Sergei Kotelnikov

Publication Activity (10 Years)

Years Active: 2022-2023
Publications (10 Years): 20

Top Topics

Epithelial Mesenchymal Transition

Mass Spectrometry

Protein Protein

Transforming Growth Factor

Top Venues

Proceedings of the National Academy of Sciences of the United States of America

Nature communications

Bioinformatics advances

Nature protocols

This page only lists publications with an associated author ORCID identifier.

Publications

Indranil Paul, Dante Bolzan, Ahmed Youssef, Keith A Gagnon, Heather Hook, Gopal Karemore, Michael U J Oliphant, Weiwei Lin, Qian Liu, Sadhna Phanse, Carl White, Dzmitry Padhorny, Sergei Kotelnikov, Christopher S Chen, Pingzhao Hu, Gerald V Denis, Dima Kozakov, Brian Raught, Trevor Siggers, Stefan Wuchty, Senthil K Muthuswamy, Andrew Emili
Parallelized multidimensional analytic framework applied to mammary epithelial cells uncovers regulatory principles in EMT. Nature communications 14 (1) (2023)
Indranil Paul, Dante Bolzan, Ahmed Youssef, Keith A Gagnon, Heather Hook, Gopal Karemore, Michael U J Oliphant, Weiwei Lin, Qian Liu, Sadhna Phanse, Carl White, Dzmitry Padhorny, Sergei Kotelnikov, Christopher S Chen, Pingzhao Hu, Gerald V Denis, Dima Kozakov, Brian Raught, Trevor Siggers, Stefan Wuchty, Senthil K Muthuswamy, Andrew Emili
Parallelized multidimensional analytic framework applied to mammary epithelial cells uncovers regulatory principles in EMT. Nature communications 14 (1) (2023)
Indranil Paul, Dante Bolzan, Ahmed Youssef, Keith A Gagnon, Heather Hook, Gopal Karemore, Michael U J Oliphant, Weiwei Lin, Qian Liu, Sadhna Phanse, Carl White, Dzmitry Padhorny, Sergei Kotelnikov, Christopher S Chen, Pingzhao Hu, Gerald V Denis, Dima Kozakov, Brian Raught, Trevor Siggers, Stefan Wuchty, Senthil K Muthuswamy, Andrew Emili
Parallelized multidimensional analytic framework applied to mammary epithelial cells uncovers regulatory principles in EMT. Nature communications 14 (1) (2023)
Indranil Paul, Dante Bolzan, Ahmed Youssef, Keith A Gagnon, Heather Hook, Gopal Karemore, Michael U J Oliphant, Weiwei Lin, Qian Liu, Sadhna Phanse, Carl White, Dzmitry Padhorny, Sergei Kotelnikov, Christopher S Chen, Pingzhao Hu, Gerald V Denis, Dima Kozakov, Brian Raught, Trevor Siggers, Stefan Wuchty, Senthil K Muthuswamy, Andrew Emili
Parallelized multidimensional analytic framework applied to mammary epithelial cells uncovers regulatory principles in EMT. Nature communications 14 (1) (2023)
Israel T Desta, Sergei Kotelnikov, George Jones, Usman Ghani, Mikhail Abyzov, Yaroslav Kholodov, Daron M Standley, Dmitri Beglov, Sandor Vajda, Dima Kozakov
The ClusPro AbEMap web server for the prediction of antibody epitopes. Nature protocols (2023)
Indranil Paul, Dante Bolzan, Ahmed Youssef, Keith A Gagnon, Heather Hook, Gopal Karemore, Michael U J Oliphant, Weiwei Lin, Qian Liu, Sadhna Phanse, Carl White, Dzmitry Padhorny, Sergei Kotelnikov, Christopher S Chen, Pingzhao Hu, Gerald V Denis, Dima Kozakov, Brian Raught, Trevor Siggers, Stefan Wuchty, Senthil K Muthuswamy, Andrew Emili
Parallelized multidimensional analytic framework applied to mammary epithelial cells uncovers regulatory principles in EMT. Nature communications 14 (1) (2023)
Indranil Paul, Dante Bolzan, Ahmed Youssef, Keith A Gagnon, Heather Hook, Gopal Karemore, Michael U J Oliphant, Weiwei Lin, Qian Liu, Sadhna Phanse, Carl White, Dzmitry Padhorny, Sergei Kotelnikov, Christopher S Chen, Pingzhao Hu, Gerald V Denis, Dima Kozakov, Brian Raught, Trevor Siggers, Stefan Wuchty, Senthil K Muthuswamy, Andrew Emili
Parallelized multidimensional analytic framework applied to mammary epithelial cells uncovers regulatory principles in EMT. Nature communications 14 (1) (2023)
Indranil Paul, Dante Bolzan, Ahmed Youssef, Keith A Gagnon, Heather Hook, Gopal Karemore, Michael U J Oliphant, Weiwei Lin, Qian Liu, Sadhna Phanse, Carl White, Dzmitry Padhorny, Sergei Kotelnikov, Christopher S Chen, Pingzhao Hu, Gerald V Denis, Dima Kozakov, Brian Raught, Trevor Siggers, Stefan Wuchty, Senthil K Muthuswamy, Andrew Emili
Parallelized multidimensional analytic framework applied to mammary epithelial cells uncovers regulatory principles in EMT. Nature communications 14 (1) (2023)
Shi-Jie Chen, Mubashir Hassan, Robert L Jernigan, Kejue Jia, Daisuke Kihara, Andrzej Kloczkowski, Sergei Kotelnikov, Dima Kozakov, Jie Liang, Adam Liwo, Silvina Matysiak, Jarek Meller, Cristian Micheletti, Julie C Mitchell, Sayantan Mondal, Ruth Nussinov, Kei-Ichi Okazaki, Dzmitry Padhorny, Jeffrey Skolnick, Tobin R Sosnick, George Stan, Ilya Vakser, Xiaoqin Zou, George D Rose
Opinion: Protein folds vs. protein folding: Differing questions, different challenges. Proceedings of the National Academy of Sciences of the United States of America 120 (1) (2022)
Ana Davila, Zichang Xu, Songling Li, John Rozewicki, Jan Wilamowski, Sergei Kotelnikov, Dima Kozakov, Shunsuke Teraguchi, Daron M Standley
AbAdapt: an adaptive approach to predicting antibody-antigen complex structures from sequence. Bioinformatics advances 2 (1) (2022)
Qisi Zhang, Cyrille S Kounde, Milon Mondal, Jake L Greenfield, Jennifer R Baker, Sergei Kotelnikov, Mikhail Ignatov, Christopher P Tinworth, Leran Zhang, Daniel Conole, Elena De Vita, Dima Kozakov, Adam McCluskey, John D Harling, Matthew John Fuchter, Edward William Tate
Light-mediated multi-target protein degradation using arylazopyrazole photoswitchable PROTACs (AP-PROTACs). Chemical communications (Cambridge, England) 58 (78) (2022)
Pierre C Havugimana, Raghuveera Kumar Goel, Sadhna Phanse, Ahmed Youssef, Dzmitry Padhorny, Sergei Kotelnikov, Dima Kozakov, Andrew Emili
Scalable multiplex co-fractionation/mass spectrometry platform for accelerated protein interactome discovery. Nature communications 13 (1) (2022)
Ana Davila, Zichang Xu, Songling Li, John Rozewicki, Jan Wilamowski, Sergei Kotelnikov, Dima Kozakov, Shunsuke Teraguchi, Daron M Standley
AbAdapt: an adaptive approach to predicting antibody-antigen complex structures from sequence. Bioinformatics advances 2 (1) (2022)
Shi-Jie Chen, Mubashir Hassan, Robert L Jernigan, Kejue Jia, Daisuke Kihara, Andrzej Kloczkowski, Sergei Kotelnikov, Dima Kozakov, Jie Liang, Adam Liwo, Silvina Matysiak, Jarek Meller, Cristian Micheletti, Julie C Mitchell, Sayantan Mondal, Ruth Nussinov, Kei-Ichi Okazaki, Dzmitry Padhorny, Jeffrey Skolnick, Tobin R Sosnick, George Stan, Ilya Vakser, Xiaoqin Zou, George D Rose
Opinion: Protein folds vs. protein folding: Differing questions, different challenges. Proceedings of the National Academy of Sciences of the United States of America 120 (1) (2022)
Shi-Jie Chen, Mubashir Hassan, Robert L Jernigan, Kejue Jia, Daisuke Kihara, Andrzej Kloczkowski, Sergei Kotelnikov, Dima Kozakov, Jie Liang, Adam Liwo, Silvina Matysiak, Jarek Meller, Cristian Micheletti, Julie C Mitchell, Sayantan Mondal, Ruth Nussinov, Kei-Ichi Okazaki, Dzmitry Padhorny, Jeffrey Skolnick, Tobin R Sosnick, George Stan, Ilya Vakser, Xiaoqin Zou, George D Rose
Opinion: Protein folds vs. protein folding: Differing questions, different challenges. Proceedings of the National Academy of Sciences of the United States of America 120 (1) (2022)
Shi-Jie Chen, Mubashir Hassan, Robert L Jernigan, Kejue Jia, Daisuke Kihara, Andrzej Kloczkowski, Sergei Kotelnikov, Dima Kozakov, Jie Liang, Adam Liwo, Silvina Matysiak, Jarek Meller, Cristian Micheletti, Julie C Mitchell, Sayantan Mondal, Ruth Nussinov, Kei-Ichi Okazaki, Dzmitry Padhorny, Jeffrey Skolnick, Tobin R Sosnick, George Stan, Ilya Vakser, Xiaoqin Zou, George D Rose
Opinion: Protein folds vs. protein folding: Differing questions, different challenges. Proceedings of the National Academy of Sciences of the United States of America 120 (1) (2022)
Shi-Jie Chen, Mubashir Hassan, Robert L Jernigan, Kejue Jia, Daisuke Kihara, Andrzej Kloczkowski, Sergei Kotelnikov, Dima Kozakov, Jie Liang, Adam Liwo, Silvina Matysiak, Jarek Meller, Cristian Micheletti, Julie C Mitchell, Sayantan Mondal, Ruth Nussinov, Kei-Ichi Okazaki, Dzmitry Padhorny, Jeffrey Skolnick, Tobin R Sosnick, George Stan, Ilya Vakser, Xiaoqin Zou, George D Rose
Opinion: Protein folds vs. protein folding: Differing questions, different challenges. Proceedings of the National Academy of Sciences of the United States of America 120 (1) (2022)
Shi-Jie Chen, Mubashir Hassan, Robert L Jernigan, Kejue Jia, Daisuke Kihara, Andrzej Kloczkowski, Sergei Kotelnikov, Dima Kozakov, Jie Liang, Adam Liwo, Silvina Matysiak, Jarek Meller, Cristian Micheletti, Julie C Mitchell, Sayantan Mondal, Ruth Nussinov, Kei-Ichi Okazaki, Dzmitry Padhorny, Jeffrey Skolnick, Tobin R Sosnick, George Stan, Ilya Vakser, Xiaoqin Zou, George D Rose
Opinion: Protein folds vs. protein folding: Differing questions, different challenges. Proceedings of the National Academy of Sciences of the United States of America 120 (1) (2022)
Shi-Jie Chen, Mubashir Hassan, Robert L Jernigan, Kejue Jia, Daisuke Kihara, Andrzej Kloczkowski, Sergei Kotelnikov, Dima Kozakov, Jie Liang, Adam Liwo, Silvina Matysiak, Jarek Meller, Cristian Micheletti, Julie C Mitchell, Sayantan Mondal, Ruth Nussinov, Kei-Ichi Okazaki, Dzmitry Padhorny, Jeffrey Skolnick, Tobin R Sosnick, George Stan, Ilya Vakser, Xiaoqin Zou, George D Rose
Opinion: Protein folds vs. protein folding: Differing questions, different challenges. Proceedings of the National Academy of Sciences of the United States of America 120 (1) (2022)
Shi-Jie Chen, Mubashir Hassan, Robert L Jernigan, Kejue Jia, Daisuke Kihara, Andrzej Kloczkowski, Sergei Kotelnikov, Dima Kozakov, Jie Liang, Adam Liwo, Silvina Matysiak, Jarek Meller, Cristian Micheletti, Julie C Mitchell, Sayantan Mondal, Ruth Nussinov, Kei-Ichi Okazaki, Dzmitry Padhorny, Jeffrey Skolnick, Tobin R Sosnick, George Stan, Ilya Vakser, Xiaoqin Zou, George D Rose
Opinion: Protein folds vs. protein folding: Differing questions, different challenges. Proceedings of the National Academy of Sciences of the United States of America 120 (1) (2022)