep-Soboslay, Lea Zillich, Shaunna L Clark, Edwin J C G van den Oord, Thomas M Hyde, R Dayne Mayfield, Bradley Todd Webb, Eric O Johnson, Joel E Kleinman, Laura J Bierut, Dana B Hancock
Alcohol Use Disorder-Associated DNA Methylation in the Nucleus Accumbens and Dorsolateral Prefrontal Cortex. medRxiv : the preprint server for health sciences (2024)
Jiyun Zhou, Chongyuan Luo, Hanqing Liu, Matthew G Heffel, Richard E Straub, Joel E Kleinman, Thomas M Hyde, Joseph R Ecker, Daniel R Weinberger, Shizhong Han
scMeFormer: a transformer-based deep learning model for imputing DNA methylation states in single cells enhances the detection of epigenetic alterations in schizophrenia. bioRxiv : the preprint server for biology (2024)
Kynon J M Benjamin, Qiang Chen, Nicholas J Eagles, Louise A Huuki-Myers, Leonardo Collado-Torres, Joshua M Stolz, Geo Pertea, Joo-Heon Shin, Apua C M Paquola, Thomas M Hyde, Joel E Kleinman, Andrew E Jaffe, Shizhong Han, Daniel R Weinberger
Analysis of gene expression in the postmortem brain of neurotypical Black Americans reveals contributions of genetic ancestry. Nature neuroscience 27 (6) (2024)
Xiangning Chen, Yimei Liu, Joan Cue, Mira Han, Vishwajit Nimgaonkar, Daniel R Weinberger, Shizhong Han, Zhong-Ming Zhao, Jingchun Chen
Classification of Schizophrenia, Bipolar Disorder and Major Depressive Disorder with Comorbid Traits and Deep Learning Algorithms. Research square (2024)
Kynon J M Benjamin, Qiang Chen, Nicholas J Eagles, Louise A Huuki-Myers, Leonardo Collado-Torres, Joshua M Stolz, Geo Pertea, Joo-Heon Shin, Apua C M Paquola, Thomas M Hyde, Joel E Kleinman, Andrew E Jaffe, Shizhong Han, Daniel R Weinberger
Analysis of gene expression in the postmortem brain of neurotypical Black Americans reveals contributions of genetic ancestry. Nature neuroscience 27 (6) (2024)
Xiangning Chen, Yimei Liu, Joan Cue, Mira Han, Vishwajit Nimgaonkar, Daniel R Weinberger, Shizhong Han, Zhong-Ming Zhao, Jingchun Chen
Classification of Schizophrenia, Bipolar Disorder and Major Depressive Disorder with Comorbid Traits and Deep Learning Algorithms. Research square (2024)
Julie D White, Melyssa S Minto, Caryn Willis, Bryan C Quach, Shizhong Han, Ran Tao, Amy Deep-Soboslay, Lea Zillich, Shaunna L Clark, Edwin J C G van den Oord, Thomas M Hyde, R Dayne Mayfield, Bradley Todd Webb, Eric O Johnson, Joel E Kleinman, Laura J Bierut, Dana B Hancock
Alcohol Use Disorder-Associated DNA Methylation in the Nucleus Accumbens and Dorsolateral Prefrontal Cortex. medRxiv : the preprint server for health sciences (2024)
Erik D Nelson, Madhavi Tippani, Anthony D Ramnauth, Heena R Divecha, Ryan A Miller, Nicholas J Eagles, Elizabeth A Pattie, Sang Ho Kwon, Svitlana V Bach, Uma M Kaipa, Jianing Yao, Joel E Kleinman, Leonardo Collado-Torres, Shizhong Han, Kristen R Maynard, Thomas M Hyde, Keri Martinowich, Stephanie Cerceo Page, Stephanie C Hicks
An integrated single-nucleus and spatial transcriptomics atlas reveals the molecular landscape of the human hippocampus. bioRxiv : the preprint server for biology (2024)
Julie D White, Melyssa S Minto, Caryn Willis, Bryan C Quach, Shizhong Han, Ran Tao, Amy Deep-Soboslay, Lea Zillich, Shaunna L Clark, Edwin J C G van den Oord, Thomas M Hyde, R Dayne Mayfield, Bradley Todd Webb, Eric O Johnson, Joel E Kleinman, Laura J Bierut, Dana B Hancock
Alcohol Use Disorder-Associated DNA Methylation in the Nucleus Accumbens and Dorsolateral Prefrontal Cortex. medRxiv : the preprint server for health sciences (2024)
Kynon J M Benjamin, Qiang Chen, Nicholas J Eagles, Louise A Huuki-Myers, Leonardo Collado-Torres, Joshua M Stolz, Geo Pertea, Joo-Heon Shin, Apua C M Paquola, Thomas M Hyde, Joel E Kleinman, Andrew E Jaffe, Shizhong Han, Daniel R Weinberger
Analysis of gene expression in the postmortem brain of neurotypical Black Americans reveals contributions of genetic ancestry. Nature neuroscience 27 (6) (2024)
Xiangning Chen, Yimei Liu, Joan Cue, Mira Han Vishwajit Nimgaonkar, Daniel R Weinberger, Shizhong Han, Zhong-Ming Zhao, Jingchun Chen
Classification of Schizophrenia, Bipolar Disorder and Major Depressive Disorder with Comorbid Traits and Deep Learning Algorithms. Research square (2024)
Jiyun Zhou, Chongyuan Luo, Hanqing Liu, Matthew G Heffel, Richard E Straub, Joel E Kleinman, Thomas M Hyde, Joseph R Ecker, Daniel R Weinberger, Shizhong Han
scMeFormer: a transformer-based deep learning model for imputing DNA methylation states in single cells enhances the detection of epigenetic alterations in schizophrenia. bioRxiv : the preprint server for biology (2024)
Erik D Nelson, Madhavi Tippani, Anthony D Ramnauth, Heena R Divecha, Ryan A Miller, Nicholas J Eagles, Elizabeth A Pattie, Sang Ho Kwon, Svitlana V Bach, Uma M Kaipa, Jianing Yao, Joel E Kleinman, Leonardo Collado-Torres, Shizhong Han, Kristen R Maynard, Thomas M Hyde, Keri Martinowich, Stephanie Cerceo Page, Stephanie C Hicks
An integrated single-nucleus and spatial transcriptomics atlas reveals the molecular landscape of the human hippocampus. bioRxiv : the preprint server for biology (2024)
Kynon J M Benjamin, Qiang Chen, Nicholas J Eagles, Louise A Huuki-Myers, Leonardo Collado-Torres, Joshua M Stolz, Geo Pertea, Joo-Heon Shin, Apua C M Paquola, Thomas M Hyde, Joel E Kleinman, Andrew E Jaffe, Shizhong Han, Daniel R Weinberger
Analysis of gene expression in the postmortem brain of neurotypical Black Americans reveals contributions of genetic ancestry. Nature neuroscience 27 (6) (2024)
Kynon J M Benjamin, Qiang Chen, Nicholas J Eagles, Louise A Huuki-Myers, Leonardo Collado-Torres, Joshua M Stolz, Geo Pertea, Joo-Heon Shin, Apua C M Paquola, Thomas M Hyde, Joel E Kleinman, Andrew E Jaffe, Shizhong Han, Daniel R Weinberger
Analysis of gene expression in the postmortem brain of neurotypical Black Americans reveals contributions of genetic ancestry. Nature neuroscience 27 (6) (2024)
Jiyun Zhou, Daniel R Weinberger, Shizhong Han
Deep learning predicts DNA methylation regulatory variants in specific brain cell types and enhances fine mapping for brain disorders. bioRxiv : the preprint server for biology (2024)
Jiyun Zhou, Chongyuan Luo, Hanqing Liu, Matthew G Heffel, Richard E Straub, Joel E Kleinman, Thomas M Hyde, Joseph R Ecker, Daniel R Weinberger, Shizhong Han
scMeFormer: a transformer-based deep learning model for imputing DNA methylation states in single cells enhances the detection of epigenetic alterations in schizophrenia. bioRxiv : the preprint server for biology (2024)
Jiyun Zhou, Daniel R Weinberger, Shizhong Han
Deep learning predicts DNA methylation regulatory variants in specific brain cell types and enhances fine mapping for brain disorders. bioRxiv : the preprint server for biology (2024)
Julie D White, Melyssa S Minto, Caryn Willis, Bryan C Quach, Shizhong Han, Ran Tao, Amy Deep-Soboslay, Lea Zillich, Shaunna L Clark, Edwin J C G van den Oord, Thomas M Hyde, R Dayne Mayfield, Bradley Todd Webb, Eric O Johnson, Joel E Kleinman, Laura J Bierut, Dana B Hancock
Alcohol Use Disorder-Associated DNA Methylation in the Nucleus Accumbens and Dorsolateral Prefrontal Cortex. medRxiv : the preprint server for health sciences (2024)
Kynon J M Benjamin, Qiang Chen, Nicholas J Eagles, Louise A Huuki-Myers, Leonardo Collado-Torres, Joshua M Stolz, Geo Pertea, Joo-Heon Shin, Apua C M Paquola, Thomas M Hyde, Joel E Kleinman, Andrew E Jaffe, Shizhong Han, Daniel R Weinberger
Analysis of gene expression in the postmortem brain of neurotypical Black Americans reveals contributions of genetic ancestry. Nature neuroscience (2024)
Gianluca Ursini, Pasquale Di Carlo, Sreya Mukherjee, Qiang Chen, Shizhong Han, Jiyoung Kim, Maya Deyssenroth, Carmen J Marsit, Jia Chen, Ke Hao, Giovanna Punzi, Daniel R Weinberger
Prioritization of potential causative genes for schizophrenia in placenta. Nature communications 14 (1) (2023)
Kynon J M Benjamin, Qiang Chen, Nicholas J Eagles, Louise A Huuki-Myers, Leonardo Collado-Torres, Joshua M Stolz, Joo Heon Shin, Apua C M Paquola, Thomas M Hyde, Joel E Kleinman, Andrew E Jaffe, Shizhong Han, Daniel R Weinberger
Genetic and environmental contributions to ancestry differences in gene expression in the human brain. bioRxiv : the preprint server for biology (2023)
Megan Ulmer Carnes, Bryan C Quach, Linran Zhou, Shizhong Han, Ran Tao, Meisha Mandal, Amy Deep-Soboslay, Jesse A Marks, Grier P Page, Brion S Maher, Andrew E Jaffe, Hyejung Won, Laura J Bierut, Thomas M Hyde, Joel E Kleinman, Eric O Johnson, Dana B Hancock
Smoking-informed methylation and expression QTLs in human brain and colocalization with smoking-associated genetic loci. medRxiv : the preprint server for health sciences (2023)
Gianluca Ursini, Pasquale Di Carlo, Sreya Mukherjee, Qiang Chen, Shizhong Han, Jiyoung Kim, Maya Deyssenroth, Carmen J Marsit, Jia Chen, Ke Hao, Giovanna Punzi, Daniel R Weinberger
Prioritization of potential causative genes for schizophrenia in placenta. Nature communications 14 (1) (2023)
Gianluca Ursini, Pasquale Di Carlo, Sreya Mukherjee, Qiang Chen, Shizhong Han, Jiyoung Kim, Maya Deyssenroth, Carmen J Marsit, Jia Chen, Ke Hao, Giovanna Punzi, Daniel R Weinberger
Prioritization of potential causative genes for schizophrenia in placenta. Nature communications 14 (1) (2023)
Kira A Perzel Mandell, Nicholas J Eagles, Amy Deep-Soboslay, Ran Tao, Shizhong Han, Richard Wilton, Alexander S Szalay, Thomas M Hyde, Joel E Kleinman, Andrew E Jaffe, Daniel R Weinberger
Molecular phenotypes associated with antipsychotic drugs in the human caudate nucleus. Molecular psychiatry 27 (4) (2022)