Nicolae Sapoval

Publication Activity (10 Years)

Years Active: 2021-2024
Publications (10 Years): 22

Top Topics

Respiratory Syndrome Coronavirus

Genome Wide Analysis

Top Venues

bioRxiv : the preprint server for biology

Nature communications

medRxiv : the preprint server for health sciences

Genome research

This page only lists publications with an associated author ORCID identifier.

Publications

Nicolae Sapoval, Yunxi Liu, Kristen D Curry, Bryce Kille, Wenyu Huang, Natalie Kokroko, Michael G Nute, Alona Tyshaieva, Alexander T Dilthey, Erin K Molloy, Todd J Treangen
Lightweight taxonomic profiling of long-read metagenomic datasets with Lemur and Magnet. bioRxiv : the preprint server for biology (2024)
Nicolae Sapoval, Yunxi Liu, Kristen D Curry, Bryce Kille, Wenyu Huang, Natalie Kokroko, Michael G Nute, Alona Tyshaieva, Alexander T Dilthey, Erin K Molloy, Todd J Treangen
Lightweight taxonomic profiling of long-read sequenced metagenomes with Lemur and Magnet. bioRxiv : the preprint server for biology (2024)
Nicolae Sapoval, Yunxi Liu, Kristen D Curry, Bryce Kille, Wenyu Huang, Natalie Kokroko, Michael G Nute, Alona Tyshaieva, Alexander T Dilthey, Erin K Molloy, Todd J Treangen
Lightweight taxonomic profiling of long-read metagenomic datasets with Lemur and Magnet. bioRxiv : the preprint server for biology (2024)
Michael Xiangjiang Wang, Esther G Lou, Nicolae Sapoval, Eddie Kim, Prashant Bharadwaj Kalvapalle, Bryce Kille, R A Leo Elworth, Yunxi Liu, Yilei Fu, Lauren B Stadler, Todd J Treangen
Olivar: towards automated variant aware primer design for multiplex tiled amplicon sequencing of pathogens. Nature communications 15 (1) (2024)
Michael Xiangjiang Wang, Esther G Lou, Nicolae Sapoval, Eddie Kim, Prashant Bharadwaj Kalvapalle, Bryce Kille, R A Leo Elworth, Yunxi Liu, Yilei Fu, Lauren B Stadler, Todd J Treangen
Olivar: towards automated variant aware primer design for multiplex tiled amplicon sequencing of pathogens. Nature communications 15 (1) (2024)
Nicolae Sapoval, Yunxi Liu, Kristen D Curry, Bryce Kille, Wenyu Huang, Natalie Kokroko, Michael G Nute, Alona Tyshaieva, Alexander T Dilthey, Erin K Molloy, Todd J Treangen
Lightweight taxonomic profiling of long-read sequenced metagenomes with Lemur and Magnet. bioRxiv : the preprint server for biology (2024)
Michael Xiangjiang Wang, Esther G Lou, Nicolae Sapoval, Eddie Kim, Prashant Bharadwaj Kalvapalle, Bryce Kille, R A Leo Elworth, Yunxi Liu, Yilei Fu, Lauren B Stadler, Todd J Treangen
Olivar: towards automated variant aware primer design for multiplex tiled amplicon sequencing of pathogens. Nature communications 15 (1) (2024)
Michael Xiangjiang Wang, Esther G Lou, Nicolae Sapoval, Eddie Kim, Prashant Bharadwaj Kalvapalle, Bryce Kille, R A Leo Elworth, Yunxi Liu, Yilei Fu, Lauren B Stadler, Todd J Treangen
Olivar: towards automated variant aware primer design for multiplex tiled amplicon sequencing of pathogens. Nature communications 15 (1) (2024)
Nicolae Sapoval, Yunxi Liu, Kristen D Curry, Bryce Kille, Wenyu Huang, Natalie Kokroko, Michael G Nute, Alona Tyshaieva, Alexander T Dilthey, Erin K Molloy, Todd J Treangen
Lightweight taxonomic profiling of long-read metagenomic datasets with Lemur and Magnet. bioRxiv : the preprint server for biology (2024)
Nicolae Sapoval, Yunxi Liu, Kristen D Curry, Bryce Kille, Wenyu Huang, Natalie Kokroko, Michael G Nute, Alona Tyshaieva, Alexander T Dilthey, Erin K Molloy, Todd J Treangen
Lightweight taxonomic profiling of long-read sequenced metagenomes with Lemur and Magnet. bioRxiv : the preprint server for biology (2024)
Nicolae Sapoval, Yunxi Liu, Kristen D Curry, Bryce Kille, Wenyu Huang, Natalie Kokroko, Michael G Nute, Alona Tyshaieva, Alexander T Dilthey, Erin K Molloy, Todd J Treangen
Lightweight taxonomic profiling of long-read metagenomic datasets with Lemur and Magnet. bioRxiv : the preprint server for biology (2024)
Michael Xiangjiang Wang, Esther G Lou, Nicolae Sapoval, Eddie Kim, Prashant Bharadwaj Kalvapalle, Bryce Kille, R A Leo Elworth, Yunxi Liu, Yilei Fu, Lauren B Stadler, Todd J Treangen
Olivar: fully automated and variant aware primer design for multiplex tiled amplicon sequencing of pathogen genomes. bioRxiv : the preprint server for biology (2023)
Yunxi Liu, Nicolae Sapoval, Pilar Gallego-García, Laura Tomás, David Posada, Todd J Treangen, Lauren B Stadler
Crykey: Rapid Identification of SARS-CoV-2 Cryptic Mutations in Wastewater. medRxiv : the preprint server for health sciences (2023)
Nicolae Sapoval, Yunxi Liu, Esther G Lou, Loren P Hopkins, Katherine B Ensor, Rebecca Schneider, Lauren B Stadler, Todd J Treangen
Enabling accurate and early detection of recently emerged SARS-CoV-2 variants of concern in wastewater. Nature communications 14 (1) (2023)
Nicolae Sapoval, Yunxi Liu, Esther G Lou, Loren P Hopkins, Katherine B Ensor, Rebecca Schneider, Lauren B Stadler, Todd J Treangen
Enabling accurate and early detection of recently emerged SARS-CoV-2 variants of concern in wastewater. Nature communications 14 (1) (2023)
Nicolae Sapoval, Yunxi Liu, Esther G Lou, Loren P Hopkins, Katherine B Ensor, Rebecca Schneider, Lauren B Stadler, Todd J Treangen
Enabling accurate and early detection of recently emerged SARS-CoV-2 variants of concern in wastewater. Nature communications 14 (1) (2023)
Michael Xiangjiang Wang, Esther G Lou, Nicolae Sapoval, Eddie Kim, Prashant Bharadwaj Kalvapalle, Bryce Kille, R A Leo Elworth, Yunxi Liu, Yilei Fu, Lauren B Stadler, Todd J Treangen
Olivar: fully automated and variant aware primer design for multiplex tiled amplicon sequencing of pathogen genomes. bioRxiv : the preprint server for biology (2023)
Michael Xiangjiang Wang, Esther G Lou, Nicolae Sapoval, Eddie Kim, Prashant Bharadwaj Kalvapalle, Bryce Kille, R A Leo Elworth, Yunxi Liu, Yilei Fu, Lauren B Stadler, Todd J Treangen
Olivar: fully automated and variant aware primer design for multiplex tiled amplicon sequencing of pathogen genomes. bioRxiv : the preprint server for biology (2023)
Pilar Gallego-García, Nair Varela, Nuria Estévez-Gómez, Loretta De Chiara, Iria Fernández-Silva, Diana Valverde, Nicolae Sapoval, Todd J Treangen, Benito Regueiro, Jorge Julio Cabrera-Alvargonzález, Víctor Del Campo, Sonia Pérez-Castro, David Posada
Limited genomic reconstruction of SARS-CoV-2 transmission history within local epidemiological clusters. Virus evolution 8 (1) (2022)
Nicolae Sapoval, Yunxi Liu, Esther G Lou, Loren Hopkins, Katherine B Ensor, Rebecca Schneider, Lauren B Stadler, Todd J Treangen
Enabling Earlier Detection of Recently Emerged SARS-CoV-2 Variants of Concern in Wastewater. medRxiv : the preprint server for health sciences (2022)
Nicolae Sapoval, Amirali Aghazadeh, Michael G Nute, Dinler Amaral Antunes, Advait Balaji, Richard Baraniuk, C J Barberan, Ruth Dannenfelser, Chen Dun, Mohammadamin Edrisi, R A Leo Elworth, Bryce Kille, Anastasios Kyrillidis, Luay K Nakhleh, Cameron R Wolfe, Zhi Yan, Victoria Yao, Todd J Treangen
Current progress and open challenges for applying deep learning across the biosciences. Nature communications 13 (1) (2022)
Nicolae Sapoval, Medhat Mahmoud, Michael D Jochum, Yunxi Liu, R A Leo Elworth, Qi Wang, Dreycey Albin, Huw A Ogilvie, Michael D Lee, Sonia Villapol, Kyle M Hernandez, Irina Maljkovic Berry, Jonathan Foox, Afshin Behesti, Krista L Ternus, Kjersti M Aagaard, David Posada, Christopher E Mason, Fritz J Sedlazeck, Todd J Treangen
SARS-CoV-2 genomic diversity and the implications for qRT-PCR diagnostics and transmission. Genome research 31 (4) (2021)