Yilei Fu

Publication Activity (10 Years)

Years Active: 2022-2024
Publications (10 Years): 17

Top Topics

Intellectual Disability

Respiratory Syndrome Coronavirus

Single Molecule

Top Venues

Nature communications

bioRxiv : the preprint server for biology

Science advances

This page only lists publications with an associated author ORCID identifier.

Publications

Yilei Fu, Sergey Aganezov, Medhat Mahmoud, John Beaulaurier, Sissel Juul, Todd J Treangen, Fritz J Sedlazeck
MethPhaser: methylation-based long-read haplotype phasing of human genomes. Nature communications 15 (1) (2024)
Yilei Fu, Sergey Aganezov, Medhat Mahmoud, John Beaulaurier, Sissel Juul, Todd J Treangen, Fritz J Sedlazeck
MethPhaser: methylation-based long-read haplotype phasing of human genomes. Nature communications 15 (1) (2024)
Daniel Paiva Agustinho, Yilei Fu, Vipin K Menon, Ginger A Metcalf, Todd J Treangen, Fritz J Sedlazeck
Unveiling microbial diversity: harnessing long-read sequencing technology. Nature methods 21 (6) (2024)
Michael Xiangjiang Wang, Esther G Lou, Nicolae Sapoval, Eddie Kim, Prashant Bharadwaj Kalvapalle, Bryce Kille, R A Leo Elworth, Yunxi Liu, Yilei Fu, Lauren B Stadler, Todd J Treangen
Olivar: towards automated variant aware primer design for multiplex tiled amplicon sequencing of pathogens. Nature communications 15 (1) (2024)
Michael Xiangjiang Wang, Esther G Lou, Nicolae Sapoval, Eddie Kim, Prashant Bharadwaj Kalvapalle, Bryce Kille, R A Leo Elworth, Yunxi Liu, Yilei Fu, Lauren B Stadler, Todd J Treangen
Olivar: towards automated variant aware primer design for multiplex tiled amplicon sequencing of pathogens. Nature communications 15 (1) (2024)
Yilei Fu, Sergey Aganezov, Medhat Mahmoud, John Beaulaurier, Sissel Juul, Todd J Treangen, Fritz J Sedlazeck
MethPhaser: methylation-based long-read haplotype phasing of human genomes. Nature communications 15 (1) (2024)
Michael Xiangjiang Wang, Esther G Lou, Nicolae Sapoval, Eddie Kim, Prashant Bharadwaj Kalvapalle, Bryce Kille, R A Leo Elworth, Yunxi Liu, Yilei Fu, Lauren B Stadler, Todd J Treangen
Olivar: towards automated variant aware primer design for multiplex tiled amplicon sequencing of pathogens. Nature communications 15 (1) (2024)
Michael Xiangjiang Wang, Esther G Lou, Nicolae Sapoval, Eddie Kim, Prashant Bharadwaj Kalvapalle, Bryce Kille, R A Leo Elworth, Yunxi Liu, Yilei Fu, Lauren B Stadler, Todd J Treangen
Olivar: towards automated variant aware primer design for multiplex tiled amplicon sequencing of pathogens. Nature communications 15 (1) (2024)
Yilei Fu, Sergey Aganezov, Medhat Mahmoud, John Beaulaurier, Sissel Juul, Todd J Treangen, Fritz J Sedlazeck
MethPhaser: methylation-based long-read haplotype phasing of human genomes. Nature communications 15 (1) (2024)
Daniel Paiva Agustinho, Yilei Fu, Vipin K Menon, Ginger A Metcalf, Todd J Treangen, Fritz J Sedlazeck
Unveiling microbial diversity: harnessing long-read sequencing technology. Nature methods 21 (6) (2024)
Daniel Paiva Agustinho, Yilei Fu, Vipin K Menon, Ginger A Metcalf, Todd J Treangen, Fritz J Sedlazeck
Unveiling microbial diversity: harnessing long-read sequencing technology. Nature methods (2024)
Michael Xiangjiang Wang, Esther G Lou, Nicolae Sapoval, Eddie Kim, Prashant Bharadwaj Kalvapalle, Bryce Kille, R A Leo Elworth, Yunxi Liu, Yilei Fu, Lauren B Stadler, Todd J Treangen
Olivar: fully automated and variant aware primer design for multiplex tiled amplicon sequencing of pathogen genomes. bioRxiv : the preprint server for biology (2023)
Michael Xiangjiang Wang, Esther G Lou, Nicolae Sapoval, Eddie Kim, Prashant Bharadwaj Kalvapalle, Bryce Kille, R A Leo Elworth, Yunxi Liu, Yilei Fu, Lauren B Stadler, Todd J Treangen
Olivar: fully automated and variant aware primer design for multiplex tiled amplicon sequencing of pathogen genomes. bioRxiv : the preprint server for biology (2023)
Michael Xiangjiang Wang, Esther G Lou, Nicolae Sapoval, Eddie Kim, Prashant Bharadwaj Kalvapalle, Bryce Kille, R A Leo Elworth, Yunxi Liu, Yilei Fu, Lauren B Stadler, Todd J Treangen
Olivar: fully automated and variant aware primer design for multiplex tiled amplicon sequencing of pathogen genomes. bioRxiv : the preprint server for biology (2023)
So Hyun Park, Mingming Cao, Yidan Pan, Timothy H Davis, Lavanya Saxena, Harshavardhan Deshmukh, Yilei Fu, Todd J Treangen, Vivien A Sheehan, Gang Bao
Comprehensive analysis and accurate quantification of unintended large gene modifications induced by CRISPR-Cas9 gene editing. Science advances 8 (42) (2022)
Yilei Fu, Medhat Mahmoud, Viginesh Vaibhav Muraliraman, Fritz J Sedlazeck, Todd J Treangen
Vulcan: Improved long-read mapping and structural variant calling via dual-mode alignment. GigaScience 10 (9) (2022)
Kimberly Walker, Divya Kalra, Rebecca Lowdon, Guangyi Chen, David Molik, Daniela C Soto, Fawaz Dabbaghie, Ahmad Al Khleifat, Medhat Mahmoud, Luis F Paulin, Muhammad Sohail Raza, Susanne P Pfeifer, Daniel Paiva Agustinho, Elbay Aliyev, Pavel Avdeyev, Enrico R Barrozo, Sairam Behera, Kimberley Billingsley, Li Chuin Chong, Deepak Choubey, Wouter De Coster, Yilei Fu, Alejandro Rafael Gener, Timothy Hefferon, David Morgan Henke, Wolfram Höps, Anastasia Illarionova, Michael D Jochum, Maria Jose, Rupesh K Kesharwani, Sree Rohit Raj Kolora, Jędrzej Kubica, Priya Lakra, Damaris Lattimer, Chia-Sin Liew, Bai-Wei Lo, Chunhsuan Lo, Anneri Lötter, Sina Majidian, Suresh Kumar Mendem, Rajarshi Mondal, Hiroko Ohmiya, Nasrin Parvin, Carolina M Peralta, Chi-Lam Poon, Ramanandan Prabhakaran, Marie Saitou, Aditi Sammi, Philippe Sanio, Nicolae Sapoval, Najeeb Syed, Todd Treangen, Gaojianyong Wang, Tiancheng Xu, Jianzhi Yang, Shangzhe Zhang, Weiyu Zhou, Fritz J Sedlazeck, Ben Busby
The third international hackathon for applying insights into large-scale genomic composition to use cases in a wide range of organisms. F1000Research 11 (2022)