Robert L Jernigan

ORCID

Publication Activity (10 Years)

Years Active: 2017-2023
Publications (10 Years): 33

Top Venues

Proceedings of the National Academy of Sciences of the United States of America

The journal of physical chemistry. B

Proteins

Bioinformatics advances

Iowa State University

Stanford University (PHD)

This page only lists publications with an associated author ORCID identifier.

Affiliation History

Iowa State University

United States

Professor and Center Director :: Biochemistryr, Biophysics and Molecular Biology

Education History

Stanford University

United States

PHD :: Physical Chemistry

Publications

Mesih Kilinc, Kejue Jia, Robert L Jernigan
Improved global protein homolog detection with major gains in function identification. Proceedings of the National Academy of Sciences of the United States of America 120 (9) (2023)
Ambuj Kumar, Burak T Kaynak, Karin S Dorman, Pemra Doruker, Robert L Jernigan
Predicting allosteric pockets in protein biological assemblages. Bioinformatics (Oxford, England) 39 (5) (2023)
Kejue Jia, Mesih Kilinc, Robert L Jernigan
Functional Protein Dynamics Directly from Sequences. The journal of physical chemistry. B (2023)
Kejue Jia, Mesih Kilinc, Robert L Jernigan
Functional Protein Dynamics Directly from Sequences. The journal of physical chemistry. B 127 (9) (2023)
Mesih Kilinc, Kejue Jia, Robert L Jernigan
Improved global protein homolog detection with major gains in function identification. Proceedings of the National Academy of Sciences of the United States of America 120 (9) (2023)
Kejue Jia, Mesih Kilinc, Robert L Jernigan
Functional Protein Dynamics Directly from Sequences. The journal of physical chemistry. B 127 (9) (2023)
Kejue Jia, Mesih Kilinc, Robert L Jernigan
Functional Protein Dynamics Directly from Sequences. The journal of physical chemistry. B 127 (9) (2023)
Mesih Kilinc, Kejue Jia, Robert L Jernigan
Improved global protein homolog detection with major gains in function identification. Proceedings of the National Academy of Sciences of the United States of America 120 (9) (2023)
Ambuj Kumar, Burak T Kaynak, Karin S Dorman, Pemra Doruker, Robert L Jernigan
Predicting allosteric pockets in protein biological assemblages. Bioinformatics (Oxford, England) 39 (5) (2023)
Mesih Kilinc, Kejue Jia, Robert L Jernigan
JSONWP: a static website generator for protein bioinformatics research. Bioinformatics advances 3 (1) (2023)
Mesih Kilinc, Kejue Jia, Robert L Jernigan
Improved global protein homolog detection with major gains in function identification. Proceedings of the National Academy of Sciences of the United States of America 120 (9) (2023)
Kejue Jia, Mesih Kilinc, Robert L Jernigan
Functional Protein Dynamics Directly from Sequences. The journal of physical chemistry. B 127 (9) (2023)
Mesih Kilinc, Kejue Jia, Robert L Jernigan
Improved global protein homolog detection with major gains in function identification. Proceedings of the National Academy of Sciences of the United States of America 120 (9) (2023)
Shi-Jie Chen, Mubashir Hassan, Robert L Jernigan, Kejue Jia, Daisuke Kihara, Andrzej Kloczkowski, Sergei Kotelnikov, Dima Kozakov, Jie Liang, Adam Liwo, Silvina Matysiak, Jarek Meller, Cristian Micheletti, Julie C Mitchell, Sayantan Mondal, Ruth Nussinov, Kei-Ichi Okazaki, Dzmitry Padhorny, Jeffrey Skolnick, Tobin R Sosnick, George Stan, Ilya Vakser, Xiaoqin Zou, George D Rose
Opinion: Protein folds vs. protein folding: Differing questions, different challenges. Proceedings of the National Academy of Sciences of the United States of America 120 (1) (2022)
Shi-Jie Chen, Mubashir Hassan, Robert L Jernigan, Kejue Jia, Daisuke Kihara, Andrzej Kloczkowski, Sergei Kotelnikov, Dima Kozakov, Jie Liang, Adam Liwo, Silvina Matysiak, Jarek Meller, Cristian Micheletti, Julie C Mitchell, Sayantan Mondal, Ruth Nussinov, Kei-Ichi Okazaki, Dzmitry Padhorny, Jeffrey Skolnick, Tobin R Sosnick, George Stan, Ilya Vakser, Xiaoqin Zou, George D Rose
Opinion: Protein folds vs. protein folding: Differing questions, different challenges. Proceedings of the National Academy of Sciences of the United States of America 120 (1) (2022)
Pranav M Khade, Robert L Jernigan
Entropies Derived from the Packing Geometries within a Single Protein Structure. ACS omega 7 (24) (2022)
Pranav M Khade, Robert L Jernigan
PACKMAN-Molecule: Python toolbox for structural bioinformatics. Bioinformatics advances 2 (1) (2022)
Ambuj Kumar, Pranav M Khade, Karin S Dorman, Robert L Jernigan
Coarse-graining protein structures into their dynamic communities with DCI, a dynamic community identifier. Bioinformatics (Oxford, England) 38 (10) (2022)
Shi-Jie Chen, Mubashir Hassan, Robert L Jernigan, Kejue Jia, Daisuke Kihara, Andrzej Kloczkowski, Sergei Kotelnikov, Dima Kozakov, Jie Liang, Adam Liwo, Silvina Matysiak, Jarek Meller, Cristian Micheletti, Julie C Mitchell, Sayantan Mondal, Ruth Nussinov, Kei-Ichi Okazaki, Dzmitry Padhorny, Jeffrey Skolnick, Tobin R Sosnick, George Stan, Ilya Vakser, Xiaoqin Zou, George D Rose
Opinion: Protein folds vs. protein folding: Differing questions, different challenges. Proceedings of the National Academy of Sciences of the United States of America 120 (1) (2022)
Shi-Jie Chen, Mubashir Hassan, Robert L Jernigan, Kejue Jia, Daisuke Kihara, Andrzej Kloczkowski, Sergei Kotelnikov, Dima Kozakov, Jie Liang, Adam Liwo, Silvina Matysiak, Jarek Meller, Cristian Micheletti, Julie C Mitchell, Sayantan Mondal, Ruth Nussinov, Kei-Ichi Okazaki, Dzmitry Padhorny, Jeffrey Skolnick, Tobin R Sosnick, George Stan, Ilya Vakser, Xiaoqin Zou, George D Rose
Opinion: Protein folds vs. protein folding: Differing questions, different challenges. Proceedings of the National Academy of Sciences of the United States of America 120 (1) (2022)
Shi-Jie Chen, Mubashir Hassan, Robert L Jernigan, Kejue Jia, Daisuke Kihara, Andrzej Kloczkowski, Sergei Kotelnikov, Dima Kozakov, Jie Liang, Adam Liwo, Silvina Matysiak, Jarek Meller, Cristian Micheletti, Julie C Mitchell, Sayantan Mondal, Ruth Nussinov, Kei-Ichi Okazaki, Dzmitry Padhorny, Jeffrey Skolnick, Tobin R Sosnick, George Stan, Ilya Vakser, Xiaoqin Zou, George D Rose
Opinion: Protein folds vs. protein folding: Differing questions, different challenges. Proceedings of the National Academy of Sciences of the United States of America 120 (1) (2022)
Shi-Jie Chen, Mubashir Hassan, Robert L Jernigan, Kejue Jia, Daisuke Kihara, Andrzej Kloczkowski, Sergei Kotelnikov, Dima Kozakov, Jie Liang, Adam Liwo, Silvina Matysiak, Jarek Meller, Cristian Micheletti, Julie C Mitchell, Sayantan Mondal, Ruth Nussinov, Kei-Ichi Okazaki, Dzmitry Padhorny, Jeffrey Skolnick, Tobin R Sosnick, George Stan, Ilya Vakser, Xiaoqin Zou, George D Rose
Opinion: Protein folds vs. protein folding: Differing questions, different challenges. Proceedings of the National Academy of Sciences of the United States of America 120 (1) (2022)
Shi-Jie Chen, Mubashir Hassan, Robert L Jernigan, Kejue Jia, Daisuke Kihara, Andrzej Kloczkowski, Sergei Kotelnikov, Dima Kozakov, Jie Liang, Adam Liwo, Silvina Matysiak, Jarek Meller, Cristian Micheletti, Julie C Mitchell, Sayantan Mondal, Ruth Nussinov, Kei-Ichi Okazaki, Dzmitry Padhorny, Jeffrey Skolnick, Tobin R Sosnick, George Stan, Ilya Vakser, Xiaoqin Zou, George D Rose
Opinion: Protein folds vs. protein folding: Differing questions, different challenges. Proceedings of the National Academy of Sciences of the United States of America 120 (1) (2022)
Shi-Jie Chen, Mubashir Hassan, Robert L Jernigan, Kejue Jia, Daisuke Kihara, Andrzej Kloczkowski, Sergei Kotelnikov, Dima Kozakov, Jie Liang, Adam Liwo, Silvina Matysiak, Jarek Meller, Cristian Micheletti, Julie C Mitchell, Sayantan Mondal, Ruth Nussinov, Kei-Ichi Okazaki, Dzmitry Padhorny, Jeffrey Skolnick, Tobin R Sosnick, George Stan, Ilya Vakser, Xiaoqin Zou, George D Rose
Opinion: Protein folds vs. protein folding: Differing questions, different challenges. Proceedings of the National Academy of Sciences of the United States of America 120 (1) (2022)
Pranav M Khade, Robert L Jernigan
PACKMAN-Molecule: Python toolbox for structural bioinformatics. Bioinformatics advances 2 (1) (2022)
Kejue Jia, Robert L Jernigan
New amino acid substitution matrix brings sequence alignments into agreement with structure matches. Proteins 89 (6) (2021)
Sayane Shome, Kannan Sankar, Robert L Jernigan
Simulated Drug Efflux for the AbgT Family of Membrane Transporters. Journal of chemical information and modeling 61 (11) (2021)
Domenico Scaramozzino, Pranav M Khade, Robert L Jernigan, Giuseppe Lacidogna, Alberto Carpinteri
Structural compliance: A new metric for protein flexibility. Proteins 88 (11) (2020)
Sambit K Mishra, Gaurav Kandoi, Robert L Jernigan
Coupling dynamics and evolutionary information with structure to identify protein regulatory and functional binding sites. Proteins 87 (10) (2019)
Sambit Kumar Mishra, Robert L Jernigan
Protein dynamic communities from elastic network models align closely to the communities defined by molecular dynamics. PloS one 13 (6) (2018)
Kannan Sankar, Sambit K Mishra, Robert L Jernigan
Comparisons of Protein Dynamics from Experimental Structure Ensembles, Molecular Dynamics Ensembles, and Coarse-Grained Elastic Network Models. The journal of physical chemistry. B 122 (21) (2018)
Sambit Kumar Mishra, Kannan Sankar, Robert L Jernigan
Altered dynamics upon oligomerization corresponds to key functional sites. Proteins 85 (8) (2017)
Kannan Sankar, Kejue Jia, Robert L Jernigan
Knowledge-based entropies improve the identification of native protein structures. Proceedings of the National Academy of Sciences of the United States of America 114 (11) (2017)

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Publication Activity (10 Years)

Top Topics

Top Venues

Robert L Jernigan