Saikat Chowdhury

Scopus Author ID ORCID

Publication Activity (10 Years)

Years Active: 2017-2024
Publications (10 Years): 31

Top Venues

Molecular cancer research : MCR

NPJ precision oncology

Science (New York, N.Y.)

JCO precision oncology

University of Texas MD Anderson Cancer Center

Academy of Scientific & Innovative Research (PHD)

This page only lists publications with an associated author ORCID identifier.

Affiliation History

University of Texas MD Anderson Cancer Center Oct 01 2019

United States

POSTDOCTORAL FELLOW :: GI MEDICAL ONCOLOGY -RESEARCH

CSIR-National Chemical Laboratory Apr 05 2012 - Sep 30 2019

India

Research Scholar :: Biological Sciences

Centre for Cellular and Molecular Biology CSIR Oct 09 2011 - Apr 04 2012

India

Project JRF :: Mathematical modeling

Education History

Academy of Scientific & Innovative Research Aug 01 2013 - Apr 26 2019

India

PHD :: BIOLOGICAL SCIENCES

University of Calcutta Jun 01 2009 - Apr 01 2011

India

MSC :: Biophysics, Molecular Biology & Bioinformatics

University of North Bengal Jul 01 2006 - Apr 01 2009

India

BSC :: Physics

Publications

Abdelrahman M G Yousef, Mahmoud M G Yousef, Saikat Chowdhury, Kawther Abdilleh, Mark Knafl, Paul Edelkamp, Kristin Alfaro-Munoz, Ray Chacko, Jennifer Peterson, Brandon G Smaglo, Robert A Wolff, Shubham Pant, Michael S Lee, Jason A Willis, Michael Overman, Sudheer Doss, Lynn M Matrisian, Mark W Hurd, Rebecca Snyder, Matthew H G Katz, Huamin Wang, Anirban Maitra, John Paul Shen, Dan Zhao
Impact of KRAS mutations and co-mutations on clinical outcomes in pancreatic ductal adenocarcinoma. NPJ precision oncology 8 (1) (2024)
Vinay K Pattalachinti, Ichiaki Ito, Saikat Chowdhury, Abdelrahman M G Yousef, Yue Gu, Betul Beyza Gunes, Emma R Salle, Melissa W Taggart, Keith F Fournier, Natalie Wall Fowlkes, John Paul Shen
Peritoneal Microenvironment Promotes Appendiceal Adenocarcinoma Growth: A Multi-omics Approach Using Patient-Derived Xenografts. Molecular cancer research : MCR 22 (4) (2024)
Kangyu Lin, Saikat Chowdhury, Mohammad A Zeineddine, Fadl A Zeineddine, Nicholas J Hornstein, Oscar Eduardo Villarreal, Dipen Maheshbhai Maru, Cara L Haymaker, Jean-Nicholas Vauthey, George J Chang, Elena Bogatenkova, David G Menter, Edmund S Kopetz, John Paul Shen
Identification of Colorectal Cancer Cell Stemness from Single-Cell RNA Sequencing. Molecular cancer research : MCR 22 (4) (2024)
Vinay K Pattalachinti, Ichiaki Ito, Saikat Chowdhury, Abdelrahman M G Yousef, Yue Gu, Betul Beyza Gunes, Emma R Salle, Melissa W Taggart, Keith F Fournier, Natalie Wall Fowlkes, John Paul Shen
Peritoneal Microenvironment Promotes Appendiceal Adenocarcinoma Growth: A Multi-omics Approach Using Patient-Derived Xenografts. Molecular cancer research : MCR 22 (4) (2024)
Jeffrey A Klomp, Jennifer E Klomp, Clint A Stalnecker, Kirsten L Bryant, A Cole Edwards, Kristina Drizyte-Miller, Priya S Hibshman, J Nathaniel Diehl, Ye S Lee, Alexis J Morales, Khalilah E Taylor, Sen Peng, Nhan L Tran, Laura E Herring, Alex W Prevatte, Natalie K Barker, Laura D Hover, Jill Hallin, Saikat Chowdhury, Oluwadara Coker, Hey Min Lee, Craig M Goodwin, Prson Gautam, Peter Olson, James G Christensen, John Paul Shen, Edmund S Kopetz, Lee M Graves, Kian-Huat Lim, Andrea Wang-Gillam, Krister Wennerberg, Adrienne D Cox, Channing J Der
Defining the KRAS- and ERK-dependent transcriptome in KRAS-mutant cancers. Science (New York, N.Y.) 384 (6700) (2024)
Vinay K Pattalachinti, Ichiaki Ito, Saikat Chowdhury, Abdelrahman M G Yousef, Yue Gu, Betul Beyza Gunes, Emma R Salle, Melissa W Taggart, Keith F Fournier, Natalie Wall Fowlkes, John Paul Shen
Peritoneal Microenvironment Promotes Appendiceal Adenocarcinoma Growth: A Multi-omics Approach Using Patient-Derived Xenografts. Molecular cancer research : MCR (2024)
Vinay K Pattalachinti, Ichiaki Ito, Saikat Chowdhury, Abdelrahman M G Yousef, Yue Gu, Betul Beyza Gunes, Emma R Salle, Melissa W Taggart, Keith F Fournier, Natalie Wall Fowlkes, John Paul Shen
Peritoneal Microenvironment Promotes Appendiceal Adenocarcinoma Growth: A Multi-omics Approach Using Patient-Derived Xenografts. Molecular cancer research : MCR 22 (4) (2024)
Abdelrahman M G Yousef, Mahmoud M G Yousef, Saikat Chowdhury, Kawther Abdilleh, Mark Knafl, Paul Edelkamp, Kristin Alfaro-Munoz, Ray Chacko, Jennifer Peterson, Brandon G Smaglo, Robert A Wolff, Shubham Pant, Michael S Lee, Jason A Willis, Michael Overman, Sudheer Doss, Lynn M Matrisian, Mark W Hurd, Rebecca Snyder, Matthew H G Katz, Huamin Wang, Anirban Maitra, John Paul Shen, Dan Zhao
Impact of KRAS mutations and co-mutations on clinical outcomes in pancreatic ductal adenocarcinoma. NPJ precision oncology 8 (1) (2024)
Jeffrey A Klomp, Jennifer E Klomp, Clint A Stalnecker, Kirsten L Bryant, A Cole Edwards, Kristina Drizyte-Miller, Priya S Hibshman, J Nathaniel Diehl, Ye S Lee, Alexis J Morales, Khalilah E Taylor, Sen Peng, Nhan L Tran, Laura E Herring, Alex W Prevatte, Natalie K Barker, Laura D Hover, Jill Hallin, Alexey Sorokin, Preeti Marie Kanikarla, Saikat Chowdhury, Oluwadara Coker, Hey Min Lee, Craig M Goodwin, Prson Gautam, Peter Olson, James G Christensen, John Paul Shen, Edmund S Kopetz, Lee M Graves, Kian-Huat Lim, Andrea Wang-Gillam, Krister Wennerberg, Adrienne D Cox, Channing J Der
Defining the KRAS- and ERK-dependent transcriptome in KRAS-mutant cancers. Science (New York, N.Y.) 384 (6700) (2024)
Jeffrey A Klomp, Jennifer E Klomp, Clint A Stalnecker, Kirsten L Bryant, A Cole Edwards, Kristina Drizyte-Miller, Priya S Hibshman, J Nathaniel Diehl, Ye S Lee, Alexis J Morales, Khalilah E Taylor, Sen Peng, Nhan L Tran, Laura E Herring, Alex W Prevatte, Natalie K Barker, Laura D Hover, Jill Hallin, Saikat Chowdhury, Oluwadara Coker, Hey Min Lee, Craig M Goodwin, Prson Gautam, Peter Olson, James G Christensen, John Paul Shen, Edmund S Kopetz, Lee M Graves, Kian-Huat Lim, Andrea Wang-Gillam, Krister Wennerberg, Adrienne D Cox, Channing J Der
Defining the KRAS- and ERK-dependent transcriptome in KRAS-mutant cancers. Science (New York, N.Y.) 384 (6700) (2024)
Vinay K Pattalachinti, Ichiaki Ito, Saikat Chowdhury, Abdelrahman M G Yousef, Yue Gu, Betul Beyza Gunes, Emma R Salle, Melissa W Taggart, Keith F Fournier, Natalie Wall Fowlkes, John Paul Shen
Peritoneal Microenvironment Promotes Appendiceal Adenocarcinoma Growth: A Multi-omics Approach Using Patient-Derived Xenografts. Molecular cancer research : MCR 22 (4) (2024)
Abdelrahman M G Yousef, Mahmoud M G Yousef, Saikat Chowdhury, Kawther Abdilleh, Mark Knafl, Paul Edelkamp, Kristin Alfaro-Munoz, Ray Chacko, Jennifer Peterson, Brandon G Smaglo, Robert A Wolff, Shubham Pant, Michael S Lee, Jason A Willis, Michael Overman, Sudheer Doss, Lynn M Matrisian, Mark W Hurd, Rebecca Snyder, Matthew H G Katz, Huamin Wang, Anirban Maitra, John Paul Shen, Dan Zhao
Impact of KRAS mutations and co-mutations on clinical outcomes in pancreatic ductal adenocarcinoma. NPJ precision oncology 8 (1) (2024)
Jeffrey A Klomp, Jennifer E Klomp, Clint A Stalnecker, Kirsten L Bryant, A Cole Edwards, Kristina Drizyte-Miller, Priya S Hibshman, J Nathaniel Diehl, Ye S Lee, Alexis J Morales, Khalilah E Taylor, Sen Peng, Nhan L Tran, Laura E Herring, Alex W Prevatte, Natalie K Barker, Laura D Hover, Jill Hallin, Saikat Chowdhury, Oluwadara Coker, Hey Min Lee, Craig M Goodwin, Prson Gautam, Peter Olson, James G Christensen, John Paul Shen, Edmund S Kopetz, Lee M Graves, Kian-Huat Lim, Andrea Wang-Gillam, Krister Wennerberg, Adrienne D Cox, Channing J Der
Defining the KRAS- and ERK-dependent transcriptome in KRAS-mutant cancers. Science (New York, N.Y.) 384 (6700) (2024)
Kangyu Lin, Saikat Chowdhury, Mohammad A Zeineddine, Fadl A Zeineddine, Nicholas J Hornstein, Oscar Eduardo Villarreal, Dipen Maheshbhai Maru, Cara L Haymaker, Jean-Nicholas Vauthey, George J Chang, Elena Bogatenkova, David G Menter, Edmund S Kopetz, John Paul Shen
Identification of Colorectal Cancer Cell Stemness from Single-Cell RNA Sequencing. Molecular cancer research : MCR 22 (4) (2024)
Abdelrahman M G Yousef, Mahmoud M G Yousef, Saikat Chowdhury, Kawther Abdilleh, Mark Knafl, Paul Edelkamp, Kristin Alfaro-Munoz, Ray Chacko, Jennifer Peterson, Brandon G Smaglo, Robert A Wolff, Shubham Pant, Michael S Lee, Jason A Willis, Michael Overman, Sudheer Doss, Lynn M Matrisian, Mark W Hurd, Rebecca Snyder, Matthew H G Katz, Huamin Wang, Anirban Maitra, John Paul Shen, Dan Zhao
Impact of KRAS mutations and co-mutations on clinical outcomes in pancreatic ductal adenocarcinoma. NPJ precision oncology 8 (1) (2024)
Kangyu Lin, Saikat Chowdhury, Mohammad A Zeineddine, Fadl A Zeineddine, Nicholas J Hornstein, Oscar Eduardo Villarreal, Dipen Maheshbhai Maru, Cara L Haymaker, Jean-Nicholas Vauthey, George J Chang, Elena Bogatenkova, David G Menter, Edmund S Kopetz, John Paul Shen
Identification of Colorectal Cancer Cell Stemness from Single-Cell RNA Sequencing. Molecular cancer research : MCR 22 (4) (2024)
Kangyu Lin, Saikat Chowdhury, Mohammad A Zeineddine, Fadl A Zeineddine, Nicholas J Hornstein, Oscar Eduardo Villarreal, Dipen Maheshbhai Maru, Cara L Haymaker, Jean-Nicholas Vauthey, George J Chang, Elena Bogatenkova, David G Menter, Edmund S Kopetz, John Paul Shen
Identification of Colorectal Cancer Cell Stemness from Single-Cell RNA Sequencing. Molecular cancer research : MCR 22 (4) (2024)
Abdelrahman M G Yousef, Mahmoud M G Yousef, Saikat Chowdhury, Kawther Abdilleh, Mark Knafl, Paul Edelkamp, Kristin Alfaro-Munoz, Ray Chacko, Jennifer Peterson, Brandon G Smaglo, Robert A Wolff, Shubham Pant, Michael S Lee, Jason A Willis, Michael Overman, Sudheer Doss, Lynn M Matrisian, Mark W Hurd, Rebecca Snyder, Matthew H G Katz, Huamin Wang, Anirban Maitra, John Paul Shen, Dan Zhao
Impact of KRAS mutations and co-mutations on clinical outcomes in pancreatic ductal adenocarcinoma. NPJ precision oncology 8 (1) (2024)
Jeffrey A Klomp, Jennifer E Klomp, Clint A Stalnecker, Kirsten L Bryant, A Cole Edwards, Kristina Drizyte-Miller, Priya S Hibshman, J Nathaniel Diehl, Ye S Lee, Alexis J Morales, Khalilah E Taylor, Sen Peng, Nhan L Tran, Laura E Herring, Alex W Prevatte, Natalie K Barker, Laura D Hover, Jill Hallin, Saikat Chowdhury, Oluwadara Coker, Hey Min Lee, Craig M Goodwin, Prson Gautam, Peter Olson, James G Christensen, John Paul Shen, Edmund S Kopetz, Lee M Graves, Kian-Huat Lim, Andrea Wang-Gillam, Krister Wennerberg, Adrienne D Cox, Channing J Der
Defining the KRAS- and ERK-dependent transcriptome in KRAS-mutant cancers. Science (New York, N.Y.) 384 (6700) (2024)
Fadl A Zeineddine, Mohammad A Zeineddine, Abdelrahman M G Yousef, Yue Gu, Saikat Chowdhury, Arvind Dasari, Ryan W Huey, Benny Johnson, Bryan Kee, Michael S Lee, Maria Pia Morelli, Van K Morris, Michael J Overman, Christine Parseghian, Kanwal P S Raghav, Jason A Willis, Robert A Wolff, Yoshikuni Kawaguchi, Jean-Nicolas Vauthey, Ryan Sun, Scott Kopetz, John Paul Shen
Survival improvement for patients with metastatic colorectal cancer over twenty years. NPJ precision oncology 7 (1) (2023)
Saikat Chowdhury, Ria Gupta, Joshua Millstein, Kangyu Lin, Valsala Haridas, Mohammad A Zeineddine, Christine M Parseghian, Heinz-Josef Lenz, Edmund S Kopetz, John Paul Shen
Transcriptional Profiling and Consensus Molecular Subtype Assignment to Understand Response and Resistance to Anti-Epidermal Growth Factor Receptor Therapy in Colorectal Cancer. JCO precision oncology 7 (2023)
Ichiaki Ito, Abdelrahman M G Yousef, Saikat Chowdhury, Princess N Dickson, Zahra Alavi Naini, Michael G White, Karianne Giller Fleten, Norman John Carr, Keith F Fournier, Natalie Wall Fowlkes, John Paul Shen
Intraperitoneal paclitaxel is a safe and effective therapeutic strategy for treating mucinous appendiceal adenocarcinoma. Cancer research (2023)
Dan Zhao, Abdelrahman M G Yousef, Mahmoud Yousef, Saikat Chowdhury, Kawther Abdilleh, Mark Knafl, Paul Edelkamp, Kristin Alfaro-Munoz, Ray Chacko, Jennifer Peterson, Brandon G Smaglo, Robert A Wolff Wolff, Shubham Pant, Michael Lee, Jason A Willis, Michael Overman, Sudheer Doss, Lynn Matrisian, Mark Hurd, Rebecca Snyder, Matthew Katz, Huamin Wang, Anirban Maitra, John Paul Shen
Impact of KRAS Mutations and Co-mutations on Clinical Outcome in Pancreatic Ductal Adenocarcinoma. Research square (2023)
Fadl A Zeineddine, Mohammad A Zeineddine, Abdelrahman M G Yousef, Yue Gu, Saikat Chowdhury, Arvind Dasari, Ryan W Huey, Benny Johnson, Bryan Kee, Michael S Lee, Maria Pia Morelli, Van K Morris, Michael J Overman, Christine Parseghian, Kanwal P S Raghav, Jason A Willis, Robert A Wolff, Yoshikuni Kawaguchi, Jean-Nicolas Vauthey, Ryan Sun, Scott Kopetz, John Paul Shen
Survival improvement for patients with metastatic colorectal cancer over twenty years. NPJ precision oncology 7 (1) (2023)
Kangyu Lin, Saikat Chowdhury, Mohammad A Zeineddine, Fadl A Zeineddine, Nicholas J Hornstein, Oscar Eduardo Villarreal, Dipen Maheshbhai Maru, Cara L Haymaker, Jean-Nicholas Vauthey, George J Chang, Elena Bogatenkova, David G Menter, Edmund S Kopetz, John Paul Shen
Identification of colorectal cancer cell stemness from single-cell RNA sequencing. Molecular cancer research : MCR (2023)
Fadl A Zeineddine, Mohammad A Zeineddine, Abdelrahman M G Yousef, Yue Gu, Saikat Chowdhury, Arvind Dasari, Ryan W Huey, Benny Johnson, Bryan Kee, Michael S Lee, Maria Pia Morelli, Van K Morris, Michael J Overman, Christine Parseghian, Kanwal P S Raghav, Jason A Willis, Robert A Wolff, Yoshikuni Kawaguchi, Jean-Nicolas Vauthey, Ryan Sun, Scott Kopetz, John Paul Shen
Survival improvement for patients with metastatic colorectal cancer over twenty years. NPJ precision oncology 7 (1) (2023)
Saikat Chowdhury, Matan Hofree, Kangyu Lin, Dipen Maru, Scott Kopetz, John Paul Shen
Implications of Intratumor Heterogeneity on Consensus Molecular Subtype (CMS) in Colorectal Cancer. Cancers 13 (19) (2021)
Saikat Chowdhury, Ram Rup Sarkar
Exploring Notch Pathway to Elucidate Phenotypic Plasticity and Intra-tumor Heterogeneity in Gliomas. Scientific reports 9 (1) (2019)
Noopur Sinha, Saikat Chowdhury, Ram Rup Sarkar
Molecular basis of drug resistance in smoothened receptor: An in silico study of protein resistivity and specificity. Proteins 88 (3) (2019)
Saikat Chowdhury, Noopur Sinha, Piyali Ganguli, Rupa Bhowmick, Vidhi Singh, Sutanu Nandi, Ram Rup Sarkar
BIOPYDB: A Dynamic Human Cell Specific Biochemical Pathway Database with Advanced Computational Analyses Platform. Journal of integrative bioinformatics 15 (3) (2018)
Noopur Sinha, Saikat Chowdhury, Ram Rup Sarkar
Deciphering structural stability and binding mechanisms of potential antagonists with smoothened protein. Journal of biomolecular structure & dynamics 36 (11) (2017)

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Publication Activity (10 Years)

Top Topics

Top Venues

Saikat Chowdhury