Paolo Ribeca (P Ribeca)

Publication Activity (10 Years)

Years Active: 2015-2024
Publications (10 Years): 17

Top Topics

Genome Wide Association

Klebsiella Pneumoniae

Top Venues

Journal of virology

This page only lists publications with an associated author ORCID identifier.

Publications

Matthew P Moore, Mirjam Laager, Paolo Ribeca, Xavier Didelot
KmerAperture: Retaining k-mer synteny for alignment-free extraction of core and accessory differences between bacterial genomes. PLoS genetics 20 (4) (2024)
Matthew P Moore, Mirjam Laager, Paolo Ribeca, Xavier Didelot
KmerAperture: Retaining k-mer synteny for alignment-free extraction of core and accessory differences between bacterial genomes. PLoS genetics 20 (4) (2024)
Matthew P Moore, Mirjam Laager, Paolo Ribeca, Xavier Didelot
KmerAperture: Retaining k-mer synteny for alignment-free extraction of core and accessory differences between bacterial genomes. PLoS genetics 20 (4) (2024)
Ismar R Haga, Barbara B Shih, Gessica Tore, Noemi Polo, Paolo Ribeca, Delgerzul Gombo-Ochir, Gansukh Shura, Tsagaan Tserenchimed, Bazarragchaa Enkhbold, Dulam Purevtseren, Gerelmaa Ulziibat, Batchuluun Damdinjav, Lama Yimer, Fufa D Bari, Daniel Gizaw, Adeyinka Jeremy Adedeji, Rebecca Bitiyong Atai, Jolly Amoche Adole, Banenat Bajehson Dogonyaro, Pradeep Lakpriya Kumarawadu, Carrie Batten, Amanda Corla, Graham L Freimanis, Chandana Tennakoon, Andrew Law, Samantha J Lycett, Tim Downing, Philippa M Beard
Sequencing and Analysis of Lumpy Skin Disease Virus Whole Genomes Reveals a New Viral Subgroup in West and Central Africa. Viruses 16 (4) (2024)
Ismar R Haga, Barbara B Shih, Gessica Tore, Noemi Polo, Paolo Ribeca, Delgerzul Gombo-Ochir, Gansukh Shura, Tsagaan Tserenchimed, Bazarragchaa Enkhbold, Dulam Purevtseren, Gerelmaa Ulziibat, Batchuluun Damdinjav, Lama Yimer, Fufa D Bari, Daniel Gizaw, Adeyinka Jeremy Adedeji, Rebecca Bitiyong Atai, Jolly Amoche Adole, Banenat Bajehson Dogonyaro, Pradeep Lakpriya Kumarawadu, Carrie Batten, Amanda Corla, Graham L Freimanis, Chandana Tennakoon, Andrew Law, Samantha J Lycett, Tim Downing, Philippa M Beard
Sequencing and Analysis of Lumpy Skin Disease Virus Whole Genomes Reveals a New Viral Subgroup in West and Central Africa. Viruses 16 (4) (2024)
Ismar R Haga, Barbara B Shih, Gessica Tore, Noemi Polo, Paolo Ribeca, Delgerzul Gombo-Ochir, Gansukh Shura, Tsagaan Tserenchimed, Bazarragchaa Enkhbold, Dulam Purevtseren, Gerelmaa Ulziibat, Batchuluun Damdinjav, Lama Yimer, Fufa D Bari, Daniel Gizaw, Adeyinka Jeremy Adedeji, Rebecca Bitiyong Atai, Jolly Amoche Adole, Banenat Bajehson Dogonyaro, Pradeep Lakpriya Kumarawadu, Carrie Batten, Amanda Corla, Graham L Freimanis, Chandana Tennakoon, Andrew Law, Samantha J Lycett, Tim Downing, Philippa M Beard
Sequencing and Analysis of Lumpy Skin Disease Virus Whole Genomes Reveals a New Viral Subgroup in West and Central Africa. Viruses 16 (4) (2024)
Luca Ferretti, Paolo Ribeca
Allelic Entropy and Times until Loss or Fixation of Neutral Polymorphisms. Genes 14 (9) (2023)
Paz Aranega-Bou, C Cornbill, Gillian Rodger, M Bird, Ginny Moore, A Roohi, Katie L Hopkins, Susan Hopkins, Paolo Ribeca, Nicole E Stoesser, Samuel Lipworth
Evaluation of Fourier Transform Infrared spectroscopy (IR Biotyper) as a complement to Whole genome sequencing (WGS) to characterise Enterobacter cloacae, Citrobacter freundii and Klebsiella pneumoniae isolates recovered from hospital sinks. medRxiv : the preprint server for health sciences (2023)
Nnaemeka Ndodo, Jonathan Ashcroft, Kuiama Lewandowski, Adesola Yinka-Ogunleye, Chimaobi Chukwu, Adama Ahmad, David J King, Afolabi Akinpelu, Carlos Maluquer de Motes, Paolo Ribeca, Rebecca P Sumner, Andrew Rambaut, Michael Chester, Thomas Maishman, Oluwafemi Bamidele, Nwando Mba, Olajumoke Babatunde, Olusola Aruna, Steven T Pullan, Benedict Gannon, Colin Stewart Brown, Chikwe Ihekweazu, Ifedayo M O Adetifa, David O Ulaeto
Distinct monkeypox virus lineages co-circulating in humans before 2022. Nature medicine (2023)
Joe Holley, Rebecca P Sumner, Sian Lant, Paolo Ribeca, David Ulaeto, Carlos Maluquer de Motes
Engineered Promoter-Switched Viruses Reveal the Role of Poxvirus Maturation Protein A26 as a Negative Regulator of Viral Spread. Journal of virology 95 (19) (2021)
Sharif Hala, Paolo Ribeca, Haya A Aljami, Suliman Abdallah Alsagaby, Ibrahim Qasim, Sarah C Gilbert, Naif Khalaf Al Harbi
Transcriptomic Profiling of Dromedary Camels Immunised with a MERS Vaccine Candidate. Veterinary sciences 8 (8) (2021)
Yashar Sadigh, Abdessamad Tahiri-Alaoui, Stephen Spatz, Venugopal Nair, Paolo Ribeca
Pervasive Differential Splicing in Marek's Disease Virus can Discriminate CVI-988 Vaccine Strain from RB-1B Very Virulent Strain in Chicken Embryonic Fibroblasts. Viruses 12 (3) (2020)
David J King, Graham Freimanis, Lidia Lasecka-Dykes, Amin Asfor, Paolo Ribeca, Ryan Waters, Donald P King, Emma Laing
A Systematic Evaluation of High-Throughput Sequencing Approaches to Identify Low-Frequency Single Nucleotide Variants in Viral Populations. Viruses 12 (10) (2020)
Luca Ferretti, Eva Perez-Martin, Fuquan Zhang, François Maree, Lin-Mari de Klerk-Lorist, Ockert Louis van Schalkwyk, Nicholas D Juleff, Bryan Charleston, Paolo Ribeca
Pervasive within-host recombination and epistasis as major determinants of the molecular evolution of the foot-and-mouth disease virus capsid. PLoS pathogens 16 (1) (2020)
Martí Cortey, Luca Ferretti, Eva Pérez-Martín, Fuquan Zhang, Lin-Mari de Klerk-Lorist, Katherine Scott, Graham Freimanis, Julian Seago, Paolo Ribeca, Louis van Schalkwyk, Nicholas D Juleff, Francois F Maree, Bryan Charleston
Persistent Infection of African Buffalo (Syncerus caffer) with Foot-and-Mouth Disease Virus: Limited Viral Evolution and No Evidence of Antibody Neutralization Escape. Journal of virology 93 (15) (2019)
Luca Ferretti, Antonello Di Nardo, Benjamin J Singer, Lidia Lasecka-Dykes, Grace Logan, Caroline F Wright, Eva Pérez-Martín, Donald P King, Tobias J Tuthill, Paolo Ribeca
Within-Host Recombination in the Foot-and-Mouth Disease Virus Genome. Viruses 10 (5) (2018)
Lukasz Roguski, Paolo Ribeca
CARGO: effective format-free compressed storage of genomic information. Nucleic acids research 44 (12) (2016)
Tyler S Alioto, Ivo Buchhalter, Sophia Derdak, Barbara Hutter, Matthew D Eldridge, Eivind Hovig, Lawrence E Heisler, Timothy A Beck, Jared T Simpson, Laurie Tonon, Anne-Sophie Sertier, Ann-Marie Patch, Natalie Jäger, Philip Ginsbach, Ruben M Drews, Nagarajan Paramasivam, Rolf Kabbe, Sasithorn Chotewutmontri, Nicolle Diessl, Christopher Previti, Sabine Schmidt, Benedikt Brors, Lars Feuerbach, Michael Heinold, Susanne Gröbner, Andrey Korshunov, Patrick S Tarpey, Adam P Butler, Jonathan Hinton, David Jones, Andrew Menzies, Keiran M Raine, Rebecca Shepherd, Lucy Stebbings, Jon W Teague, Paolo Ribeca, Francesc Castro Giner, Sergi Beltran, Emanuele Raineri, Marc Dabad, Simon Charles Heath, Marta Gut, Robert E Denroche, Nicholas J Harding, Takafumi N Yamaguchi, Akihiro Fujimoto, Hidewaki Nakagawa, Víctor Quesada, Rafael Valdés-Mas, Sigve Nakken, Daniel Vodák, Lawrence Bower, Andrew G Lynch, Charlotte L Anderson, Nicola Waddell, John V Pearson, Sean M Grimmond, Myron Peto, Paul Spellman, Minghui He, Cyriac Kandoth, Semin Lee, John Zhang, Louis Létourneau, Singer Ma, Sahil B Seth, David Torrents, Liu Xi, David A Wheeler, Carlos López-Otín, Elías Campo, Peter J Campbell, Paul C Boutros, Xose S Puente, Daniela S Gerhard, Stefan M Pfister, John D McPherson, Thomas J Hudson, Matthias Schlesner, Peter Lichter, Roland Eils, David T W Jones, Ivo Glynne Gut
A comprehensive assessment of somatic mutation detection in cancer using whole-genome sequencing. Nature communications 6 (2015)