Bryce Kille

Publication Activity (10 Years)

Years Active: 2021-2024
Publications (10 Years): 26

Top Topics

Respiratory Syndrome Coronavirus

Top Venues

bioRxiv : the preprint server for biology

Nature communications

Bioinformatics (Oxford, England)

This page only lists publications with an associated author ORCID identifier.

Publications

Bryce Kille, Michael G Nute, Victor Huang, Eddie Kim, Adam M Phillippy, Todd J Treangen
Parsnp 2.0: scalable core-genome alignment for massive microbial datasets. Bioinformatics (Oxford, England) 40 (5) (2024)
Nicolae Sapoval, Yunxi Liu, Kristen D Curry, Bryce Kille, Wenyu Huang, Natalie Kokroko, Michael G Nute, Alona Tyshaieva, Alexander T Dilthey, Erin K Molloy, Todd J Treangen
Lightweight taxonomic profiling of long-read metagenomic datasets with Lemur and Magnet. bioRxiv : the preprint server for biology (2024)
Bryce Kille, Michael G Nute, Victor Huang, Eddie Kim, Adam M Phillippy, Todd J Treangen
Parsnp 2.0: scalable core-genome alignment for massive microbial datasets. Bioinformatics (Oxford, England) 40 (5) (2024)
Nicolae Sapoval, Yunxi Liu, Kristen D Curry, Bryce Kille, Wenyu Huang, Natalie Kokroko, Michael G Nute, Alona Tyshaieva, Alexander T Dilthey, Erin K Molloy, Todd J Treangen
Lightweight taxonomic profiling of long-read sequenced metagenomes with Lemur and Magnet. bioRxiv : the preprint server for biology (2024)
Bryce Kille, Michael G Nute, Victor Huang, Eddie Kim, Adam M Phillippy, Todd J Treangen
Parsnp 2.0: Scalable Core-Genome Alignment for Massive Microbial Datasets. bioRxiv : the preprint server for biology (2024)
Nicolae Sapoval, Yunxi Liu, Kristen D Curry, Bryce Kille, Wenyu Huang, Natalie Kokroko, Michael G Nute, Alona Tyshaieva, Alexander T Dilthey, Erin K Molloy, Todd J Treangen
Lightweight taxonomic profiling of long-read metagenomic datasets with Lemur and Magnet. bioRxiv : the preprint server for biology (2024)
Michael Xiangjiang Wang, Esther G Lou, Nicolae Sapoval, Eddie Kim, Prashant Bharadwaj Kalvapalle, Bryce Kille, R A Leo Elworth, Yunxi Liu, Yilei Fu, Lauren B Stadler, Todd J Treangen
Olivar: towards automated variant aware primer design for multiplex tiled amplicon sequencing of pathogens. Nature communications 15 (1) (2024)
Michael Xiangjiang Wang, Esther G Lou, Nicolae Sapoval, Eddie Kim, Prashant Bharadwaj Kalvapalle, Bryce Kille, R A Leo Elworth, Yunxi Liu, Yilei Fu, Lauren B Stadler, Todd J Treangen
Olivar: towards automated variant aware primer design for multiplex tiled amplicon sequencing of pathogens. Nature communications 15 (1) (2024)
Nicolae Sapoval, Yunxi Liu, Kristen D Curry, Bryce Kille, Wenyu Huang, Natalie Kokroko, Michael G Nute, Alona Tyshaieva, Alexander T Dilthey, Erin K Molloy, Todd J Treangen
Lightweight taxonomic profiling of long-read sequenced metagenomes with Lemur and Magnet. bioRxiv : the preprint server for biology (2024)
Bryce Kille, Michael G Nute, Victor Huang, Eddie Kim, Adam M Phillippy, Todd J Treangen
Parsnp 2.0: Scalable Core-Genome Alignment for Massive Microbial Datasets. bioRxiv : the preprint server for biology (2024)
Michael Xiangjiang Wang, Esther G Lou, Nicolae Sapoval, Eddie Kim, Prashant Bharadwaj Kalvapalle, Bryce Kille, R A Leo Elworth, Yunxi Liu, Yilei Fu, Lauren B Stadler, Todd J Treangen
Olivar: towards automated variant aware primer design for multiplex tiled amplicon sequencing of pathogens. Nature communications 15 (1) (2024)
Bryce Kille, Michael G Nute, Victor Huang, Eddie Kim, Adam M Phillippy, Todd J Treangen
Parsnp 2.0: scalable core-genome alignment for massive microbial datasets. Bioinformatics (Oxford, England) 40 (5) (2024)
Bryce Kille, Michael G Nute, Victor Huang, Eddie Kim, Adam M Phillippy, Todd J Treangen
Parsnp 2.0: Scalable Core-Genome Alignment for Massive Microbial Datasets. bioRxiv : the preprint server for biology (2024)
Michael Xiangjiang Wang, Esther G Lou, Nicolae Sapoval, Eddie Kim, Prashant Bharadwaj Kalvapalle, Bryce Kille, R A Leo Elworth, Yunxi Liu, Yilei Fu, Lauren B Stadler, Todd J Treangen
Olivar: towards automated variant aware primer design for multiplex tiled amplicon sequencing of pathogens. Nature communications 15 (1) (2024)
Nicolae Sapoval, Yunxi Liu, Kristen D Curry, Bryce Kille, Wenyu Huang, Natalie Kokroko, Michael G Nute, Alona Tyshaieva, Alexander T Dilthey, Erin K Molloy, Todd J Treangen
Lightweight taxonomic profiling of long-read metagenomic datasets with Lemur and Magnet. bioRxiv : the preprint server for biology (2024)
Bryce Kille, Michael G Nute, Victor Huang, Eddie Kim, Adam M Phillippy, Todd J Treangen
Parsnp 2.0: scalable core-genome alignment for massive microbial datasets. Bioinformatics (Oxford, England) 40 (5) (2024)
Nicolae Sapoval, Yunxi Liu, Kristen D Curry, Bryce Kille, Wenyu Huang, Natalie Kokroko, Michael G Nute, Alona Tyshaieva, Alexander T Dilthey, Erin K Molloy, Todd J Treangen
Lightweight taxonomic profiling of long-read sequenced metagenomes with Lemur and Magnet. bioRxiv : the preprint server for biology (2024)
DongAhn Yoo, Arang Rhie, Prajna Hebbar, Francesca Antonacci, Glennis A Logsdon, Steven Jared Solar, Dmitry Antipov, Brandon D Pickett, Yana Safonova, Francesco Montinaro, Yanting Luo, Joanna Malukiewicz, Jessica M Storer, Jiadong Lin, Abigail N Sequeira, Riley J Mangan, Glenn Hickey, Graciela Monfort Anez, Parithi Balachandran, Anton Bankevich, Christine R Beck, Arjun Biddanda, Matthew Borchers, Gerard G Bouffard, Emry Brannan, Shelise Y Brooks, Lucia Carbone, Laura Carrel, Yongwook Choi, Juyun Crawford, Mark Diekhans, Eric Engelbrecht, Cedric Feschotte, Giulio Formenti, Gage H Garcia, Luciana de Gennaro, David M Gilbert, Richard E Green, Andrea Guarracino, Ishaan Gupta, Diana Haddad, Junmin Han, Robert S Harris, Gabrielle A Hartley, William T Harvey, Michael Hiller, Kendra Hoekzema, Marlys L Houck, Hyeonsoo Jeong, Kaivan Kamali, Manolis Kellis, Bryce Kille, Chul Lee, Youngho Lee, William D Lees, Alexandra P Lewis, Qiuhui Li, Mark Loftus, Yong Hwee Eddie Loh, Hailey Loucks, Jian Ma, Yafei Mao, Juan F I Martinez, Patrick Masterson, Rajiv C McCoy, Barbara McGrath, Sean McKinney, Britta S Meyer, Karen H Miga, Saswat Kumar Mohanty, Katherine M Munson, Karol Pal, Matthew W Pennell, Pavel A Pevzner, David Porubsky, Tamara Potapova, Francisca R Ringeling, Joana L Rocha, Oliver A Ryder, Samuel Sacco, Swati Saha, Takayo Sasaki, Michael C Schatz, Nicholas J Schork, Cole Shanks, Linnéa Smeds, Dongmin R Son, Cynthia Steiner, Alexander P Sweeten, Michael G Tassia, Françoise Thibaud-Nissen, Edmundo Torres-González, Mihir Trivedi, Wenjie Wei, Julie Wertz, Muyu Yang, Panpan Zhang, Shilong Zhang, Yang Zhang, Zhenmiao Zhang, Sarah A Zhao, Yixin Zhu, Erich D Jarvis, Jennifer L Gerton, Iker Rivas-González, Benedict Paten, Zachary Alfano Szpiech, Christian D Huber, Tobias L Lenz, Miriam K Konkel, Soojin V Yi, Stefan Canzar, Corey T Watson, Peter H Sudmant, Erin K Molloy, Erik Garrison, Craig B Lowe, Mario Ventura, Rachel J O'Neill, Sergey Koren, Kateryna D Makova, Adam M Phillippy, Evan E Eichler
Complete sequencing of ape genomes. bioRxiv : the preprint server for biology (2024)
DongAhn Yoo, Arang Rhie, Prajna Hebbar, Francesca Antonacci, Glennis A Logsdon, Steven Jared Solar, Dmitry Antipov, Brandon D Pickett, Yana Safonova, Francesco Montinaro, Yanting Luo, Joanna Malukiewicz, Jessica M Storer, Jiadong Lin, Abigail N Sequeira, Riley J Mangan, Glenn Hickey, Graciela Monfort Anez, Parithi Balachandran, Anton Bankevich, Christine R Beck, Arjun Biddanda, Matthew Borchers, Gerard G Bouffard, Emry Brannan, Shelise Y Brooks, Lucia Carbone, Laura Carrel, Yongwook Choi, Juyun Crawford, Mark Diekhans, Eric Engelbrecht, Cedric Feschotte, Giulio Formenti, Gage H Garcia, Luciana de Gennaro, David M Gilbert, Richard E Green, Andrea Guarracino, Ishaan Gupta, Diana Haddad, Junmin Han, Robert S Harris, Gabrielle A Hartley, William T Harvey, Michael Hiller, Kendra Hoekzema, Marlys L Houck, Hyeonsoo Jeong, Kaivan Kamali, Manolis Kellis, Bryce Kille, Chul Lee, Youngho Lee, William D Lees, Alexandra P Lewis, Qiuhui Li, Mark Loftus, Yong Hwee Eddie Loh, Hailey Loucks, Jian Ma, Yafei Mao, Juan F I Martinez, Patrick Masterson, Rajiv C McCoy, Barbara McGrath, Sean McKinney, Britta S Meyer, Karen H Miga, Saswat Kumar Mohanty, Katherine M Munson, Karol Pal, Matthew W Pennell, Pavel A Pevzner, David Porubsky, Tamara Potapova, Francisca R Ringeling, Joana L Rocha, Oliver A Ryder, Samuel Sacco, Swati Saha, Takayo Sasaki, Michael C Schatz, Nicholas J Schork, Cole Shanks, Linnéa Smeds, Dongmin R Son, Cynthia Steiner, Alexander P Sweeten, Michael G Tassia, Françoise Thibaud-Nissen, Edmundo Torres-González, Mihir Trivedi, Wenjie Wei, Julie Wertz, Muyu Yang, Panpan Zhang, Shilong Zhang, Yang Zhang, Zhenmiao Zhang, Sarah A Zhao, Yixin Zhu, Erich D Jarvis, Jennifer L Gerton, Iker Rivas-González, Benedict Paten, Zachary Alfano Szpiech, Christian D Huber, Tobias L Lenz, Miriam K Konkel, Soojin V Yi, Stefan Canzar, Corey T Watson, Peter H Sudmant, Erin K Molloy, Erik Garrison, Craig B Lowe, Mario Ventura, Rachel J O'Neill, Sergey Koren, Kateryna D Makova, Adam M Phillippy, Evan E Eichler
Complete sequencing of ape genomes. bioRxiv : the preprint server for biology (2024)
Nicolae Sapoval, Yunxi Liu, Kristen D Curry, Bryce Kille, Wenyu Huang, Natalie Kokroko, Michael G Nute, Alona Tyshaieva, Alexander T Dilthey, Erin K Molloy, Todd J Treangen
Lightweight taxonomic profiling of long-read metagenomic datasets with Lemur and Magnet. bioRxiv : the preprint server for biology (2024)
Michael Xiangjiang Wang, Esther G Lou, Nicolae Sapoval, Eddie Kim, Prashant Bharadwaj Kalvapalle, Bryce Kille, R A Leo Elworth, Yunxi Liu, Yilei Fu, Lauren B Stadler, Todd J Treangen
Olivar: fully automated and variant aware primer design for multiplex tiled amplicon sequencing of pathogen genomes. bioRxiv : the preprint server for biology (2023)
Michael Xiangjiang Wang, Esther G Lou, Nicolae Sapoval, Eddie Kim, Prashant Bharadwaj Kalvapalle, Bryce Kille, R A Leo Elworth, Yunxi Liu, Yilei Fu, Lauren B Stadler, Todd J Treangen
Olivar: fully automated and variant aware primer design for multiplex tiled amplicon sequencing of pathogen genomes. bioRxiv : the preprint server for biology (2023)
Michael Xiangjiang Wang, Esther G Lou, Nicolae Sapoval, Eddie Kim, Prashant Bharadwaj Kalvapalle, Bryce Kille, R A Leo Elworth, Yunxi Liu, Yilei Fu, Lauren B Stadler, Todd J Treangen
Olivar: fully automated and variant aware primer design for multiplex tiled amplicon sequencing of pathogen genomes. bioRxiv : the preprint server for biology (2023)
Ronan W O'Connell, Kshitij Rai, Trenton C Piepergerdes, Kian D Samra, Jack A Wilson, Shujian Lin, Thomas H Zhang, Eduardo M Ramos, Andrew Sun, Bryce Kille, Kristen D Curry, Jason W Rocks, Todd J Treangen, Pankaj Mehta, Caleb J Bashor
Ultra-high throughput mapping of genetic design space. bioRxiv : the preprint server for biology (2023)
Advait Balaji, Bryce Kille, Anthony D Kappell, Gene D Godbold, Madeline Diep, R A Leo Elworth, Zhiqin Qian, Dreycey Albin, Daniel J Nasko, Nidhi Shah, Mihai Pop, Santiago Segarra, Krista L Ternus, Todd J Treangen
SeqScreen: accurate and sensitive functional screening of pathogenic sequences via ensemble learning. Genome biology 23 (1) (2022)
Yunxi Liu, Joshua Kearney, Medhat Mahmoud, Bryce Kille, Fritz J Sedlazeck, Todd J Treangen
Rescuing Low Frequency Variants within Intra-Host Viral Populations directly from Oxford Nanopore sequencing data. bioRxiv : the preprint server for biology (2021)