Gary D Baider (Gary D Bader, Gary Bader)

ResearcherID Scopus Author ID ORCID

Publication Activity (10 Years)

Years Active: 2015-2024
Publications (10 Years): 90

Top Venues

Nature communications

Nature

Nature methods

F1000Research

University of Toronto

University of Toronto (PHD)

This page only lists publications with an associated author ORCID identifier.

Affiliation History

University of Toronto

Canada

Professor :: The Donnelly Centre

Education History

University of Toronto Sep 01 1998 - Oct 01 2002

Canada

PHD :: Biochemistry

McGill University Sep 01 1993 - Jun 01 1997

Canada

BSC :: Biochemistry

Publications

Jun Ma, Ronald Xie, Shamini Ayyadhury, Cheng Ge, Anubha Gupta, Ritu Gupta, Song Gu, Yao Zhang, Gihun Lee, Joonkee Kim, Wei Lou, Hao-Feng Li, Eric Upschulte, Timo Dickscheid, José Guilherme de Almeida, Yixin Wang, Lin Han, Xin Yang, Marco Labagnara, Vojislav Gligorovski, Maxime Scheder, Sahand Jamal Rahi, Carly Kempster, Alice Y Pollitt, Leon Espinosa, Tâm Mignot, Jan Moritz Middeke, Jan-Niklas Eckardt, Wangkai Li, Zhaoyang Li, Xiaochen Cai, Bizhe Bai, Noah F Greenwald, David Van Valen, Erin Weisbart, Beth A Cimini, Trevor Cheung, Oscar Brück, Gary D Baider, Bo Wang
The multimodality cell segmentation challenge: toward universal solutions. Nature methods 21 (6) (2024)
Thomas Wälchli, Moheb Ghobrial, Marc Schwab, Shigeki Takada, Hang Zhong, Samuel Suntharalingham, Sandra Vetiska, Daymé Rodrigues Gonzalez, Ruilin Wu, Hubert Rehrauer, Anuroopa Dinesh, Kai Yu, Edward L Y Chen, Jeroen Bisschop, Fiona Farnhammer, Ann Mansur, Joanna Kalucka, Itay Tirosh, Luca Regli, Karl Schaller, Karl Frei, Troy Ketela, Mark Bernstein, Paul Kongkham, Peter Carmeliet, Taufik A Valiante, Peter B Dirks, Mario L Suvà, Gelareh Zadeh, Viviane Tabar, Ralph Schlapbach, Hartland Warren Jackson, Katrien De Bock, Jason E Fish, Philippe P Monnier, Gary D Baider, Ivan Radovanovic
Single-cell atlas of the human brain vasculature across development, adulthood and disease. Nature 632 (8025) (2024)
Thomas Wälchli, Moheb Ghobrial, Marc Schwab, Shigeki Takada, Hang Zhong, Samuel Suntharalingham, Sandra Vetiska, Daymé Rodrigues Gonzalez, Ruilin Wu, Hubert Rehrauer, Anuroopa Dinesh, Kai Yu, Edward L Y Chen, Jeroen Bisschop, Fiona Farnhammer, Ann Mansur, Joanna Kalucka, Itay Tirosh, Luca Regli, Karl Schaller, Karl Frei, Troy Ketela, Mark Bernstein, Paul Kongkham, Peter Carmeliet, Taufik A Valiante, Peter B Dirks, Mario L Suvà, Gelareh Zadeh, Viviane Tabar, Ralph Schlapbach, Hartland Warren Jackson, Katrien De Bock, Jason E Fish, Philippe P Monnier, Gary D Baider, Ivan Radovanovic
Single-cell atlas of the human brain vasculature across development, adulthood and disease. Nature 632 (8025) (2024)
Delaram Pouyabahar, Tallulah Andrews, Gary D Baider
Interpretable single-cell factor decomposition using sciRED. bioRxiv : the preprint server for biology (2024)
Andreas Maier, Michael Hartung, Mark Abovsky, Klaudia Adamowicz, Gary D Baider, Sylvie Baier, David B Blumenthal, Jing Chen, Maria L Elkjaer, Carlos Garcia-Hernandez, Mohamed Helmy, Markus Hoffmann, Igor Jurisica, Max Kotlyar, Olga E Lazareva, Hagai Levi, Markus List, Sebastian Lobentanzer, Joseph Loscalzo, Noel Malod-Dognin, Quirin Manz, Julian Matschinske, Miles Mee, Mhaned Oubounyt, Chiara Pastrello, Alexander R Pico, Rudolf T Pillich, Julian M Poschenrieder, Dexter Pratt, Nataša Pržulj, Sepideh Sadegh, Julio Saez-Rodriguez, Suryadipto Sarkar, Gideon Shaked, Ron Shamir, Nico Trummer, Ugur Turhan, Rui-Sheng Wang, Olga I Zolotareva, Jan Baumbach
Drugst.One - a plug-and-play solution for online systems medicine and network-based drug repurposing. Nucleic acids research 52 (W1) (2024)
Thomas Wälchli, Moheb Ghobrial, Marc Schwab, Shigeki Takada, Hang Zhong, Samuel Suntharalingham, Sandra Vetiska, Daymé Rodrigues Gonzalez, Ruilin Wu, Hubert Rehrauer, Anuroopa Dinesh, Kai Yu, Edward L Y Chen, Jeroen Bisschop, Fiona Farnhammer, Ann Mansur, Joanna Kalucka, Itay Tirosh, Luca Regli, Karl Schaller, Karl Frei, Troy Ketela, Mark Bernstein, Paul Kongkham, Peter Carmeliet, Taufik A Valiante, Peter B Dirks, Mario L Suvà, Gelareh Zadeh, Viviane Tabar, Ralph Schlapbach, Hartland Warren Jackson, Katrien De Bock, Jason E Fish, Philippe P Monnier, Gary D Baider, Ivan Radovanovic
Single-cell atlas of the human brain vasculature across development, adulthood and disease. Nature 632 (8025) (2024)
Jun Ma, Ronald Xie, Shamini Ayyadhury, Cheng Ge, Anubha Gupta, Ritu Gupta, Song Gu, Yao Zhang, Gihun Lee, Joonkee Kim, Wei Lou, Hao-Feng Li, Eric Upschulte, Timo Dickscheid, José Guilherme de Almeida, Yixin Wang, Lin Han, Xin Yang, Marco Labagnara, Vojislav Gligorovski, Maxime Scheder, Sahand Jamal Rahi, Carly Kempster, Alice Y Pollitt, Leon Espinosa, Tâm Mignot, Jan Moritz Middeke, Jan-Niklas Eckardt, Wangkai Li, Zhaoyang Li, Xiaochen Cai, Bizhe Bai, Noah F Greenwald, David Van Valen, Erin Weisbart, Beth A Cimini, Trevor Cheung, Oscar Brück, Gary D Baider, Bo Wang
The multimodality cell segmentation challenge: toward universal solutions. Nature methods 21 (6) (2024)
Delaram Pouyabahar, Tallulah Andrews, Gary D Baider
Interpretable single-cell factor decomposition using sciRED. bioRxiv : the preprint server for biology (2024)
Gary D Baider, Delaram Pouyabahar, Tallulah S Andrews
Interpretable single-cell factor decomposition using sciRED. Research square (2024)
Gary D Baider, Delaram Pouyabahar, Tallulah S Andrews
Interpretable single-cell factor decomposition using sciRED. Research square (2024)
Andreas Maier, Michael Hartung, Mark Abovsky, Klaudia Adamowicz, Gary D Baider, Sylvie Baier, David B Blumenthal, Jing Chen, Maria L Elkjaer, Carlos Garcia-Hernandez, Mohamed Helmy, Markus Hoffmann, Igor Jurisica, Max Kotlyar, Olga E Lazareva, Hagai Levi, Markus List, Sebastian Lobentanzer, Joseph Loscalzo, Noel Malod-Dognin, Quirin Manz, Julian Matschinske, Miles Mee, Mhaned Oubounyt, Chiara Pastrello, Alexander R Pico, Rudolf T Pillich, Julian M Poschenrieder, Dexter Pratt, Nataša Pržulj, Sepideh Sadegh, Julio Saez-Rodriguez, Suryadipto Sarkar, Gideon Shaked, Ron Shamir, Nico Trummer, Ugur Turhan, Rui-Sheng Wang, Olga I Zolotareva, Jan Baumbach
Drugst.One - a plug-and-play solution for online systems medicine and network-based drug repurposing. Nucleic acids research (2024)
Jun Ma, Ronald Xie, Shamini Ayyadhury, Cheng Ge, Anubha Gupta, Ritu Gupta, Song Gu, Yao Zhang, Gihun Lee, Joonkee Kim, Wei Lou, Hao-Feng Li, Eric Upschulte, Timo Dickscheid, José Guilherme de Almeida, Yixin Wang, Lin Han, Xin Yang, Marco Labagnara, Vojislav Gligorovski, Maxime Scheder, Sahand Jamal Rahi, Carly Kempster, Alice Y Pollitt, Leon Espinosa, Tâm Mignot, Jan Moritz Middeke, Jan-Niklas Eckardt, Wangkai Li, Zhaoyang Li, Xiaochen Cai, Bizhe Bai, Noah F Greenwald, David Van Valen, Erin Weisbart, Beth A Cimini, Trevor Cheung, Oscar Brück, Gary D Baider, Bo Wang
The multimodality cell segmentation challenge: toward universal solutions. Nature methods 21 (6) (2024)
Jun Ma, Ronald Xie, Shamini Ayyadhury, Cheng Ge, Anubha Gupta, Ritu Gupta, Song Gu, Yao Zhang, Gihun Lee, Joonkee Kim, Wei Lou, Hao-Feng Li, Eric Upschulte, Timo Dickscheid, José Guilherme de Almeida, Yixin Wang, Lin Han, Xin Yang, Marco Labagnara, Vojislav Gligorovski, Maxime Scheder, Sahand Jamal Rahi, Carly Kempster, Alice Y Pollitt, Leon Espinosa, Tâm Mignot, Jan Moritz Middeke, Jan-Niklas Eckardt, Wangkai Li, Zhaoyang Li, Xiaochen Cai, Bizhe Bai, Noah F Greenwald, David Van Valen, Erin Weisbart, Beth A Cimini, Trevor Cheung, Oscar Brück, Gary D Baider, Bo Wang
The multimodality cell segmentation challenge: toward universal solutions. Nature methods (2024)
Thomas Wälchli, Moheb Ghobrial, Marc Schwab, Shigeki Takada, Hang Zhong, Samuel Suntharalingham, Sandra Vetiska, Daymé Rodrigues Gonzalez, Ruilin Wu, Hubert Rehrauer, Anuroopa Dinesh, Kai Yu, Edward L Y Chen, Jeroen Bisschop, Fiona Farnhammer, Ann Mansur, Joanna Kalucka, Itay Tirosh, Luca Regli, Karl Schaller, Karl Frei, Troy Ketela, Mark Bernstein, Paul Kongkham, Peter Carmeliet, Taufik A Valiante, Peter B Dirks, Mario L Suvà, Gelareh Zadeh, Viviane Tabar, Ralph Schlapbach, Hartland Warren Jackson, Katrien De Bock, Jason E Fish, Philippe P Monnier, Gary D Baider, Ivan Radovanovic
Single-cell atlas of the human brain vasculature across development, adulthood and disease. Nature (2024)
Andreas Maier, Michael Hartung, Mark Abovsky, Klaudia Adamowicz, Gary D Baider, Sylvie Baier, David B Blumenthal, Jing Chen, Maria L Elkjaer, Carlos Garcia-Hernandez, Mohamed Helmy, Markus Hoffmann, Igor Jurisica, Max Kotlyar, Olga E Lazareva, Hagai Levi, Markus List, Sebastian Lobentanzer, Joseph Loscalzo, Noel Malod-Dognin, Quirin Manz, Julian Matschinske, Miles Mee, Mhaned Oubounyt, Chiara Pastrello, Alexander R Pico, Rudolf T Pillich, Julian M Poschenrieder, Dexter Pratt, Nataša Pržulj, Sepideh Sadegh, Julio Saez-Rodriguez, Suryadipto Sarkar, Gideon Shaked, Ron Shamir, Nico Trummer, Ugur Turhan, Rui-Sheng Wang, Olga I Zolotareva, Jan Baumbach
Drugst.One - a plug-and-play solution for online systems medicine and network-based drug repurposing. Nucleic acids research 52 (W1) (2024)
Martin Golebiewski, Gary D Baider, Padraig Gleeson, Thomas E Gorochowski, Sarah M Keating, Matthias König, Chris J Myers, David P Nickerson, Björn Sommer, Dagmar Waltemath, Falk Schreiber
Specifications of standards in systems and synthetic biology: status, developments, and tools in 2024. Journal of integrative bioinformatics 21 (1) (2024)
Jun Ma, Ronald Xie, Shamini Ayyadhury, Cheng Ge, Anubha Gupta, Ritu Gupta, Song Gu, Yao Zhang, Gihun Lee, Joonkee Kim, Wei Lou, Hao-Feng Li, Eric Upschulte, Timo Dickscheid, José Guilherme de Almeida, Yixin Wang, Lin Han, Xin Yang, Marco Labagnara, Vojislav Gligorovski, Maxime Scheder, Sahand Jamal Rahi, Carly Kempster, Alice Y Pollitt, Leon Espinosa, Tâm Mignot, Jan Moritz Middeke, Jan-Niklas Eckardt, Wangkai Li, Zhaoyang Li, Xiaochen Cai, Bizhe Bai, Noah F Greenwald, David Van Valen, Erin Weisbart, Beth A Cimini, Trevor Cheung, Oscar Brück, Gary D Baider, Bo Wang
The multimodality cell segmentation challenge: toward universal solutions. Nature methods (2024)
Jun Ma, Ronald Xie, Shamini Ayyadhury, Cheng Ge, Anubha Gupta, Ritu Gupta, Song Gu, Yao Zhang, Gihun Lee, Joonkee Kim, Wei Lou, Hao-Feng Li, Eric Upschulte, Timo Dickscheid, José Guilherme de Almeida, Yixin Wang, Lin Han, Xin Yang, Marco Labagnara, Vojislav Gligorovski, Maxime Scheder, Sahand Jamal Rahi, Carly Kempster, Alice Y Pollitt, Leon Espinosa, Tâm Mignot, Jan Moritz Middeke, Jan-Niklas Eckardt, Wangkai Li, Zhaoyang Li, Xiaochen Cai, Bizhe Bai, Noah F Greenwald, David Van Valen, Erin Weisbart, Beth A Cimini, Trevor Cheung, Oscar Brück, Gary D Baider, Bo Wang
The multimodality cell segmentation challenge: toward universal solutions. Nature methods (2024)
Thomas Wälchli, Moheb Ghobrial, Marc Schwab, Shigeki Takada, Hang Zhong, Samuel Suntharalingham, Sandra Vetiska, Daymé Rodrigues Gonzalez, Ruilin Wu, Hubert Rehrauer, Anuroopa Dinesh, Kai Yu, Edward L Y Chen, Jeroen Bisschop, Fiona Farnhammer, Ann Mansur, Joanna Kalucka, Itay Tirosh, Luca Regli, Karl Schaller, Karl Frei, Troy Ketela, Mark Bernstein, Paul Kongkham, Peter Carmeliet, Taufik A Valiante, Peter B Dirks, Mario L Suvà, Gelareh Zadeh, Viviane Tabar, Ralph Schlapbach, Hartland Warren Jackson, Katrien De Bock, Jason E Fish, Philippe P Monnier, Gary D Baider, Ivan Radovanovic
Single-cell atlas of the human brain vasculature across development, adulthood and disease. Nature (2024)
Thomas Wälchli, Moheb Ghobrial, Marc Schwab, Shigeki Takada, Hang Zhong, Samuel Suntharalingham, Sandra Vetiska, Daymé Rodrigues Gonzalez, Ruilin Wu, Hubert Rehrauer, Anuroopa Dinesh, Kai Yu, Edward L Y Chen, Jeroen Bisschop, Fiona Farnhammer, Ann Mansur, Joanna Kalucka, Itay Tirosh, Luca Regli, Karl Schaller, Karl Frei, Troy Ketela, Mark Bernstein, Paul Kongkham, Peter Carmeliet, Taufik A Valiante, Peter B Dirks, Mario L Suvà, Gelareh Zadeh, Viviane Tabar, Ralph Schlapbach, Hartland Warren Jackson, Katrien De Bock, Jason E Fish, Philippe P Monnier, Gary D Baider, Ivan Radovanovic
Single-cell atlas of the human brain vasculature across development, adulthood and disease. Nature 632 (8025) (2024)
Thomas Wälchli, Moheb Ghobrial, Marc Schwab, Shigeki Takada, Hang Zhong, Samuel Suntharalingham, Sandra Vetiska, Daymé Rodrigues Gonzalez, Ruilin Wu, Hubert Rehrauer, Anuroopa Dinesh, Kai Yu, Edward L Y Chen, Jeroen Bisschop, Fiona Farnhammer, Ann Mansur, Joanna Kalucka, Itay Tirosh, Luca Regli, Karl Schaller, Karl Frei, Troy Ketela, Mark Bernstein, Paul Kongkham, Peter Carmeliet, Taufik A Valiante, Peter B Dirks, Mario L Suvà, Gelareh Zadeh, Viviane Tabar, Ralph Schlapbach, Hartland Warren Jackson, Katrien De Bock, Jason E Fish, Philippe P Monnier, Gary D Baider, Ivan Radovanovic
Single-cell atlas of the human brain vasculature across development, adulthood and disease. Nature 632 (8025) (2024)
Thomas Wälchli, Moheb Ghobrial, Marc Schwab, Shigeki Takada, Hang Zhong, Samuel Suntharalingham, Sandra Vetiska, Daymé Rodrigues Gonzalez, Ruilin Wu, Hubert Rehrauer, Anuroopa Dinesh, Kai Yu, Edward L Y Chen, Jeroen Bisschop, Fiona Farnhammer, Ann Mansur, Joanna Kalucka, Itay Tirosh, Luca Regli, Karl Schaller, Karl Frei, Troy Ketela, Mark Bernstein, Paul Kongkham, Peter Carmeliet, Taufik A Valiante, Peter B Dirks, Mario L Suvà, Gelareh Zadeh, Viviane Tabar, Ralph Schlapbach, Hartland Warren Jackson, Katrien De Bock, Jason E Fish, Philippe P Monnier, Gary D Baider, Ivan Radovanovic
Single-cell atlas of the human brain vasculature across development, adulthood and disease. Nature (2024)
Thomas Wälchli, Moheb Ghobrial, Marc Schwab, Shigeki Takada, Hang Zhong, Samuel Suntharalingham, Sandra Vetiska, Daymé Rodrigues Gonzalez, Ruilin Wu, Hubert Rehrauer, Anuroopa Dinesh, Kai Yu, Edward L Y Chen, Jeroen Bisschop, Fiona Farnhammer, Ann Mansur, Joanna Kalucka, Itay Tirosh, Luca Regli, Karl Schaller, Karl Frei, Troy Ketela, Mark Bernstein, Paul Kongkham, Peter Carmeliet, Taufik A Valiante, Peter B Dirks, Mario L Suvà, Gelareh Zadeh, Viviane Tabar, Ralph Schlapbach, Hartland Warren Jackson, Katrien De Bock, Jason E Fish, Philippe P Monnier, Gary D Baider, Ivan Radovanovic
Single-cell atlas of the human brain vasculature across development, adulthood and disease. Nature 632 (8025) (2024)
Martin Golebiewski, Gary D Baider, Padraig Gleeson, Thomas E Gorochowski, Sarah M Keating, Matthias König, Chris J Myers, David P Nickerson, Björn Sommer, Dagmar Waltemath, Falk Schreiber
Specifications of standards in systems and synthetic biology: status, developments, and tools in 2024. Journal of integrative bioinformatics (2024)
Delaram Pouyabahar, Tallulah S Andrews, Gary D Baider
Interpretable single-cell factor decomposition using sciRED. Research square (2024)
Andreas Maier, Michael Hartung, Mark Abovsky, Klaudia Adamowicz, Gary D Baider, Sylvie Baier, David B Blumenthal, Jing Chen, Maria L Elkjaer, Carlos Garcia-Hernandez, Mohamed Helmy, Markus Hoffmann, Igor Jurisica, Max Kotlyar, Olga E Lazareva, Hagai Levi, Markus List, Sebastian Lobentanzer, Joseph Loscalzo, Noel Malod-Dognin, Quirin Manz, Julian Matschinske, Miles Mee, Mhaned Oubounyt, Chiara Pastrello, Alexander R Pico, Rudolf T Pillich, Julian M Poschenrieder, Dexter Pratt, Nataša Pržulj, Sepideh Sadegh, Julio Saez-Rodriguez, Suryadipto Sarkar, Gideon Shaked, Ron Shamir, Nico Trummer, Ugur Turhan, Rui-Sheng Wang, Olga I Zolotareva, Jan Baumbach
Drugst.One - a plug-and-play solution for online systems medicine and network-based drug repurposing. Nucleic acids research (2024)
Bin Li, Daniel Rodrigo-Torres, Carl Pelz, Brendan T Innes, Pamela Canaday, Sunghee Chai, Peter Zandstra, Gary D Baider, Markus Grompe
Cell networks in the mouse liver during partial hepatectomy. bioRxiv : the preprint server for biology (2023)
Max Franz, Christian T Lopes, Dylan Fong, Mike Kucera, Manfred Cheung, Metin Can Siper, Gerardo Huck, Yue Dong, Onur Sumer, Gary D Baider
Cytoscape.js 2023 update: a graph theory library for visualization and analysis. Bioinformatics (Oxford, England) 39 (1) (2023)
Parasvi S Patel, Arash Algouneh, Rehna Krishnan, John J Reynolds, Kevin C J Nixon, Jun Hao, Jihoon Lee, Yue Feng, Chehronai Fozil, Mia Stanic, Talya Yerlici, Peiran Su, Fraser Soares, Elisabeth Liedtke, Gil Prive, Gary D Baider, Miquel Angel Pujana, Karim Mekhail, Housheng Hansen He, Anne Hakem, Grant S Stewart, Razqallah Hakem
Excessive transcription-replication conflicts are a vulnerability of BRCA1-mutant cancers. Nucleic acids research (2023)
Max Franz, Christian T Lopes, Dylan Fong, Mike Kucera, Manfred Cheung, Metin Can Siper, Gerardo Huck, Yue Dong, Onur Sumer, Gary D Baider
Cytoscape.js 2023 update: a graph theory library for visualization and analysis. Bioinformatics (Oxford, England) 39 (1) (2023)
Suganth Suppiah, Sheila Mansouri, Yasin Mamatjan, Jeffrey C Liu, Minu M Bhunia, Vikas Patil, Prisni Rath, Bharati Mehani, Pardeep Heir, Severa Bunda, German L Velez-Reyes, Olivia Singh, Nazanin Ijad, Neda Pirouzmand, Tatyana Dalcourt, Ying Meng, Shirin Karimi, Qingxia Wei, Farshad Nassiri, Trevor J Pugh, Gary D Baider, Kenneth D Aldape, David A Largaespada, Gelareh Zadeh
Multiplatform molecular profiling uncovers two subgroups of malignant peripheral nerve sheath tumors with distinct therapeutic vulnerabilities. Nature communications 14 (1) (2023)
Suganth Suppiah, Sheila Mansouri, Yasin Mamatjan, Jeffrey C Liu, Minu M Bhunia, Vikas Patil, Prisni Rath, Bharati Mehani, Pardeep Heir, Severa Bunda, German L Velez-Reyes, Olivia Singh, Nazanin Ijad, Neda Pirouzmand, Tatyana Dalcourt, Ying Meng, Shirin Karimi, Qingxia Wei, Farshad Nassiri, Trevor J Pugh, Gary D Baider, Kenneth D Aldape, David A Largaespada, Gelareh Zadeh
Multiplatform molecular profiling uncovers two subgroups of malignant peripheral nerve sheath tumors with distinct therapeutic vulnerabilities. Nature communications 14 (1) (2023)
Max Franz, Christian T Lopes, Dylan Fong, Mike Kucera, Manfred Cheung, Metin Can Siper, Gerardo Huck, Yue Dong, Onur Sumer, Gary D Baider
Cytoscape.js 2023 update: a graph theory library for visualization and analysis. Bioinformatics (Oxford, England) 39 (1) (2023)
Max Franz, Christian T Lopes, Dylan Fong, Mike Kucera, Manfred Cheung, Metin Can Siper, Gerardo Huck, Yue Dong, Onur Sumer, Gary D Baider
Cytoscape.js 2023 update: a graph theory library for visualization and analysis. Bioinformatics (Oxford, England) 39 (1) (2023)
Paul M McKeever, Aiden M Sababi, Raghav Sharma, Nicholas Khuu, Zhiyu Xu, Shu Yi Shen, Shangxi Xiao, Philip McGoldrick, Elias Orouji, Troy Ketela, Christine Sato, Danielle Moreno, Naomi Visanji, Gabor G Kovacs, Julia Keith, Lorne Zinman, Ekaterina A Rogaeva, Hani Goodarzi, Gary D Baider, Janice Robertson
Single-nucleus multiomic atlas of frontal cortex in amyotrophic lateral sclerosis with a deep learning-based decoding of alternative polyadenylation mechanisms. bioRxiv : the preprint server for biology (2023)
Suganth Suppiah, Sheila Mansouri, Yasin Mamatjan, Jeffrey C Liu, Minu M Bhunia, Vikas Patil, Prisni Rath, Bharati Mehani, Pardeep Heir, Severa Bunda, German L Velez-Reyes, Olivia Singh, Nazanin Ijad, Neda Pirouzmand, Tatyana Dalcourt, Ying Meng, Shirin Karimi, Qingxia Wei, Farshad Nassiri, Trevor J Pugh, Gary D Baider, Kenneth D Aldape, David A Largaespada, Gelareh Zadeh
Multiplatform molecular profiling uncovers two subgroups of malignant peripheral nerve sheath tumors with distinct therapeutic vulnerabilities. Nature communications 14 (1) (2023)
Shraddha Pai, Shirley Hui, Philipp Weber, Soumil Narayan, Owen Whitley, Peipei Li, Viviane Labrie, Jan Baumbach, Anne L Wheeler, Gary D Baider
Multi-scale systems genomics analysis predicts pathways, cell types, and drug targets involved in normative variation in peri-adolescent human cognition. Cerebral cortex (New York, N.Y. : 1991) (2023)
Zhe Jiang, YoungJun Ju, Amjad Ali, Philip E D Chung, Patryk Skowron, Dong-Yu Wang, Mariusz Shrestha, Huiqin Li, Jeff C Liu, Ioulia Vorobieva, Ronak Ghanbari-Azarnier, Ethel Mwewa, Marianne Koritzinsky, Yaacov Ben-David, James R Woodgett, Charles M Perou, Adam J Dupuy, Gary D Baider, Sean E Egan, Michael D Taylor, Eldad Zacksenhaus
Distinct shared and compartment-enriched oncogenic networks drive primary versus metastatic breast cancer. Nature communications 14 (1) (2023)
Duncan T Forster, Sheena C Li, Yoko Yashiroda, Mami Yoshimura, Zhijian Li, Luis Alberto Vega Isuhuaylas, Kaori Itto-Nakama, Daisuke Yamanaka, Yoshikazu Ohya, Hiroyuki Osada, Bo Wang, Gary D Baider, Charles Boone
BIONIC: biological network integration using convolutions. Nature methods 19 (10) (2022)
Ellen Langille, Khalid N Al-Zahrani, Zhibo Ma, Minggao Liang, Liis Uusküla-Reimand, Roderic Espin Garcia, Katie Teng, Ahmad A Malik, Helga Bergholtz, Samah El Ghamrasni, Somaieh Afiuni-Zadeh, Ricky Tsai, Sana Alvi, Andrew J Elia, YiQing Lü, Robin Hyunseo Oh, Katelyn J Kozma, Daniel Trcka, Masahiro Narimatsu, Jeff C Liu, Thomas Nguyen, Seda Avcioglu Barutcu, Sampath Kumar Loganathan, Rod Bremner, Gary D Baider, Sean E Egan, David W Cescon, Therese Sørlie, Jeffrey L Wrana, Hartland Warren Jackson, Michael D Wilson, Agnieszka K Witkiewicz, Erik S Knudsen, Miguel Angel Pujana, Geoffrey M Wahl, Daniel Schramek
Loss of Epigenetic Regulation Disrupts Lineage Integrity, Induces Aberrant Alveogenesis, and Promotes Breast Cancer. Cancer discovery 12 (12) (2022)
Caitríona M McEvoy, Julia M Murphy, Lin Zhang, Sergi Clotet-Freixas, Jessica A Mathews, James An, Mehran Karimzadeh, Delaram Pouyabahar, Shenghui Su, Olga Zaslaver, Hannes L Röst, Rangi Arambewela, Lewis Y Liu, Sally Zhang, Keith A Lawson, Antonio Finelli, Bo Wang, Sonya A MacParland, Gary D Baider, Ana Konvalinka, Sarah Q Crome
Single-cell profiling of healthy human kidney reveals features of sex-based transcriptional programs and tissue-specific immunity. Nature communications 13 (1) (2022)
Martine Dumont, Nana Weber-Lassalle, Charles Joly-Beauparlant, Corinna Ernst, Arnaud Droit, Bing-Jian Feng, Stéphane Dubois, Annie-Claude Collin-Deschesnes, Penny Soucy, Maxime Vallée, Frédéric Fournier, Audrey Lemaçon, Muriel A Adank, Jamie Allen, Janine Altmüller, Norbert Arnold, Margreet G E M Ausems, Riccardo Berutti, Manjeet K Bolla, Shelley B Bull, Sara Carvalho, Sten Cornelissen, Michael R Dufault, Alison M Dunning, Christoph Engel, Andrea Gehrig, Willemina R R Geurts-Giele, Christian Gieger, Jessica Green, Karl Hackmann, Mohamed Helmy, Julia Hentschel, Frans B L Hogervorst, Antoinette Hollestelle, Maartje J Hooning, Judit Horváth, M Arfan Ikram, Silke Kaulfuß, Renske Keeman, Da Kuang, Craig Luccarini, Wolfgang Maier, John W M Martens, Dieter Niederacher, Peter Nürnberg, Claus-Eric Ott, Annette Peters, Paul D P Pharoah, Alfredo Ramirez, Juliane Ramser, Steffi Riedel-Heller, Gunnar Schmidt, Mitul Shah, Martin Scherer, Antje Stäbler, Tim M Strom, Christian Sutter, Holger Thiele, Christi J van Asperen, Lizet van der Kolk, Rob B van der Luijt, Alexander E Volk, Michael Wagner, Quinten Waisfisz, Qin Wang, Shan Wang-Gohrke, Bernhard Heinrich Friedrich Weber, null Genome Of The Netherlands Project, null Ghs Study Group, Peter Devilee, Sean Tavtigian, Gary D Baider, Alfons Meindl, David E Goldgar, Irene L Andrulis, Rita K Schmutzler, Douglas F Easton, Marjanka K Schmidt, Eric Hahnen, Jacques Simard
Uncovering the Contribution of Moderate-Penetrance Susceptibility Genes to Breast Cancer by Whole-Exome Sequencing and Targeted Enrichment Sequencing of Candidate Genes in Women of European Ancestry. Cancers 14 (14) (2022)
Zhe Jiang, Huiqin Li, Stephanie A Schroer, Veronique Voisin, YoungJun Ju, Marek Pacal, Natalie Erdmann, Wei Shi, Philip E D Chung, Tao Deng, Nien-Jung Chen, Giovanni Ciavarra, Alessandro Datti, Tak W Mak, Lea Harrington, Frederick A Dick, Gary D Baider, Rod Bremner, Minna Woo, Eldad Zacksenhaus
Hypophosphorylated pRb knock-in mice exhibit hallmarks of aging and vitamin C-preventable diabetes. The EMBO journal 41 (4) (2022)
Brandon T Wesley, Alexander D B Ross, Daniele Muraro, Zhichiao Miao, Sarah H Saxton, Rute A Tomaz, Carola M Morell, Katherine Ridley, Ekaterini D Zacharis, Sandra Petrus-Reurer, Judith Kraiczy, Krishnaa T A Mahbubani, Stephanie Brown, Jose Garcia-Bernardo, Clara Alsinet, Daniel J Gaffney, Dave Horsfall, Olivia C Tysoe, Rachel Anne Botting, Emily Stephenson, Dorin-Mirel Popescu, Sonya A MacParland, Gary D Baider, Ian D McGilvray, Daniel Ortmann, Fotios Sampaziotis, Kourosh Saeb Parsy, Muzlifah A Haniffa, Kelly R Stevens, Matthias Zilbauer, Sarah A Teichmann, Ludovic Vallier
Single-cell atlas of human liver development reveals pathways directing hepatic cell fates. Nature cell biology 24 (10) (2022)
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Ding, Nina Ditsch, Kimberly F Doheny, Susan M Domchek, Cecilia M Dorfling, Thilo Dörk, Isabel Dos-Santos-Silva, Stéphane Dubois, Pierre-Antoine Dugué, Martine Dumont, Alison M Dunning, Lorraine Durcan, Miriam Dwek, Bernd Dworniczak, Diana Eccles, Ros Eeles, Hans Ehrencrona, Ursula Eilber, Bent Ejlertsen, Arif B Ekici, A Heather Eliassen, null null, Christoph Engel, Mikael Eriksson, Laura Fachal, Laurence Faivre, Peter A Fasching, Ulrike Faust, Jonine Figueroa, Dieter Flesch-Janys, Olivia Fletcher, Henrik Flyger, William D Foulkes, Eitan Friedman, Lin Fritschi, Debra Frost, Marike Gabrielson, Pragna Gaddam, Marilie D Gammon, Patricia A Ganz, Susan M Gapstur, Judy Garber, Vanesa Garcia-Barberan, José A García-Sáenz, Mia M Gaudet, Marion Gauthier-Villars, Andrea Gehrig, null null, Vassilios Georgoulias, Anne-Marie Gerdes, Graham G Giles, Gord Glendon, Andrew K Godwin, Mark S Goldberg, David E Goldgar, Anna González-Neira, Paul Goodfellow, Mark H Greene, Grethe I Grenaker Alnæs, Mervi Grip, Jacek Gronwald, Anne Grundy, Daphne Gschwantler-Kaulich, Pascal Guénel, Qi Guo, Lothar Haeberle, Eric Hahnen, Christopher A Haiman, Niclas Håkansson, Emily Hallberg, Ute Hamann, Nathalie Hamel, Susan Hankinson, Thomas V O Hansen, Patricia Harrington, Steven N Hart, Jaana M Hartikainen, Catherine S Healey, null null, Alexander Hein, Sonja Helbig, Alex Henderson, Jane Heyworth, Belynda Hicks, Peter Hillemanns, Shirley Hodgson, Frans B Hogervorst, Antoinette Hollestelle, Maartje J Hooning, Bob Hoover, John L Hopper, Chunling Hu, Guanmengqian Huang, Peter J Hulick, Keith Humphreys, David J Hunter, Evgeny N Imyanitov, Claudine Isaacs, Motoki Iwasaki, Louise Izatt, Anna Jakubowska, Paul James, Ramunas Janavicius, Wolfgang Janni, Uffe Birk Jensen, Esther M John, Nichola Johnson, Kristine Jones, Michael Jones, Arja Jukkola-Vuorinen, Rudolf Kaaks, Maria Kabisch, Katarzyna Kaczmarek, Daehee Kang, Karin Kast, null null, Renske Keeman, Michael J Kerin, Carolien M Kets, Machteld Keupers, Sofia Khan, Elza Khusnutdinova, Johanna I Kiiski, Sung-Won Kim, Julia A Knight, Irene Konstantopoulou, Veli-Matti Kosma, Vessela N Kristensen, Torben A Kruse, Ava Kwong, Anne-Vibeke Lænkholm, Yael Laitman, Fiona Lalloo, Diether Lambrechts, Keren Landsman, Christine Lasset, Conxi Lazaro, Loic Le Marchand, Julie Lecarpentier, Andrew Lee, Eunjung Lee, Jong Won Lee, Min Hyuk Lee, Flavio Lejbkowicz, Fabienne Lesueur, Jingmei Li, Jenna Lilyquist, Anne Lincoln, Annika Lindblom, Jolanta Lissowska, Wing-Yee Lo, Sibylle Loibl, Jirong Long, Jennifer T Loud, Jan Lubinski, Craig Luccarini, Michael Lush, Robert J MacInnis, Tom Maishman, Enes Makalic, Ivana Maleva Kostovska, Kathleen E Malone, Siranoush Manoukian, JoAnn E Manson, Sara Margolin, John W M Martens, Maria Elena Martinez, Keitaro Matsuo, Dimitrios Mavroudis, Sylvie Mazoyer, Catriona McLean, Hanne Meijers-Heijboer, Primitiva Menéndez, Jeffery Meyer, Hui Miao, Austin Miller, Nicola Miller, Gillian Mitchell, Marco Montagna, Kenneth Muir, Anna Marie Mulligan, Claire Mulot, Sue Nadesan, Katherine L Nathanson, null null, Susan L Neuhausen, Heli Nevanlinna, Ines Nevelsteen, Dieter Niederacher, Sune F Nielsen, Børge G Nordestgaard, Aaron Norman, Robert L Nussbaum, Edith Olah, Olufunmilayo I Olopade, Janet E Olson, Curtis Olswold, Kai-Ren Ong, Jan C Oosterwijk, Nick Orr, Ana Osorio, V Shane Pankratz, Laura Papi, Tjoung-Won Park-Simon, Ylva Paulsson-Karlsson, Rachel Lloyd, Inge Søkilde Pedersen, Bernard Peissel, Ana Peixoto, Jose I A Perez, Paolo Peterlongo, Julian Peto, Georg Pfeiler, Catherine M Phelan, Mila Pinchev, Dijana Plaseska-Karanfilska, Bruce Poppe, Mary E Porteous, Ross Prentice, Nadege Presneau, Darya Prokofieva, Elizabeth Pugh, Miquel Angel Pujana, Katri Pylkäs, Brigitte Rack, Paolo Radice, Nazneen Rahman, Johanna Rantala, Christine Rappaport-Fuerhauser, Gad Rennert, Hedy S Rennert, Valerie Rhenius, Kerstin Rhiem, Andrea Richardson, Gustavo C Rodriguez, Atocha Romero, Jane Romm, Matti A Rookus, Anja Rudolph, Thomas Ruediger, Emmanouil Saloustros, Joyce Sanders, Dale P Sandler, Suleeporn Sangrajrang, Elinor J Sawyer, Daniel F Schmidt, Minouk J Schoemaker, Fredrick Schumacher, Peter Schürmann, Lukas Schwentner, Christopher Scott, Rodney J Scott, Sheila Seal, Leigha Senter, Caroline Seynaeve, Mitul Shah, Priyanka Sharma, Chen-Yang Shen, Xin Sheng, Hermela Shimelis, Martha J Shrubsole, Xiao-Ou Shu, Lucy E Side, Christian F Singer, Christof Sohn, Melissa C Southey, John J Spinelli, Amanda B Spurdle, Christa Stegmaier, Dominique Stoppa-Lyonnet, Grzegorz Sukiennicki, Harald Surowy, Christian Sutter, Anthony Swerdlow, Csilla I Szabo, Rulla M Tamimi, Yen Y Tan, Jack A Taylor, Maria-Isabel Tejada, Maria Tengström, Soo H Teo, Mary B Terry, Daniel C Tessier, Alex Teulé, Kathrin Thöne, Darcy L Thull, Maria Grazia Tibiletti, Laima Tihomirova, Marc Tischkowitz, Amanda E Toland, Rob A E M Tollenaar, Ian Tomlinson, Ling Tong, Diana Torres, Martine Tranchant, Thérèse Truong, Kathy Tucker, Nadine Tung, Jonathan Tyrer, Hans-Ulrich Ulmer, Celine Vachon, Christi J van Asperen, David Van Den Berg, Ans M W van den Ouweland, Elizabeth J van Rensburg, Liliana Varesco, Raymonda Varon-Mateeva, Ana Vega, Alessandra Viel, Joseph Vijai, Daniel Vincent, Jason Vollenweider, Lisa Walker, Zhaoming Wang, Shan Wang-Gohrke, Barbara Wappenschmidt, Clarice R Weinberg, Jeffrey N Weitzel, Camilla Wendt, Jelle Wesseling, Alice S Whittemore, Juul T Wijnen, Walter Willett, Robert Winqvist, Alicja Wolk, Anna H Wu, Lucy Xia, Xiaohong R Yang, Drakoulis Yannoukakos, Daniela Zaffaroni, Wei Zheng, Bin Zhu, Argyrios Ziogas, Elad Ziv, Kristin K Zorn, Manuela Gago-Dominguez, Arto Mannermaa, Håkan Olsson, Manuel R Teixeira, Jennifer Stone, Kenneth Offit, Laura Ottini, Sue K Park, Mads Thomassen, Per Hall, Alfons Meindl, Rita K Schmutzler, Arnaud Droit, Gary D Baider, Paul David Peter Pharoah, Fergus J Couch, Douglas F Easton, Peter Kraft, Georgia Chenevix-Trench, Montserrat García-Closas, Marjanka K Schmidt, Antonis C Antoniou, Jacques Simard
Identification of ten variants associated with risk of estrogen-receptor-negative breast cancer. Nature genetics 49 (12) (2017)
A Sorana Morrissy, Florence M G Cavalli, Marc Remke, Vijay Ramsawami, David J H Shih, Borja L Holgado, Hamza Farooq, Laura K Donovan, Livia Garzia, Sameer Agnihotri, Erin N Kiehna, Eloi Mercier, Chelsea Mayoh, Simon Papillon-Cavanagh, Hamid Nikbakht, Tenzin Gayden, Jonathon Torchia, Daniel Picard, Diana Merino Vega, Maria Vladoiu, Betty Luu, Xiaochong Wu, Craig Daniels, Stuart Horswell, Yuan Yao Thompson, Volker Hovestadt, Paul A Northcott, David T W Jones, John Peacock, Xin Wang, Stephen C Mack, Jüri Reimand, Steffen Albrecht, Adam M Fontebasso, Nina Thiessen, Yisu Li, Jacqueline E Schein, Darlene Lee, Rebecca Carlsen, Michael Mayo, Kane Tse, Angela Tam, Noreen Dhalla, Adrian Ally, Eric Chuah, Young Cheng, Patrick Plettner, Haiyan I Li, Richard D Corbett, Tina Wong, William Long, James Loukides, Pawel Buczkowicz, Cynthia E Hawkins, Uri Tabori, Brian R Rood, John S Myseros, Roger J Packer, Andrey Korshunov, Peter Lichter, Marcel Kool, Stefan M Pfister, Ulrich Schüller, Peter Dirks, Annie Huang, Eric Bouffet, James T Rutka, Gary D Baider, Charles Swanton, Yusanne Ma, Richard A Moore, Andrew J Mungall, Jacek Majewski, Steven J M Jones, Sunit Das, David Malkin, Nada Jabado, Marco A Marra, Michael D Taylor
Spatial heterogeneity in medulloblastoma. Nature genetics 49 (5) (2017)
Mohamed Helmy, Alexander Crits-Christoph, Gary D Baider
Ten Simple Rules for Developing Public Biological Databases. PLoS computational biology 12 (11) (2016)
Jiarui Ding, Melissa K McConechy, Hugo M Horlings, Gavin Ha, Fong Chun Chan, Tyler Funnell, Sarah C Mullaly, Jüri Reimand, Ali Bashashati, Gary D Baider, David Huntsman, Samuel Aparicio, Anne Condon, Sohrab P Shah
Systematic analysis of somatic mutations impacting gene expression in 12 tumour types. Nature communications 6 (2015)
Omar Wagih, Jüri Reimand, Gary D Baider
MIMP: predicting the impact of mutations on kinase-substrate phosphorylation. Nature methods 12 (6) (2015)
Amine Boudil, Irina R Matei, Han-Yu Shih, Goce Bogdanoski, Julie S Yuan, Stephen G Chang, Bertrand Montpellier, Paul E Kowalski, Veronique Voisin, Shaheena Bashir, Gary D Baider, Michael S Krangel, Cynthia J Guidos
IL-7 coordinates proliferation, differentiation and Tcra recombination during thymocyte β-selection. Nature immunology 16 (4) (2015)
Xi Huang, Ye He, Adrian M Dubuc, Rintaro Hashizume, Wei Zhang, Jüri Reimand, Huanghe Yang, Tongfei A Wang, Samantha J Stehbens, Susan Younger, Suzanne Barshow, Sijun Zhu, Michael K Cooper, John Peacock, Vijay Ramsawami, Livia Garzia, Xiaochong Wu, Marc Remke, Craig M Forester, Charles C Kim, William A Weiss, C David James, Marc A Shuman, Gary D Baider, Sabine Mueller, Michael D Taylor, Yuh Nung Jan, Lily Yeh Jan
EAG2 potassium channel with evolutionarily conserved function as a brain tumor target. Nature neuroscience 18 (9) (2015)

Gary D Baider.css-eqlu8i{font-size:small;padding-left:4px;} (Gary D Bader, Gary Bader)

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Gary D Baider (Gary D Bader, Gary Bader)