Rhys A Farrer

Loop profile ORCID

Publication Activity (10 Years)

Years Active: 2015-2024
Publications (10 Years): 27

Top Venues

Proceedings of the National Academy of Sciences of the United States of America

G3 (Bethesda, Md.)

BMC bioinformatics

PLoS pathogens

University of Exeter

Imperial College London (PHD)

This page only lists publications with an associated author ORCID identifier.

Affiliation History

University of Exeter Sep 01 2019

United Kingdom

Lecturer in Bioinformatics :: MRC Centre for Medical Mycology

University College London Aug 01 2017 - Sep 30 2018

United Kingdom

Senior Research Associate :: UCL Genetics Institute

Broad Institute Aug 01 2013 - Aug 01 2017

United States

Wellcome Trust / MIT Postdoctoral Fellow :: Genome Sequencing and Analysis

University College London Aug 01 2012 - Aug 01 2013

United Kingdom

Research Assistant :: UCL Genetics Institute

The Sainsbury Laboratory Aug 01 2008 - Aug 01 2009

United Kingdom

Bioinformatics Technician

Education History

Imperial College London Sep 01 2009 - Sep 01 2012

United Kingdom

PHD :: Infectious Disease Epidemiology

University of East Anglia Sep 01 2007 - Sep 01 2008

United Kingdom

MSC :: Biological Sciences

University of East Anglia Sep 01 2004 - Sep 01 2007

United Kingdom

BSC :: Biological Sciences

Publications

Victoria L Webster, Samuel J Hemmings, Marta Pérez, Matthew C Fisher, Mark J F Brown, Rhys A Farrer
Revealing the genome of the microsporidian Vairimorpha bombi, a potential driver of bumble bee declines in North America. G3 (Bethesda, Md.) 14 (4) (2024)
Theresa Wacker, Nicolas Helmstetter, David John Studholme, Rhys A Farrer
Genome variation in the Batrachochytrium pathogens of amphibians. PLoS pathogens 20 (5) (2024)
Victoria L Webster, Samuel J Hemmings, Marta Pérez, Matthew C Fisher, Mark J F Brown, Rhys A Farrer
Revealing the genome of the microsporidian Vairimorpha bombi, a potential driver of bumble bee declines in North America. G3 (Bethesda, Md.) 14 (4) (2024)
Theresa Wacker, Nicolas Helmstetter, David John Studholme, Rhys A Farrer
Genome variation in the Batrachochytrium pathogens of amphibians. PLoS pathogens 20 (5) (2024)
Victoria L Webster, Samuel J Hemmings, Marta Pérez, Matthew C Fisher, Mark J F Brown, Rhys A Farrer
Revealing the genome of the microsporidian Vairimorpha bombi, a potential driver of bumble bee declines in North America. G3 (Bethesda, Md.) (2024)
Victoria L Webster, Samuel J Hemmings, Marta Pérez, Matthew C Fisher, Mark J F Brown, Rhys A Farrer
Revealing the genome of the microsporidian Vairimorpha bombi, a potential driver of bumble bee declines in North America. G3 (Bethesda, Md.) 14 (4) (2024)
Victoria L Webster, Samuel J Hemmings, Marta Pérez, Matthew C Fisher, Mark J F Brown, Rhys A Farrer
Revealing the genome of the microsporidian Vairimorpha bombi, a potential driver of bumble bee declines in North America. G3 (Bethesda, Md.) 14 (4) (2024)
Victoria L Webster, Samuel J Hemmings, Marta Pérez, Matthew C Fisher, Mark J F Brown, Rhys A Farrer
Revealing the genome of the microsporidian Vairimorpha bombi, a potential driver of bumble bee declines in North America. G3 (Bethesda, Md.) (2024)
Gordon D Brown, Elizabeth R Ballou, Steven Bates, Elaine M Bignell, Andrew M Borman, Alexandra C Brand, Alistair J P Brown, Carolina Coelho, Peter Charles Cook, Rhys A Farrer, Nelesh P Govender, Neil A R Gow, William Hope, J Claire Hoving, Rachael Dangarembizi, Thomas S Harrison, Elizabeth M Johnson, Liliane Mukaremera, Mark Ramsdale, Christopher R Thornton, Jane Usher, Adilia Warris, Duncan Wilson
The pathobiology of human fungal infections. Nature reviews. Microbiology (2024)
Victoria L Webster, Samuel J Hemmings, Marta Pérez, Matthew C Fisher, Mark J F Brown, Rhys A Farrer
Revealing the genome of the microsporidian Vairimorpha bombi, a potential driver of bumble bee declines in North America. G3 (Bethesda, Md.) 14 (4) (2024)
Theresa Wacker, Nicolas Helmstetter, Duncan Wilson, Matthew C Fisher, David J Studholme, Rhys A Farrer
Two-speed genome evolution drives pathogenicity in fungal pathogens of animals. Proceedings of the National Academy of Sciences of the United States of America 120 (2) (2023)
Theresa Wacker, Nicolas Helmstetter, Duncan Wilson, Matthew C Fisher, David J Studholme, Rhys A Farrer
Two-speed genome evolution drives pathogenicity in fungal pathogens of animals. Proceedings of the National Academy of Sciences of the United States of America 120 (2) (2023)
Theresa Wacker, Nicolas Helmstetter, Duncan Wilson, Matthew C Fisher, David J Studholme, Rhys A Farrer
Two-speed genome evolution drives pathogenicity in fungal pathogens of animals. Proceedings of the National Academy of Sciences of the United States of America 120 (2) (2023)
Theresa Wacker, Nicolas Helmstetter, Duncan Wilson, Matthew C Fisher, David J Studholme, Rhys A Farrer
Two-speed genome evolution drives pathogenicity in fungal pathogens of animals. Proceedings of the National Academy of Sciences of the United States of America 120 (2) (2023)
Theresa Wacker, Nicolas Helmstetter, Duncan Wilson, Matthew C Fisher, David J Studholme, Rhys A Farrer
Two-speed genome evolution drives pathogenicity in fungal pathogens of animals. Proceedings of the National Academy of Sciences of the United States of America 120 (2) (2023)
Theresa Wacker, Nicolas Helmstetter, Duncan Wilson, Matthew C Fisher, David J Studholme, Rhys A Farrer
Two-speed genome evolution drives pathogenicity in fungal pathogens of animals. Proceedings of the National Academy of Sciences of the United States of America 120 (2) (2023)
Theresa Wacker, Nicolas Helmstetter, Duncan Wilson, Matthew C Fisher, David J Studholme, Rhys A Farrer
Two-speed genome evolution drives pathogenicity in fungal pathogens of animals. Proceedings of the National Academy of Sciences of the United States of America 120 (2) (2023)
Nicolas Helmstetter, Aleksandra D Chybowska, Christopher Delaney, Alessandra Da Silva Dantas, Hugh Gifford, Theresa Wacker, Carol A Munro, Adilia Warris, Brian Jones, Christina A Cuomo, Duncan Wilson, Gordon Ramage, Rhys A Farrer
Population genetics and microevolution of clinical Candida glabrata reveals recombinant sequence types and hyper-variation within mitochondrial genomes, virulence genes, and drug targets. Genetics 221 (1) (2022)
Rhys A Farrer
HaplotypeTools: a toolkit for accurately identifying recombination and recombinant genotypes. BMC bioinformatics 22 (1) (2021)
Rhys A Farrer, Miwha Chang, Michael J Davis, Lucy van Dorp, Dong-Hoon Yang, Terrance Shea, Thomas R Sewell, Wieland Meyer, Francois Balloux, Hannah M Edwards, Duncan Chanda, Geoffrey Kwenda, Mathieu Vanhove, Yun C Chang, Christina A Cuomo, Matthew C Fisher, Kyung J Kwon-Chung
A New Lineage of Cryptococcus gattii (VGV) Discovered in the Central Zambezian Miombo Woodlands. mBio 10 (6) (2019)
Simon J O'Hanlon, Adrien Rieux, Rhys A Farrer, Gonçalo M Rosa, Bruce Waldman, Arnaud Bataille, Tiffany A Kosch, Kris A Murray, Balázs Brankovics, Matteo Fumagalli, Michael D Martin, Nathan Wales, Mario Alvarado-Rybak, Kieran A Bates, Lee Berger, Susanne Böll, Lola M Brookes, Frances Clare, Elodie A Courtois, Andrew A Cunningham, Thomas M Doherty-Bone, Pria Ghosh, David J Gower, William E Hintz, Jacob Höglund, Thomas S Jenkinson, Chun-Fu Lin, Anssi Laurila, Adeline Loyau, An Martel, Sara Meurling, Claude Miaud, Pete Minting, Frank Pasmans, Emilio Valbuena-Ureña, Benedikt R Schmidt, Jennifer M G Shelton, Lee F Skerratt, Freya Smith, Claudio Azat, Matteo Spagnoletti, Giulia Tessa, Luís Felipe Toledo, Andrés Valenzuela-Sánchez, Ruhan Verster, Judit Vörös, Rebecca J Webb, Claudia Wierzbicki, Emma Wombwell, Kelly Raquel Zamudio, David M Aanensen, Timothy Y James, Marcus Thomas Pius Gilbert, Che Weldon, Jaime Bosch, Francois Balloux, Trenton W J Garner, Matthew C Fisher
Recent Asian origin of chytrid fungi causing global amphibian declines. Science (New York, N.Y.) 360 (6389) (2018)
Rhys A Farrer, Christopher B Ford, Johanna L Rhodes, Toni Delorey, Robin C May, Matthew C Fisher, Elaine Cloutman-Green, Francois Balloux, Christina A Cuomo
Transcriptional Heterogeneity of Cryptococcus gattii VGII Compared with Non-VGII Lineages Underpins Key Pathogenicity Pathways. mSphere 3 (5) (2018)
Jose F Muñoz, Lalitha Gade, Nancy A Chow, Vladimir N Loparev, Phalasy Juieng, Elizabeth L Berkow, Rhys A Farrer, Anastasia P Litvintseva, Christina A Cuomo
Genomic insights into multidrug-resistance, mating and virulence in Candida auris and related emerging species. Nature communications 9 (1) (2018)
Rhys A Farrer, Kerstin Voelz, Daniel A Henk, Simon A Johnston, Matthew C Fisher, Robin C May, Christina A Cuomo
Microevolutionary traits and comparative population genomics of the emerging pathogenic fungus Cryptococcus gattii. Philosophical transactions of the Royal Society of London. Series B, Biological sciences 371 (1709) (2017)
Rhys A Farrer, An Martel, Elin Verbrugghe, Amr Abouelleil, Richard Ducatelle, Joyce E Longcore, Timothy Y James, Frank Pasmans, Matthew C Fisher, Christina A Cuomo
Genomic innovations linked to infection strategies across emerging pathogenic chytrid fungi. Nature communications 8 (2017)
Rhys A Farrer
Synima: a Synteny imaging tool for annotated genome assemblies. BMC bioinformatics 18 (1) (2017)
José F Muñoz, Rhys A Farrer, Christopher A Desjardins, Juan E Gallo, Sean Sykes, Sharadha Sakthikumar, Elizabeth Misas, Emily A Whiston, Eduardo Bagagli, Celia M A Soares, Marcus de M Teixeira, John W Taylor, Oliver K Clay, Juan G McEwen, Christina A Cuomo
Genome Diversity, Recombination, and Virulence across the Major Lineages of Paracoccidioides. mSphere 1 (5) (2016)
Rhys A Farrer, Christopher A Desjardins, Sharadha Sakthikumar, Sharvari Gujja, Sakina Saif, Qiandong Zeng, Yuan Chen, Kerstin Voelz, Joseph Heitman, Robin C May, Matthew C Fisher, Christina A Cuomo
Genome Evolution and Innovation across the Four Major Lineages of Cryptococcus gattii. mBio 6 (5) (2015)

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Publication Activity (10 Years)

Top Topics

Top Venues

Rhys A Farrer