Luca Ferretti

Scopus Author ID ORCID

Publication Activity (10 Years)

Years Active: 2019-2024
Publications (10 Years): 36

Top Venues

Nature

Science (New York, N.Y.)

Viruses

Nature communications

University of Oxford

International School for Advanced Studies (PHD)

This page only lists publications with an associated author ORCID identifier.

Affiliation History

University of Oxford Dec 19 2018

United Kingdom

Senior Researcher :: Big Data Institute

Pirbright Institute Feb 01 2015 - Dec 18 2018

United Kingdom

Reseach Scientist :: Integrative Biology

Université Pierre et Marie Curie Feb 01 2013 - Jan 31 2015

France

Postdoc :: UMR 7138

Education History

International School for Advanced Studies Oct 04 2004 - Sep 17 2008

Italy

PHD :: Elementary Particle Physics

Publications

Zengmiao Wang, Peng Yang, Ruixue Wang, Luca Ferretti, Lele Zhao, Shan Pei, Xiaoli Wang, Lei Jia, Daitao Zhang, Yonghong Liu, Ziyan Liu, Quan-Yi Wang, Christophe Fraser, Huaiyu Tian
Estimating the contribution of setting-specific contacts to SARS-CoV-2 transmission using digital contact tracing data. Nature communications 15 (1) (2024)
Zengmiao Wang, Peng Yang, Ruixue Wang, Luca Ferretti, Lele Zhao, Shan Pei, Xiaoli Wang, Lei Jia, Daitao Zhang, Yonghong Liu, Ziyan Liu, Quan-Yi Wang, Christophe Fraser, Huaiyu Tian
Estimating the contribution of setting-specific contacts to SARS-CoV-2 transmission using digital contact tracing data. Nature communications 15 (1) (2024)
Michelle Kendall, Luca Ferretti, Chris Wymant, Daphne Tsallis, James Ian Mackie Petrie, Andrea Di Francia, Francesco Di Lauro, Lucie Abeler-Dörner, Harrison Manley, Jasmina Panovska-Griffiths, Alice Ledda, Xavier Didelot, Christophe Fraser
Drivers of epidemic dynamics in real time from daily digital COVID-19 measurements. Science (New York, N.Y.) 385 (6710) (2024)
Mahan Ghafari, Matthew D Hall, Tanya Golubchik, Daniel Ayoubkhani, Thomas A House, George MacIntyre-Cockett, Helen R Fryer, Laura Thomson, Anel Nurtay, Steven A Kemp, Luca Ferretti, David Buck, Angie Green, Amy Trebes, Paolo Piazza, Lorne J Lonie, Ruth Studley, Emma Rourke, Darren L Smith, Matthew Bashton, Andrew Nelson, Matthew Crown, Clare McCann, Gregory R Young, Rui Andre Nunes Dos Santos, Zack Richards, Mohammad Adnan Tariq, Roberto Cahuantzi, null null, null null, null null, Jeffrey C Barrett, Christophe Fraser, David Bonsall, Ann Sarah Walker, Katrina A Lythgoe
Prevalence of persistent SARS-CoV-2 in a large community surveillance study. Nature 626 (8001) (2024)
Mahan Ghafari, Matthew D Hall, Tanya Golubchik, Daniel Ayoubkhani, Thomas A House, George MacIntyre-Cockett, Helen R Fryer, Laura Thomson, Anel Nurtay, Steven A Kemp, Luca Ferretti, David Buck, Angie Green, Amy Trebes, Paolo Piazza, Lorne J Lonie, Ruth Studley, Emma Rourke, Darren L Smith, Matthew Bashton, Andrew Nelson, Matthew Crown, Clare McCann, Gregory R Young, Rui Andre Nunes Dos Santos, Zack Richards, Mohammad Adnan Tariq, Roberto Cahuantzi, null null, null null, null null, Jeffrey C Barrett, Christophe Fraser, David Bonsall, Ann Sarah Walker, Katrina A Lythgoe
Prevalence of persistent SARS-CoV-2 in a large community surveillance study. Nature 626 (8001) (2024)
Michelle Kendall, Luca Ferretti, Chris Wymant, Daphne Tsallis, James Ian Mackie Petrie, Andrea Di Francia, Francesco Di Lauro, Lucie Abeler-Dörner, Harrison Manley, Jasmina Panovska-Griffiths, Alice Ledda, Xavier Didelot, Christophe Fraser
Drivers of epidemic dynamics in real time from daily digital COVID-19 measurements. Science (New York, N.Y.) 385 (6710) (2024)
Mahan Ghafari, Matthew D Hall, Tanya Golubchik, Daniel Ayoubkhani, Thomas A House, George MacIntyre-Cockett, Helen R Fryer, Laura Thomson, Anel Nurtay, Steven A Kemp, Luca Ferretti, David Buck, Angie Green, Amy Trebes, Paolo Piazza, Lorne J Lonie, Ruth Studley, Emma Rourke, Darren L Smith, Matthew Bashton, Andrew Nelson, Matthew Crown, Clare McCann, Gregory R Young, Rui Andre Nunes Dos Santos, Zack Richards, Mohammad Adnan Tariq, Roberto Cahuantzi, null null, null null, null null, Jeffrey C Barrett, Christophe Fraser, David Bonsall, Ann Sarah Walker, Katrina A Lythgoe
Prevalence of persistent SARS-CoV-2 in a large community surveillance study. Nature 626 (8001) (2024)
Mahan Ghafari, Matthew D Hall, Tanya Golubchik, Daniel Ayoubkhani, Thomas A House, George MacIntyre-Cockett, Helen R Fryer, Laura Thomson, Anel Nurtay, Steven A Kemp, Luca Ferretti, David Buck, Angie Green, Amy Trebes, Paolo Piazza, Lorne J Lonie, Ruth Studley, Emma Rourke, Darren L Smith, Matthew Bashton, Andrew Nelson, Matthew Crown, Clare McCann, Gregory R Young, Rui Andre Nunes Dos Santos, Zack Richards, Mohammad Adnan Tariq, Roberto Cahuantzi, null null, null null, null null, Jeffrey C Barrett, Christophe Fraser, David Bonsall, Ann Sarah Walker, Katrina A Lythgoe
Prevalence of persistent SARS-CoV-2 in a large community surveillance study. Nature (2024)
Mahan Ghafari, Matthew D Hall, Tanya Golubchik, Daniel Ayoubkhani, Thomas A House, George MacIntyre-Cockett, Helen R Fryer, Laura Thomson, Anel Nurtay, Steven A Kemp, Luca Ferretti, David Buck, Angie Green, Amy Trebes, Paolo Piazza, Lorne J Lonie, Ruth Studley, Emma Rourke, Darren L Smith, Matthew Bashton, Andrew Nelson, Matthew Crown, Clare McCann, Gregory R Young, Rui Andre Nunes Dos Santos, Zack Richards, Mohammad Adnan Tariq, Roberto Cahuantzi, null null, null null, null null, Jeffrey C Barrett, Christophe Fraser, David Bonsall, Ann Sarah Walker, Katrina A Lythgoe
Prevalence of persistent SARS-CoV-2 in a large community surveillance study. Nature 626 (8001) (2024)
Michelle Kendall, Luca Ferretti, Chris Wymant, Daphne Tsallis, James Ian Mackie Petrie, Andrea Di Francia, Francesco Di Lauro, Lucie Abeler-Dörner, Harrison Manley, Jasmina Panovska-Griffiths, Alice Ledda, Xavier Didelot, Christophe Fraser
Drivers of epidemic dynamics in real time from daily digital COVID-19 measurements. Science (New York, N.Y.) (2024)
Mahan Ghafari, Matthew D Hall, Tanya Golubchik, Daniel Ayoubkhani, Thomas A House, George MacIntyre-Cockett, Helen R Fryer, Laura Thomson, Anel Nurtay, Steven A Kemp, Luca Ferretti, David Buck, Angie Green, Amy Trebes, Paolo Piazza, Lorne J Lonie, Ruth Studley, Emma Rourke, Darren L Smith, Matthew Bashton, Andrew Nelson, Matthew Crown, Clare McCann, Gregory R Young, Rui Andre Nunes Dos Santos, Zack Richards, Mohammad Adnan Tariq, Roberto Cahuantzi, null null, null null, null null, Jeffrey C Barrett, Christophe Fraser, David Bonsall, Ann Sarah Walker, Katrina A Lythgoe
Prevalence of persistent SARS-CoV-2 in a large community surveillance study. Nature 626 (8001) (2024)
Zengmiao Wang, Peng Yang, Ruixue Wang, Luca Ferretti, Lele Zhao, Shan Pei, Xiaoli Wang, Lei Jia, Daitao Zhang, Yonghong Liu, Ziyan Liu, Quan-Yi Wang, Christophe Fraser, Huaiyu Tian
Estimating the contribution of setting-specific contacts to SARS-CoV-2 transmission using digital contact tracing data. Nature communications 15 (1) (2024)
Luca Ferretti, Paolo Ribeca
Allelic Entropy and Times until Loss or Fixation of Neutral Polymorphisms. Genes 14 (9) (2023)
Luca Ferretti, Chris Wymant, James Ian Mackie Petrie, Daphne Tsallis, Michelle Kendall, Alice Ledda, Francesco Di Lauro, Adam Fowler, Andrea Di Francia, Jasmina Panovska-Griffiths, Lucie Abeler-Dörner, Marcos Charalambides, Mark Briers, Christophe Fraser
Digital measurement of SARS-CoV-2 transmission risk from 7 million contacts. Nature 626 (7997) (2023)
Angela Maria Rocchigiani, Luca Ferretti, Alice Ledda, Antonello Di Nardo, Matteo Floris, Piero Bonelli, Federica Loi, Maria Laura Idda, Pier Paolo Angioi, Susanna Zinellu, Mariangela Stefania Fiori, Roberto Bechere, Paola Capitta, Annamaria Coccollone, Elisabetta Coradduzza, Maria Antonietta Dettori, Maria Caterina Fattaccio, Elena Gallisai, Caterina Maestrale, Daniela Manunta, Aureliana Pedditzi, Ivana Piredda, Bruna Palmas, Sara Salza, Anna Maria Sechi, Barbara Tanda, Maria Paola Madrau, Maria Luisa Sanna, Simonetta Cherchi, Nicoletta Ponti, Giovanna Masala, Roberto Sirica, Eloisa Evangelista, Annalisa Oggiano, Giantonella Puggioni, Ciriaco Ligios, Silvia Dei Giudici
Origin, Genetic Variation and Molecular Epidemiology of SARS-CoV-2 Strains Circulating in Sardinia (Italy) during the First and Second COVID-19 Epidemic Waves. Viruses 15 (2) (2023)
Luca Ferretti, Chris Wymant, James Ian Mackie Petrie, Daphne Tsallis, Michelle Kendall, Alice Ledda, Francesco Di Lauro, Adam Fowler, Andrea Di Francia, Jasmina Panovska-Griffiths, Lucie Abeler-Dörner, Marcos Charalambides, Mark Briers, Christophe Fraser
Digital measurement of SARS-CoV-2 transmission risk from 7 million contacts. Nature 626 (7997) (2023)
Pascal P Klamser, Valeria d'Andrea, Francesco Di Lauro, Adrian Zachariae, Sebastiano Bontorin, Antonello Di Nardo, Matthew Hall, Benjamin F Maier, Luca Ferretti, Dirk Brockmann, Manlio De Domenico
Enhancing global preparedness during an ongoing pandemic from partial and noisy data. PNAS nexus 2 (6) (2023)
Luca Ferretti, Chris Wymant, James Ian Mackie Petrie, Daphne Tsallis, Michelle Kendall, Alice Ledda, Francesco Di Lauro, Adam Fowler, Andrea Di Francia, Jasmina Panovska-Griffiths, Lucie Abeler-Dörner, Marcos Charalambides, Mark Briers, Christophe Fraser
Digital measurement of SARS-CoV-2 transmission risk from 7 million contacts. Nature 626 (7997) (2023)
Luca Ferretti, Chris Wymant, James Ian Mackie Petrie, Daphne Tsallis, Michelle Kendall, Alice Ledda, Francesco Di Lauro, Adam Fowler, Andrea Di Francia, Jasmina Panovska-Griffiths, Lucie Abeler-Dörner, Marcos Charalambides, Mark Briers, Christophe Fraser
Digital measurement of SARS-CoV-2 transmission risk from 7 million contacts. Nature 626 (7997) (2023)
Luca Ferretti, Chris Wymant, James Ian Mackie Petrie, Daphne Tsallis, Michelle Kendall, Alice Ledda, Francesco Di Lauro, Adam Fowler, Andrea Di Francia, Jasmina Panovska-Griffiths, Lucie Abeler-Dörner, Marcos Charalambides, Mark Briers, Christophe Fraser
Digital measurement of SARS-CoV-2 transmission risk from 7 million contacts. Nature (2023)
Luca Ferretti, Chris Wymant, James Ian Mackie Petrie, Daphne Tsallis, Michelle Kendall, Alice Ledda, Francesco Di Lauro, Adam Fowler, Andrea Di Francia, Jasmina Panovska-Griffiths, Lucie Abeler-Dörner, Marcos Charalambides, Mark Briers, Christophe Fraser
Digital measurement of SARS-CoV-2 transmission risk from 7 million contacts. Nature (2023)
Angela Maria Rocchigiani, Luca Ferretti, Alice Ledda, Antonello Di Nardo, Matteo Floris, Piero Bonelli, Federica Loi, Maria Laura Idda, Pier Paolo Angioi, Susanna Zinellu, Mariangela Stefania Fiori, Roberto Bechere, Paola Capitta, Annamaria Coccollone, Elisabetta Coradduzza, Maria Antonietta Dettori, Maria Caterina Fattaccio, Elena Gallisai, Caterina Maestrale, Daniela Manunta, Aureliana Pedditzi, Ivana Piredda, Bruna Palmas, Sara Salza, Anna Maria Sechi, Barbara Tanda, Maria Paola Madrau, Maria Luisa Sanna, Simonetta Cherchi, Nicoletta Ponti, Giovanna Masala, Roberto Sirica, Eloisa Evangelista, Annalisa Oggiano, Giantonella Puggioni, Ciriaco Ligios, Silvia Dei Giudici
Origin, Genetic Variation and Molecular Epidemiology of SARS-CoV-2 Strains Circulating in Sardinia (Italy) during the First and Second COVID-19 Epidemic Waves. Viruses 15 (2) (2023)
Luca Ferretti, Chris Wymant, James Ian Mackie Petrie, Daphne Tsallis, Michelle Kendall, Alice Ledda, Francesco Di Lauro, Adam Fowler, Andrea Di Francia, Jasmina Panovska-Griffiths, Lucie Abeler-Dörner, Marcos Charalambides, Mark Briers, Christophe Fraser
Digital measurement of SARS-CoV-2 transmission risk from 7 million contacts. Nature 626 (7997) (2023)
Sebastian E Ramos-Onsins, Giacomo Marmorini, Guillaume Achaz, Luca Ferretti
A General Framework for Neutrality Tests Based on the Site Frequency Spectrum. Genes 14 (9) (2023)
Luca Ferretti, Chris Wymant, James Ian Mackie Petrie, Daphne Tsallis, Michelle Kendall, Alice Ledda, Francesco Di Lauro, Adam Fowler, Andrea Di Francia, Jasmina Panovska-Griffiths, Lucie Abeler-Dörner, Marcos Charalambides, Mark Briers, Christophe Fraser
Digital measurement of SARS-CoV-2 transmission risk from 7 million contacts. Nature (2023)
Chris Wymant, Daniela Bezemer, François Blanquart, Luca Ferretti, Astrid Gall, Matthew D Hall, Tanya Golubchik, Margreet Bakker, Swee Hoe Ong, Lele Zhao, David G Bonsall, Mariateresa de Cesare, George MacIntyre-Cockett, Lucie Abeler-Dörner, Jan Albert, Norbert Bannert, Jacques Fellay, Mary Kathryn Grabowski, Barbara Gunsenheimer-Bartmeyer, Huldrych F Gunthard, Pia Kivelä, Roger D Kouyos, Oliver Laeyendecker, Laurence Meyer, Kholoud Porter, Matti Ristola, Ard van Sighem, Ben Berkhout, Paul Kellam, Marion Cornelissen, Peter Reiss, Christophe Fraser, null null, null null
A highly virulent variant of HIV-1 circulating in the Netherlands. Science (New York, N.Y.) 375 (6580) (2022)
Mariangela Stefania Fiori, Luca Ferretti, Antonello Di Nardo, Lele Zhao, Susanna Zinellu, Pier Paolo Angioi, Matteo Floris, Anna Maria Sechi, Stefano Denti, Stefano Cappai, Giulia Franzoni, Annalisa Oggiano, Silvia Dei Giudici
A Naturally Occurring Microhomology-Mediated Deletion of Three Genes in African Swine Fever Virus Isolated from Two Sardinian Wild Boars. Viruses 14 (11) (2022)
Lele Zhao, Matthew D Hall, Mariateresa de Cesare, George MacIntyre-Cockett, Katrina A Lythgoe, Christophe Fraser, David G Bonsall, Tanya Golubchik, null null, Luca Ferretti
The mutational spectrum of SARS-CoV-2 genomic and antigenomic RNA. Proceedings. Biological sciences 289 (1987) (2022)
Robert Hinch, William J M Probert, Anel Nurtay, Michelle Kendall, Chris Wymant, Matthew D Hall, Katrina Lythgoe, Ana Bulas Cruz, Lele Zhao, Andrea Stewart, Luca Ferretti, Daniel Montero, James Warren, Nicole Mather, Matthew Abueg, Neo Wu, Olivier Legat, Katie Bentley, Thomas Mead, Kelvin Van-Vuuren, Dylan Feldner-Busztin, Tommaso Ristori, Anthony Finkelstein, David G Bonsall, Lucie Abeler-Dörner, Christophe Fraser
OpenABM-Covid19-An agent-based model for non-pharmaceutical interventions against COVID-19 including contact tracing. PLoS computational biology 17 (7) (2021)
Mariangela Stefania Fiori, Luca Ferretti, Matteo Floris, Federica Loi, Antonello Di Nardo, Anna Maria Sechi, Anna Ladu, Graziella Puggioni, Daria Sanna, Fabio Scarpa, Maria Luisa Sanna, Maria Paola Madrau, Claudia Torresi, Roberto Sirica, Eloisa Evangelista, Annalisa Oggiano, Silvia Dei Giudici
First Genomic Evidence of Dual African Swine Fever Virus Infection: Case Report from Recent and Historical Outbreaks in Sardinia. Viruses 13 (11) (2021)
Katrina A Lythgoe, Matthew D Hall, Luca Ferretti, Mariateresa de Cesare, George MacIntyre-Cockett, Amy Trebes, Monique I Andersson, Newton Otecko, Emma Louise Wise, Nathan A Moore, Jessica Lynch, Stephen P Kidd, Nicholas Cortes, Matilde Mori, Rebecca Williams, Gabrielle Vernet, Anita Justice, Angie Green, Samuel M Nicholls, M Azim Ansari, Lucie Abeler-Dörner, Catrin E Moore, Timothy E A Peto, David W Eyre, Robert Shaw, Peter Simmonds, David Buck, John A Todd, null null, Thomas Richard Connor, Shirin Ashraf, Ana da Silva Filipe, James G Shepherd, Emma C Thomson, null null, David G Bonsall, Christophe Fraser, Tanya Golubchik
SARS-CoV-2 within-host diversity and transmission. Science (New York, N.Y.) 372 (6539) (2021)
Mariangela Stefania Fiori, Daria Sanna, Fabio Scarpa, Matteo Floris, Antonello Di Nardo, Luca Ferretti, Federica Loi, Stefano Cappai, Anna Maria Sechi, Pier Paolo Angioi, Susanna Zinellu, Roberto Sirica, Eloisa Evangelista, Marco Casu, Giulia Franzoni, Annalisa Oggiano, Silvia Dei Giudici
A Deeper Insight into Evolutionary Patterns and Phylogenetic History of ASFV Epidemics in Sardinia (Italy) through Extensive Genomic Sequencing. Viruses 13 (10) (2021)
Luca Ferretti, Chris Wymant, Michelle Kendall, Lele Zhao, Anel Nurtay, Lucie Abeler-Dörner, Michael Parker, David G Bonsall, Christophe Fraser
Quantifying SARS-CoV-2 transmission suggests epidemic control with digital contact tracing. Science (New York, N.Y.) 368 (6491) (2020)
Luca Ferretti, Eva Perez-Martin, Fuquan Zhang, François Maree, Lin-Mari de Klerk-Lorist, Ockert Louis van Schalkwyk, Nicholas D Juleff, Bryan Charleston, Paolo Ribeca
Pervasive within-host recombination and epistasis as major determinants of the molecular evolution of the foot-and-mouth disease virus capsid. PLoS pathogens 16 (1) (2020)
Luca Ferretti, Andrea Krämer-Eis, Philipp H Schiffer
Conserved Patterns in Developmental Processes and Phases, Rather than Genes, Unite the Highly Divergent Bilateria. Life (Basel, Switzerland) 10 (9) (2020)
Carla Giner-Delgado, Sergio Villatoro, Jon Lerga-Jaso, Magdalena Gayà-Vidal, Meritxell Oliva, David Castellano, Lorena Pantano, Bárbara D Bitarello, David Izquierdo, Isaac Noguera, Iñigo Olalde, Alejandra Delprat, Antoine Blancher, Carles Lalueza-Fox, Tõnu Esko, Paul F O'Reilly, Aida M Andrés, Luca Ferretti, Marta Puig, Mario Cáceres
Evolutionary and functional impact of common polymorphic inversions in the human genome. Nature communications 10 (1) (2019)

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Publication Activity (10 Years)

Top Topics

Top Venues

Luca Ferretti