Olivier Gevaert (O Gevaert)

Scopus Author ID ORCID

Publication Activity (10 Years)

Years Active: 2017-2024
Publications (10 Years): 54

Top Venues

NPJ digital medicine

bioRxiv : the preprint server for biology

medRxiv : the preprint server for health sciences

Communications medicine

Stanford University

Katholieke Universiteit Leuven (PHD)

This page only lists publications with an associated author ORCID identifier.

Affiliation History

Stanford University

United States

Assistant Professor :: Medicine

Education History

Katholieke Universiteit Leuven Sep 01 2004 - Dec 08 2009

Belgium

PHD :: Electrical Engineering

Publications

Ahmet Görkem Er, Daisy Yi Ding, Berrin Er, Mertcan Uzun, Mehmet Cakmak, Christoph Sadee, Gamze Durhan, Mustafa Nasuh Özmen, Mine Durusu Tanriover, Arzu Topeli, Yesim Aydin Son, Robert Tibshirani, Serhat Unal, Olivier Gevaert
Multimodal data fusion using sparse canonical correlation analysis and cooperative learning: a COVID-19 cohort study. NPJ digital medicine 7 (1) (2024)
Mahyar Abbasian, Elahe Khatibi, Iman Azimi, David Oniani, Zahra Shakeri Hossein Abad, Alexander H Thieme, Ram Sriram, Zhongqi Yang, Yanshan Wang, Bryant Y Lin, Olivier Gevaert, Li-Jia Li, Ramesh Jain, Amir M Rahmani
Foundation metrics for evaluating effectiveness of healthcare conversations powered by generative AI. NPJ digital medicine 7 (1) (2024)
Ahmet Görkem Er, Daisy Yi Ding, Berrin Er, Mertcan Uzun, Mehmet Cakmak, Christoph Sadee, Gamze Durhan, Mustafa Nasuh Özmen, Mine Durusu Tanriover, Arzu Topeli, Yesim Aydin Son, Robert Tibshirani, Serhat Unal, Olivier Gevaert
Multimodal data fusion using sparse canonical correlation analysis and cooperative learning: a COVID-19 cohort study. NPJ digital medicine 7 (1) (2024)
Mahyar Abbasian, Elahe Khatibi, Iman Azimi, David Oniani, Zahra Shakeri Hossein Abad, Alexander H Thieme, Ram Sriram, Zhongqi Yang, Yanshan Wang, Bryant Y Lin, Olivier Gevaert, Li-Jia Li, Ramesh Jain, Amir M Rahmani
Foundation metrics for evaluating effectiveness of healthcare conversations powered by generative AI. NPJ digital medicine 7 (1) (2024)
Ahmet Görkem Er, Daisy Yi Ding, Berrin Er, Mertcan Uzun, Mehmet Cakmak, Christoph Sadee, Gamze Durhan, Mustafa Nasuh Özmen, Mine Durusu Tanriover, Arzu Topeli, Yesim Aydin Son, Robert Tibshirani, Serhat Unal, Olivier Gevaert
Multimodal data fusion using sparse canonical correlation analysis and cooperative learning: a COVID-19 cohort study. NPJ digital medicine 7 (1) (2024)
Uxía Veleiro, Jesús de la Fuente, Guillermo Serrano, Marija Pizurica, Mikel Casals, Antonio Pineda-Lucena, Silve Vicent, Idoia Ochoa, Olivier Gevaert, Mikel Hernaez
GeNNius: an ultrafast drug-target interaction inference method based on graph neural networks. Bioinformatics (Oxford, England) 40 (1) (2024)
Ahmet Görkem Er, Daisy Yi Ding, Berrin Er, Mertcan Uzun, Mehmet Cakmak, Christoph Sadee, Gamze Durhan, Mustafa Nasuh Özmen, Mine Durusu Tanriover, Arzu Topeli, Yesim Aydin Son, Robert Tibshirani, Serhat Unal, Olivier Gevaert
Multimodal data fusion using sparse canonical correlation analysis and cooperative learning: a COVID-19 cohort study. NPJ digital medicine 7 (1) (2024)
Francisco Carrillo, Eric M Cramer, Marija Pizurica, Noemi Andor, Olivier Gevaert
Towards Digital Quantification of Ploidy from Pan-Cancer Digital Pathology Slides using Deep Learning. bioRxiv : the preprint server for biology (2024)
Tiffany Eulalio, Min Woo Sun, Olivier Gevaert, Michael D Greicius, Thomas J Montine, Daniel Nachun, Stephen B Montgomery
regionalpcs : improved discovery of DNA methylation associations with complex traits. bioRxiv : the preprint server for biology (2024)
Uxía Veleiro, Jesús de la Fuente, Guillermo Serrano, Marija Pizurica, Mikel Casals, Antonio Pineda-Lucena, Silve Vicent, Idoia Ochoa, Olivier Gevaert, Mikel Hernaez
GeNNius: an ultrafast drug-target interaction inference method based on graph neural networks. Bioinformatics (Oxford, England) 40 (1) (2024)
Uxía Veleiro, Jesús de la Fuente, Guillermo Serrano, Marija Pizurica, Mikel Casals, Antonio Pineda-Lucena, Silve Vicent, Idoia Ochoa, Olivier Gevaert, Mikel Hernaez
GeNNius: an ultrafast drug-target interaction inference method based on graph neural networks. Bioinformatics (Oxford, England) 40 (1) (2024)
Mahyar Abbasian, Elahe Khatibi, Iman Azimi, David Oniani, Zahra Shakeri Hossein Abad, Alexander H Thieme, Ram Sriram, Zhongqi Yang, Yanshan Wang, Bryant Y Lin, Olivier Gevaert, Li-Jia Li, Ramesh Jain, Amir M Rahmani
Foundation metrics for evaluating effectiveness of healthcare conversations powered by generative AI. NPJ digital medicine 7 (1) (2024)
Francisco Carrillo-Perez, Marija Pizurica, Yuanning Zheng, Tarak Nath Nandi, Ravi K Madduri, Jeanne Shen, Olivier Gevaert
Generation of synthetic whole-slide image tiles of tumours from RNA-sequencing data via cascaded diffusion models. Nature biomedical engineering (2024)
Tiffany Eulalio, Min Woo Sun, Olivier Gevaert, Michael D Greicius, Thomas J Montine, Daniel Nachun, Stephen B Montgomery
regionalpcs : improved discovery of DNA methylation associations with complex traits. bioRxiv : the preprint server for biology (2024)
Akshay Swaminathan, Alexander L Ren, Janet Y Wu, Aarohi Bhargava-Shah, Ivan Lopez, Ujwal Srivastava, Vassilis Alexopoulos, Rebecca Pizzitola, Brandon Bui, Layth Alkhani, Susan Lee, Nathan Mohit, Noel Seo, Nicholas Macedo, Winson Cheng, William Wang, Edward Tran, Reena Thomas, Olivier Gevaert
Extraction of Unstructured Electronic Health Records to Evaluate Glioblastoma Treatment Patterns. JCO clinical cancer informatics 8 (2024)
Francisco Carrillo-Perez, Marija Pizurica, Yuanning Zheng, Tarak Nath Nandi, Ravi K Madduri, Jeanne Shen, Olivier Gevaert
Generation of synthetic whole-slide image tiles of tumours from RNA-sequencing data via cascaded diffusion models. Nature biomedical engineering (2024)
Sandra Steyaert, Yeping Lina Qiu, Yuanning Zheng, Pritam Mukherjee, Hannes Vogel, Olivier Gevaert
Multimodal deep learning to predict prognosis in adult and pediatric brain tumors. Communications medicine 3 (1) (2023)
Yuanning Zheng, Marija Pizurica, Francisco Carrillo-Perez, Humaira Noor, Wei Yao, Christian Wohlfart, Kathleen Marchal, Antoaneta Vladimirova, Olivier Gevaert
Digital profiling of cancer transcriptomes from histology images with grouped vision attention. bioRxiv : the preprint server for biology (2023)
Pritam Mukherjee, Anna Brezhneva, Sandy Napel, Olivier Gevaert
Early Detection of Lung Cancer in the NLST Dataset . medRxiv : the preprint server for health sciences (2023)
Yuanning Zheng, John Jun, Kevin Brennan, Olivier Gevaert
EpiMix: an integrative tool for epigenomic subtyping using DNA methylation. bioRxiv : the preprint server for biology (2023)
Sandra Steyaert, Yeping Lina Qiu, Yuanning Zheng, Pritam Mukherjee, Hannes Vogel, Olivier Gevaert
Multimodal deep learning to predict prognosis in adult and pediatric brain tumors. Communications medicine 3 (1) (2023)
Yuanning Zheng, Francisco Carrillo, Marija Pizurica, Dieter Henrik Heiland, Olivier Gevaert
Spatial cellular architecture predicts prognosis in glioblastoma. Nature communications 14 (1) (2023)
Heather M Selby, Pritam Mukherjee, Christopher Parham, Sachin B Malik, Olivier Gevaert, Sandy Napel, Rajesh P Shah
Performance of alternative manual and automated deep learning segmentation techniques for the prediction of benign and malignant lung nodules. Journal of medical imaging (Bellingham, Wash.) 10 (4) (2023)
Marija Pizurica, Maarten Larmuseau, Kim Van der Eecken, Louise de Schaetzen van Brienen, Francisco Carrillo, Simon Isphording, Nicolaas Lumen, Jo Van Dorpe, Piet Ost, Sofie L J Verbeke, Olivier Gevaert, Kathleen Marchal
Whole slide imaging-based prediction of TP53 mutations identifies an aggressive disease phenotype in prostate cancer. Cancer research (2023)
Chen Chen, June Ho Shin, Zhouqing Fang, Kevin Brennan, Nina B Horowitz, Kathleen L Pfaff, Emma L Welsh, Scott J Rodig, Olivier Gevaert, Or Gozani, Ravindra Uppaluri, John B Sunwoo
Targeting KDM2A Enhances T Cell Infiltration in NSD1-Deficient Head and Neck Squamous Cell Carcinoma. Cancer research (2023)
Akshay Swaminathan, Iván López, Rafael Antonio Garcia Mar, Tyler Heist, Tom McClintock, Kaitlin Caoili, Madeline Grace, Matthew Rubashkin, Michael N Boggs, Jonathan H Chen, Olivier Gevaert, David Mou, Matthew K Nock
Natural language processing system for rapid detection and intervention of mental health crisis chat messages. NPJ digital medicine 6 (1) (2023)
Akshay Swaminathan, Ivan Lopez, William Wang, Ujwal Srivastava, Edward Tran, Aarohi Bhargava-Shah, Janet Y Wu, Alexander L Ren, Kaitlin Caoili, Brandon Bui, Layth Alkhani, Susan Lee, Nathan Mohit, Noel Seo, Nicholas Macedo, Winson Cheng, Charles Liu, Reena Thomas, Jonathan H Chen, Olivier Gevaert
Selective prediction for extracting unstructured clinical data. Journal of the American Medical Informatics Association : JAMIA (2023)
Francisco Carrillo, Marija Pizurica, Yuanning Zheng, Jeanne Shen, Olivier Gevaert
RNA-to-image multi-cancer synthesis using cascaded diffusion models. bioRxiv : the preprint server for biology (2023)
Yuanning Zheng, John Jun, Kevin Brennan, Olivier Gevaert
EpiMix: an integrative tool for epigenomic subtyping using DNA methylation. bioRxiv : the preprint server for biology (2023)
Ahmet Gorkem Er, Daisy Yi Ding, Berrin Er, Mertcan Uzun, Mehmet Cakmak, Christoph Sadee, Gamze Durhan, Mustafa Nasuh Ozmen, Mine Durusu Tanriover, Arzu Topeli, Yesim Aydin Son, Robert Tibshirani, Serhat Unal, Olivier Gevaert
Multimodal Biomedical Data Fusion Using Sparse Canonical Correlation Analysis and Cooperative Learning: A Cohort Study on COVID-19. Research square (2023)
Pritam Mukherjee, Anna Brezhneva, Sandy Napel, Olivier Gevaert
Early Detection of Lung Cancer in the NLST Dataset . medRxiv : the preprint server for health sciences (2023)
Sandra Steyaert, Yeping Lina Qiu, Yuanning Zheng, Pritam Mukherjee, Hannes Vogel, Olivier Gevaert
Multimodal deep learning to predict prognosis in adult and pediatric brain tumors. Communications medicine 3 (1) (2023)
Francisco Carrillo, Juan Carlos Morales, Daniel Castillo, Olivier Gevaert, Ignacio Rojas, Luis Javier Herrera
Machine-Learning-Based Late Fusion on Multi-Omics and Multi-Scale Data for Non-Small-Cell Lung Cancer Diagnosis. Journal of personalized medicine 12 (4) (2022)
Marie Humbert-Droz, Jessica Corley, Suzanne Tamang, Olivier Gevaert
Development and validation of MedDRA Tagger: a tool for extraction and structuring medical information from clinical notes. medRxiv : the preprint server for health sciences (2022)
Roxana Daneshjou, Kailas Vodrahalli, Roberto A Novoa, Melissa Jenkins, Weixin Liang, Veronica M Rotemberg, Justin Ko, Susan M Swetter, Elizabeth E Bailey, Olivier Gevaert, Pritam Mukherjee, Michelle Phung, Kiana Yekrang, Bradley Fong, Rachna Sahasrabudhe, Johan A C Allerup, Utako Okata-Karigane, James Zou, Albert S Chiou
Disparities in dermatology AI performance on a diverse, curated clinical image set. Science advances 8 (32) (2022)
Marie Humbert-Droz, Pritam Mukherjee, Olivier Gevaert
Strategies to Address the Lack of Labeled Data for Supervised Machine Learning Training With Electronic Health Records: Case Study for the Extraction of Symptoms From Clinical Notes. JMIR medical informatics 10 (3) (2022)
Shrey S Sukhadia, Aayush Tyagi, Vivek Venkataraman, Pritam Mukherjee, Pratosh Prasad, Olivier Gevaert, Shivashankar H Nagaraj
ImaGene: a web-based software platform for tumor radiogenomic evaluation and reporting. Bioinformatics advances 2 (1) (2022)
Marie Humbert-Droz, Jessica Corley, Suzanne Tamang, Olivier Gevaert
Development and validation of MedDRA Tagger: a tool for extraction and structuring medical information from clinical notes. medRxiv : the preprint server for health sciences (2022)
Sabrina H Rossi, Izzy Newsham, Sara Pita, Kevin Brennan, Gahee Park, Christopher G Smith, Radoslaw P Lach, Thomas J Mitchell, Junfan Huang, Anne Babbage, Anne Y Warren, John T Leppert, Grant D Stewart, Olivier Gevaert, Charles E Massie, Shamith A Samarajiwa
Accurate detection of benign and malignant renal tumor subtypes with MethylBoostER: An epigenetic marker-driven learning framework. Science advances 8 (39) (2022)
Shrey S Sukhadia, Aayush Tyagi, Vivek Venkataraman, Pritam Mukherjee, Pratosh Prasad, Olivier Gevaert, Shivashankar H Nagaraj
ImaGene: a web-based software platform for tumor radiogenomic evaluation and reporting. Bioinformatics advances 2 (1) (2022)
Shrey S Sukhadia, Aayush Tyagi, Vivek Venkataraman, Pritam Mukherjee, Pratosh Prasad, Olivier Gevaert, Shivashankar H Nagaraj
ImaGene: a web-based software platform for tumor radiogenomic evaluation and reporting. Bioinformatics advances 2 (1) (2022)
Rajesh P Shah, Heather M Selby, Pritam Mukherjee, Shefali Verma, Peiyi Xie, Qinmei Xu, Millie Das, Sachin Malik, Olivier Gevaert, Sandy Napel
Machine Learning Radiomics Model for Early Identification of Small-Cell Lung Cancer on Computed Tomography Scans. JCO clinical cancer informatics 5 (2021)
Olivier Gevaert
Meta-learning reduces the amount of data needed to build AI models in oncology. British journal of cancer 125 (3) (2021)
Qinmei Xu, Xianghao Zhan, Zhen Zhou, Yiheng Li, Peiyi Xie, Shu Zhang, Xiuli Li, Yizhou Yu, Changsheng Zhou, Longjiang Zhang, Olivier Gevaert, Guang Ming Lu
AI-based analysis of CT images for rapid triage of COVID-19 patients. NPJ digital medicine 4 (1) (2021)
Hui Qu, Mu Zhou, Zhennan Yan, He Wang, Vinod K Rustgi, Shaoting Zhang, Olivier Gevaert, Dimitris N Metaxas
Genetic mutation and biological pathway prediction based on whole slide images in breast carcinoma using deep learning. NPJ precision oncology 5 (1) (2021)
Shaimaa Bakr, Olivier Gevaert, Bhavik N Patel, Andrew Kesselman, Rajesh Shah, Sandy Napel, Nishita Kothary
Interreader Variability in Semantic Annotation of Microvascular Invasion in Hepatocellular Carcinoma on Contrast-enhanced Triphasic CT Images. Radiology. Imaging cancer 2 (3) (2020)
Yeping Lina Qiu, Hong Zheng, Arnout Devos, Heather Selby, Olivier Gevaert
A meta-learning approach for genomic survival analysis. Nature communications 11 (1) (2020)
Pritam Mukherjee, Murilo B Cintra, Chao Huang, Mu Zhou, Shankuan Zhu, A Dimitrios Colevas, Nancy Fischbein, Olivier Gevaert
CT-based Radiomic Signatures for Predicting Histopathologic Features in Head and Neck Squamous Cell Carcinoma. Radiology. Imaging cancer 2 (3) (2020)
Kevin Brennan, Thomas J Metzner, Chia-Sui Kao, Charles E Massie, Grant D Stewart, Robert W Haile, James D Brooks, Megan P Hitchins, John T Leppert, Olivier Gevaert
Development of a DNA Methylation-Based Diagnostic Signature to Distinguish Benign Oncocytoma From Renal Cell Carcinoma. JCO precision oncology 4 (2020)
Majed Mohamed Magzoub, Marcos Prunello, Kevin Brennan, Olivier Gevaert
The impact of DNA methylation on the cancer proteome. PLoS computational biology 15 (7) (2019)
Michael Iv, M Zhou, Katie Shpanskaya, Sébastien Perreault, Z Wang, Eric Tranvinh, Bryan A Lanzman, Sridhar Vajapeyam, Nicholas A Vitanza, Paul Graham Fisher, Yoon-Jae Cho, Suzanne Laughlin, Vijay Ramsawami, Michael D Taylor, Samuel H Cheshier, Gerald A Grant, T Young Poussaint, Olivier Gevaert, Kristen W Yeom
MR Imaging-Based Radiomic Signatures of Distinct Molecular Subgroups of Medulloblastoma. AJNR. American journal of neuroradiology 40 (1) (2018)
Kevin Brennan, June Ho Shin, Joshua K Tay, Marcos Prunello, Andrew J Gentles, John B Sunwoo, Olivier Gevaert
NSD1 inactivation defines an immune cold, DNA hypomethylated subtype in squamous cell carcinoma. Scientific reports 7 (1) (2017)
M Zhou, Jacob G Scott, B Chaudhury, Lawrence O Hall, Dmitry B Goldgof, Kristen W Yeom, Michael Iv, Yangming Ou, Jayashree Kalpathy-Cramer, Sandy Napel, Robert James Gillies, Olivier Gevaert, Robert A Gatenby
Radiomics in Brain Tumor: Image Assessment, Quantitative Feature Descriptors, and Machine-Learning Approaches. AJNR. American journal of neuroradiology 39 (2) (2017)
Mu Zhou, Ann Leung, Sebastian Echegaray, Andrew Gentles, Joseph B Shrager, Kristin C Jensen, Gerald J Berry, Sylvia K Plevritis, Daniel L Rubin, Sandy Napel, Olivier Gevaert
Non-Small Cell Lung Cancer Radiogenomics Map Identifies Relationships between Molecular and Imaging Phenotypes with Prognostic Implications. Radiology 286 (1) (2017)

Olivier Gevaert.css-eqlu8i{font-size:small;padding-left:4px;} (O Gevaert)

Publication Activity (10 Years)

Top Topics

Top Venues

Olivier Gevaert (O Gevaert)