Xiaoqin Zou

ORCID

Publication Activity (10 Years)

Years Active: 2017-2023
Publications (10 Years): 23

Top Venues

Proceedings of the National Academy of Sciences of the United States of America

Proteins

Journal of computer-aided molecular design

Nature communications

University of Missouri Columbia

University of California San Diego (PHD)

This page only lists publications with an associated author ORCID identifier.

Affiliation History

University of Missouri Columbia

United States

Professory :: Department of Physics and Department of Biochemistry

Education History

University of California San Diego

United States

PHD :: Department of Physics

Publications

Xianjin Xu, Rui Duan, Xiaoqin Zou
Template-guided method for protein-ligand complex structure prediction: Application to CASP15 protein-ligand studies. Proteins (2023)
Marc F Lensink, Guillaume Brysbaert, Nessim Raouraoua, Paul A Bates, Marco Giulini, Rodrigo V Honorato, Charlotte van Noort, Joao M C Teixeira, Alexandre M J J Bonvin, Ren Kong, Hang Shi, Xufeng Lu, Shan Chang, Jian Liu, Zhiye Guo, Xiao Chen, Alex Morehead, Raj S Roy, Tianqi Wu, Nabin Giri, Farhan Quadir, Chen Chen, Jianlin Cheng, Carlos A Del Carpio, Eichiro Ichiishi, Luis A Rodriguez-Lumbreras, Juan Fernandez-Recio, Ameya Harmalkar, Lee-Shin Chu, Sam Canner, Rituparna Smanta, Jeffrey J Gray, Hao Li, Peicong Lin, Jiahua He, Huanyu Tao, Sheng-You Huang, Jorge Roel-Touris, Brian Jimenez-Garcia, Charles W Christoffer, Anika J Jain, Yuki Kagaya, Harini Kannan, Tsukasa Nakamura, Genki Terashi, Jacob C Verburgt, Yuanyuan Zhang, Zicong Zhang, Hayato Fujuta, Masakazu Sekijima, Daisuke Kihara, Omeir Khan, Sergei Kotelnikov, Usman Ghani, Dzmitry Padhorny, Dmitri Beglov, Sandor Vajda, Dima Kozakov, Surendra S Negi, Tiziana Ricciardelli, Didier Barradas-Bautista, Zhen Cao, Mohit Chawla, Luigi Cavallo, Romina Oliva, Rui Yin, Melyssa Cheung, Johnathan D Guest, Jessica Lee, Brian G Pierce, Ben Shor, Tomer Cohen, Matan Halfon, Dina Schneidman-Duhovny, Shaowen Zhu, Rujie Yin, Yuanfei Sun, Yang Shen, Martyna Maszota-Zieleniak, Krzysztof K Bojarski, Emilia A Lubecka, Mateusz Marcisz, Annemarie Danielsson, Lukasz Dziadek, Margrethe Gaardlos, Artur Gieldon, Adam Liwo, Sergey A Samsonov, Rafal Slusarz, Karolina Zieba, Adam K Sieradzan, Cezary Czaplewski, Shinpei Kobayashi, Yuta Miyakawa, Yasuomi Kiyota, Mayuko Takeda-Shitaka, Kliment Olechnovič, Lukas Valancauskas, Justas Dapkunas, Ceslovas Venclovas, Björn Wallner, Lin Yang, Chengyu Hou, Xiaodong He, Shuai Guo, Shenda Jiang, Xiaoliang Ma, Rui Duan, Liming Qui, Xianjin Xu, Xiaoqin Zou, Sameer Velankar, Shoshana J Wodak
Impact of AlphaFold on structure prediction of protein complexes: The CASP15-CAPRI experiment. Proteins (2023)
Shi-Jie Chen, Mubashir Hassan, Robert L Jernigan, Kejue Jia, Daisuke Kihara, Andrzej Kloczkowski, Sergei Kotelnikov, Dima Kozakov, Jie Liang, Adam Liwo, Silvina Matysiak, Jarek Meller, Cristian Micheletti, Julie C Mitchell, Sayantan Mondal, Ruth Nussinov, Kei-Ichi Okazaki, Dzmitry Padhorny, Jeffrey Skolnick, Tobin R Sosnick, George Stan, Ilya Vakser, Xiaoqin Zou, George D Rose
Opinion: Protein folds vs. protein folding: Differing questions, different challenges. Proceedings of the National Academy of Sciences of the United States of America 120 (1) (2022)
Shi-Jie Chen, Mubashir Hassan, Robert L Jernigan, Kejue Jia, Daisuke Kihara, Andrzej Kloczkowski, Sergei Kotelnikov, Dima Kozakov, Jie Liang, Adam Liwo, Silvina Matysiak, Jarek Meller, Cristian Micheletti, Julie C Mitchell, Sayantan Mondal, Ruth Nussinov, Kei-Ichi Okazaki, Dzmitry Padhorny, Jeffrey Skolnick, Tobin R Sosnick, George Stan, Ilya Vakser, Xiaoqin Zou, George D Rose
Opinion: Protein folds vs. protein folding: Differing questions, different challenges. Proceedings of the National Academy of Sciences of the United States of America 120 (1) (2022)
Shi-Jie Chen, Mubashir Hassan, Robert L Jernigan, Kejue Jia, Daisuke Kihara, Andrzej Kloczkowski, Sergei Kotelnikov, Dima Kozakov, Jie Liang, Adam Liwo, Silvina Matysiak, Jarek Meller, Cristian Micheletti, Julie C Mitchell, Sayantan Mondal, Ruth Nussinov, Kei-Ichi Okazaki, Dzmitry Padhorny, Jeffrey Skolnick, Tobin R Sosnick, George Stan, Ilya Vakser, Xiaoqin Zou, George D Rose
Opinion: Protein folds vs. protein folding: Differing questions, different challenges. Proceedings of the National Academy of Sciences of the United States of America 120 (1) (2022)
Shi-Jie Chen, Mubashir Hassan, Robert L Jernigan, Kejue Jia, Daisuke Kihara, Andrzej Kloczkowski, Sergei Kotelnikov, Dima Kozakov, Jie Liang, Adam Liwo, Silvina Matysiak, Jarek Meller, Cristian Micheletti, Julie C Mitchell, Sayantan Mondal, Ruth Nussinov, Kei-Ichi Okazaki, Dzmitry Padhorny, Jeffrey Skolnick, Tobin R Sosnick, George Stan, Ilya Vakser, Xiaoqin Zou, George D Rose
Opinion: Protein folds vs. protein folding: Differing questions, different challenges. Proceedings of the National Academy of Sciences of the United States of America 120 (1) (2022)
Shi-Jie Chen, Mubashir Hassan, Robert L Jernigan, Kejue Jia, Daisuke Kihara, Andrzej Kloczkowski, Sergei Kotelnikov, Dima Kozakov, Jie Liang, Adam Liwo, Silvina Matysiak, Jarek Meller, Cristian Micheletti, Julie C Mitchell, Sayantan Mondal, Ruth Nussinov, Kei-Ichi Okazaki, Dzmitry Padhorny, Jeffrey Skolnick, Tobin R Sosnick, George Stan, Ilya Vakser, Xiaoqin Zou, George D Rose
Opinion: Protein folds vs. protein folding: Differing questions, different challenges. Proceedings of the National Academy of Sciences of the United States of America 120 (1) (2022)
Shi-Jie Chen, Mubashir Hassan, Robert L Jernigan, Kejue Jia, Daisuke Kihara, Andrzej Kloczkowski, Sergei Kotelnikov, Dima Kozakov, Jie Liang, Adam Liwo, Silvina Matysiak, Jarek Meller, Cristian Micheletti, Julie C Mitchell, Sayantan Mondal, Ruth Nussinov, Kei-Ichi Okazaki, Dzmitry Padhorny, Jeffrey Skolnick, Tobin R Sosnick, George Stan, Ilya Vakser, Xiaoqin Zou, George D Rose
Opinion: Protein folds vs. protein folding: Differing questions, different challenges. Proceedings of the National Academy of Sciences of the United States of America 120 (1) (2022)
Guohui Zhang, Xianjin Xu, Zhiguang Jia, Yanyan Geng, Hongwu Liang, Jingyi Shi, Martina Marras, Carlota Abella, Karl L Magleby, Jonathan R Silva, Jianhan Chen, Xiaoqin Zou, Jianmin Cui
An allosteric modulator activates BK channels by perturbing coupling between Ca 2+ binding and pore opening. Nature communications 13 (1) (2022)
Shi-Jie Chen, Mubashir Hassan, Robert L Jernigan, Kejue Jia, Daisuke Kihara, Andrzej Kloczkowski, Sergei Kotelnikov, Dima Kozakov, Jie Liang, Adam Liwo, Silvina Matysiak, Jarek Meller, Cristian Micheletti, Julie C Mitchell, Sayantan Mondal, Ruth Nussinov, Kei-Ichi Okazaki, Dzmitry Padhorny, Jeffrey Skolnick, Tobin R Sosnick, George Stan, Ilya Vakser, Xiaoqin Zou, George D Rose
Opinion: Protein folds vs. protein folding: Differing questions, different challenges. Proceedings of the National Academy of Sciences of the United States of America 120 (1) (2022)
Shi-Jie Chen, Mubashir Hassan, Robert L Jernigan, Kejue Jia, Daisuke Kihara, Andrzej Kloczkowski, Sergei Kotelnikov, Dima Kozakov, Jie Liang, Adam Liwo, Silvina Matysiak, Jarek Meller, Cristian Micheletti, Julie C Mitchell, Sayantan Mondal, Ruth Nussinov, Kei-Ichi Okazaki, Dzmitry Padhorny, Jeffrey Skolnick, Tobin R Sosnick, George Stan, Ilya Vakser, Xiaoqin Zou, George D Rose
Opinion: Protein folds vs. protein folding: Differing questions, different challenges. Proceedings of the National Academy of Sciences of the United States of America 120 (1) (2022)
Xianjin Xu, Xiaoqin Zou
Predicting Protein-Peptide Complex Structures by Accounting for Peptide Flexibility and the Physicochemical Environment. Journal of chemical information and modeling 62 (1) (2021)
Updesh Dixit, Savita Bhutoria, Xuhong Wu, Liming Qiu, Menachem Spira, Sheeba Mathew, Richard Harris, Lucas J Adams, Sean M Cahill, Rajiv Pathak, P Rajesh Kumar, Minh Nguyen, Seetharama A Acharya, Michael Brenowitz, Steven C Almo, Xiaoqin Zou, Alasdair C Steven, David Cowburn, Mark Girvin, Ganjam V Kalpana
INI1/SMARCB1 Rpt1 domain mimics TAR RNA in binding to integrase to facilitate HIV-1 replication. Nature communications 12 (1) (2021)
Zhiwei Ma, Sheng-You Huang, Fei Cheng, Xiaoqin Zou
Rapid Identification of Inhibitors and Prediction of Ligand Selectivity for Multiple Proteins: Application to Protein Kinases. The journal of physical chemistry. B 125 (9) (2021)
Marc F Lensink, Guillaume Brysbaert, Théo Mauri, Nurul Nadzirin, Sameer Velankar, Raphael A G Chaleil, Tereza Clarence, Paul A Bates, Ren Kong, Bin Liu, Guangbo Yang, Ming Liu, Hang Shi, Xufeng Lu, Shan Chang, Raj S Roy, Farhan Quadir, Jian Liu, Jianlin Cheng, Anna Antoniak, Cezary Czaplewski, Artur Giełdoń, Mateusz Kogut, Agnieszka G Lipska, Adam Liwo, Emilia A Lubecka, Martyna Maszota-Zieleniak, Adam K Sieradzan, Rafał Ślusarz, Patryk A Wesołowski, Karolina Zięba, Carlos A Del Carpio Muñoz, Eiichiro Ichiishi, Ameya Harmalkar, Jeffrey J Gray, Alexandre M J J Bonvin, Francesco Ambrosetti, Rodrigo Vargas Honorato, Zuzana Jandova, Brian Jiménez-García, Panagiotis I Koukos, Siri Van Keulen, Charlotte W Van Noort, Manon Réau, Jorge Roel-Touris, Sergei Kotelnikov, Dzmitry Padhorny, Kathryn A Porter, Andrey Alekseenko, Mikhail Ignatov, Israel Desta, Ryota Ashizawa, Zhuyezi Sun, Usman Ghani, Nasser Hashemi, Sandor Vajda, Dima Kozakov, Mireia Rosell, Luis A Rodríguez-Lumbreras, Juan Fernández-Recio, Agnieszka Karczynska, Sergei Grudinin, Yumeng Yan, Hao Li, Peicong Lin, Sheng-You Huang, Charles W Christoffer, Genki Terashi, Jacob Verburgt, Daipayan Sarkar, Tunde Aderinwale, Xiao Wang, Daisuke Kihara, Tsukasa Nakamura, Yuya Hanazono, Ragul Gowthaman, Johnathan D Guest, Rui Yin, Ghazaleh Taherzadeh, Brian G Pierce, Didier Barradas-Bautista, Zhen Cao, Luigi Cavallo, Romina Oliva, Yuanfei Sun, Shaowen Zhu, Yang Shen, Taeyong Park, Hyeonuk Woo, Jinsol Yang, Sohee Kwon, Jonghun Won, Chaok Seok, Yasuomi Kiyota, Shinpei Kobayashi, Yoshiki Harada, Mayuko Takeda-Shitaka, Petras J Kundrotas, Amar Singh, Ilya A Vakser, Justas Dapkunas, Kliment Olechnovič, Česlovas Venclovas, Rui Duan, Liming Qiu, Xianjin Xu, Shuang Zhang, Xiaoqin Zou, Shoshana J Wodak
Prediction of protein assemblies, the next frontier: The CASP14-CAPRI experiment. Proteins 89 (12) (2021)
Yangyang Lin, Sam Z Grinter, Zhongju Lu, Xianjin Xu, Hong Zhan Wang, Hongwu Liang, Panpan Hou, Junyuan Gao, Chris Clausen, Jingyi Shi, Wenshan Zhao, Zhiwei Ma, Yong-Feng Liu, Kelli McFarland White, Lu Zhao, Po Wei Kang, Guohui Zhang, Ira S Cohen, Xiaoqin Zou, Jianmin Cui
Modulating the voltage sensor of a cardiac potassium channel shows antiarrhythmic effects. Proceedings of the National Academy of Sciences of the United States of America 118 (20) (2021)
Rui Duan, Liming Qiu, Xianjin Xu, Zhiwei Ma, Benjamin Ryan Merideth, Chi-Ren Shyu, Xiaoqin Zou
Performance of human and server prediction in CAPRI rounds 38-45. Proteins 88 (8) (2020)
Han-I Yeh, Liming Qiu, Yoshiro Sohma, Katja Conrath, Xiaoqin Zou, Tzyh-Chang Hwang
Identifying the molecular target sites for CFTR potentiators GLPG1837 and VX-770. The Journal of general physiology 151 (7) (2019)
Xianjin Xu, Zhiwei Ma, Rui Duan, Xiaoqin Zou
Predicting protein-ligand binding modes for CELPP and GC3: workflows and insight. Journal of computer-aided molecular design 33 (3) (2019)
Xianjin Xu, Xiaoqin Zou
PepPro: A Nonredundant Structure Data Set for Benchmarking Peptide-Protein Computational Docking. Journal of computational chemistry 41 (4) (2019)
Xianjin Xu, Chengfei Yan, Xiaoqin Zou
MDockPeP: An ab-initio protein-peptide docking server. Journal of computational chemistry 39 (28) (2018)
Xianjin Xu, Chengfei Yan, Xiaoqin Zou
Improving binding mode and binding affinity predictions of docking by ligand-based search of protein conformations: evaluation in D3R grand challenge 2015. Journal of computer-aided molecular design 31 (8) (2017)
Rui Duan, Xianjin Xu, Xiaoqin Zou
Lessons learned from participating in D3R 2016 Grand Challenge 2: compounds targeting the farnesoid X receptor. Journal of computer-aided molecular design 32 (1) (2017)

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Publication Activity (10 Years)

Top Topics

Top Venues

Xiaoqin Zou