John Paul Shen (John P Shen)

Scopus Author ID ORCID

Publication Activity (10 Years)

Years Active: 2017-2024
Publications (10 Years): 53

Top Topics

Epidermal Growth Factor Receptor

Top Venues

Molecular cancer research : MCR

NPJ precision oncology

Cancer research communications

Science (New York, N.Y.)

This page only lists publications with an associated author ORCID identifier.

Publications

Abdelrahman M G Yousef, Mahmoud M G Yousef, Saikat Chowdhury, Kawther Abdilleh, Mark Knafl, Paul Edelkamp, Kristin Alfaro-Munoz, Ray Chacko, Jennifer Peterson, Brandon G Smaglo, Robert A Wolff, Shubham Pant, Michael S Lee, Jason A Willis, Michael Overman, Sudheer Doss, Lynn M Matrisian, Mark W Hurd, Rebecca Snyder, Matthew H G Katz, Huamin Wang, Anirban Maitra, John Paul Shen, Dan Zhao
Impact of KRAS mutations and co-mutations on clinical outcomes in pancreatic ductal adenocarcinoma. NPJ precision oncology 8 (1) (2024)
Neal Bhutiani, Mahmoud M G Yousef, Abdelrahman M G Yousef, Mohammad A Zeineddine, Mark Knafl, Olivia Ratliff, Uditha P Fernando, Anastasia Turin, Fadl A Zeineddine, Jeff Jin, Kristin Alfaro-Munoz, Drew Goldstein, George J Chang, Edmund S Kopetz, John Paul Shen, Abhineet Uppal
Automated, High-Throughput Platform to Generate a High-Reliability, Comprehensive Rectal Cancer Database. JCO clinical cancer informatics 8 (2024)
Vinay K Pattalachinti, Ichiaki Ito, Saikat Chowdhury, Abdelrahman M G Yousef, Yue Gu, Betul Beyza Gunes, Emma R Salle, Melissa W Taggart, Keith F Fournier, Natalie Wall Fowlkes, John Paul Shen
Peritoneal Microenvironment Promotes Appendiceal Adenocarcinoma Growth: A Multi-omics Approach Using Patient-Derived Xenografts. Molecular cancer research : MCR 22 (4) (2024)
Kangyu Lin, Saikat Chowdhury, Mohammad A Zeineddine, Fadl A Zeineddine, Nicholas J Hornstein, Oscar Eduardo Villarreal, Dipen Maheshbhai Maru, Cara L Haymaker, Jean-Nicholas Vauthey, George J Chang, Elena Bogatenkova, David G Menter, Edmund S Kopetz, John Paul Shen
Identification of Colorectal Cancer Cell Stemness from Single-Cell RNA Sequencing. Molecular cancer research : MCR 22 (4) (2024)
Saikat Chowdhury, Joanne Xiu, Jennifer R Ribeiro, Theodore Nicolaides, Jian Zhang, W Michael Korn, Kelsey A Poorman, Heinz-Josef Lenz, John L Marshall, Matthew J Oberley, George W Sledge, David Spetzler, Edmund S Kopetz, John Paul Shen
Consensus molecular subtyping of metastatic colorectal cancer expands biomarker-directed therapeutic benefit for patients with CMS1 and CMS2 tumors. British journal of cancer (2024)
Nicholas J Hornstein, Mohammad A Zeineddine, Betul Beyza Gunes, Andrew J Pellatt, Mark Knafl, Haifeng Zhu, Anneleis F Willett, Abdelrahman M G Yousef, Suyu Liu, Ryan Sun, P Andrew Futreal, Scott E Woodman, Melissa W Taggart, Michael James Overman, Daniel M Halperin, Kanwal P S Raghav, John Paul Shen
Efficacy and Safety of Atezolizumab and Bevacizumab in Appendiceal Adenocarcinoma. Cancer research communications 4 (5) (2024)
Vinay K Pattalachinti, Ichiaki Ito, Saikat Chowdhury, Abdelrahman M G Yousef, Yue Gu, Betul Beyza Gunes, Emma R Salle, Melissa W Taggart, Keith F Fournier, Natalie Wall Fowlkes, John Paul Shen
Peritoneal Microenvironment Promotes Appendiceal Adenocarcinoma Growth: A Multi-omics Approach Using Patient-Derived Xenografts. Molecular cancer research : MCR 22 (4) (2024)
Jeffrey A Klomp, Jennifer E Klomp, Clint A Stalnecker, Kirsten L Bryant, A Cole Edwards, Kristina Drizyte-Miller, Priya S Hibshman, J Nathaniel Diehl, Ye S Lee, Alexis J Morales, Khalilah E Taylor, Sen Peng, Nhan L Tran, Laura E Herring, Alex W Prevatte, Natalie K Barker, Laura D Hover, Jill Hallin, Saikat Chowdhury, Oluwadara Coker, Hey Min Lee, Craig M Goodwin, Prson Gautam, Peter Olson, James G Christensen, John Paul Shen, Edmund S Kopetz, Lee M Graves, Kian-Huat Lim, Andrea Wang-Gillam, Krister Wennerberg, Adrienne D Cox, Channing J Der
Defining the KRAS- and ERK-dependent transcriptome in KRAS-mutant cancers. Science (New York, N.Y.) 384 (6700) (2024)
Vinay K Pattalachinti, Ichiaki Ito, Saikat Chowdhury, Abdelrahman M G Yousef, Yue Gu, Betul Beyza Gunes, Emma R Salle, Melissa W Taggart, Keith F Fournier, Natalie Wall Fowlkes, John Paul Shen
Peritoneal Microenvironment Promotes Appendiceal Adenocarcinoma Growth: A Multi-omics Approach Using Patient-Derived Xenografts. Molecular cancer research : MCR (2024)
Vinay K Pattalachinti, Ichiaki Ito, Saikat Chowdhury, Abdelrahman M G Yousef, Yue Gu, Betul Beyza Gunes, Emma R Salle, Melissa W Taggart, Keith F Fournier, Natalie Wall Fowlkes, John Paul Shen
Peritoneal Microenvironment Promotes Appendiceal Adenocarcinoma Growth: A Multi-omics Approach Using Patient-Derived Xenografts. Molecular cancer research : MCR 22 (4) (2024)
Abdelrahman M G Yousef, Mahmoud M G Yousef, Saikat Chowdhury, Kawther Abdilleh, Mark Knafl, Paul Edelkamp, Kristin Alfaro-Munoz, Ray Chacko, Jennifer Peterson, Brandon G Smaglo, Robert A Wolff, Shubham Pant, Michael S Lee, Jason A Willis, Michael Overman, Sudheer Doss, Lynn M Matrisian, Mark W Hurd, Rebecca Snyder, Matthew H G Katz, Huamin Wang, Anirban Maitra, John Paul Shen, Dan Zhao
Impact of KRAS mutations and co-mutations on clinical outcomes in pancreatic ductal adenocarcinoma. NPJ precision oncology 8 (1) (2024)
Jeffrey A Klomp, Jennifer E Klomp, Clint A Stalnecker, Kirsten L Bryant, A Cole Edwards, Kristina Drizyte-Miller, Priya S Hibshman, J Nathaniel Diehl, Ye S Lee, Alexis J Morales, Khalilah E Taylor, Sen Peng, Nhan L Tran, Laura E Herring, Alex W Prevatte, Natalie K Barker, Laura D Hover, Jill Hallin, Alexey Sorokin, Preeti Marie Kanikarla, Saikat Chowdhury, Oluwadara Coker, Hey Min Lee, Craig M Goodwin, Prson Gautam, Peter Olson, James G Christensen, John Paul Shen, Edmund S Kopetz, Lee M Graves, Kian-Huat Lim, Andrea Wang-Gillam, Krister Wennerberg, Adrienne D Cox, Channing J Der
Defining the KRAS- and ERK-dependent transcriptome in KRAS-mutant cancers. Science (New York, N.Y.) 384 (6700) (2024)
Nicholas J Hornstein, Mohammad A Zeineddine, Betul Beyza Gunes, Andrew J Pellatt, Mark Knafl, Haifeng Zhu, Anneleis F Willett, Abdelrahman M G Yousef, Suyu Liu, Ryan Sun, P Andrew Futreal, Scott E Woodman, Melissa W Taggart, Michael James Overman, Daniel M Halperin, Kanwal P S Raghav, John Paul Shen
Efficacy and safety of atezolizumab and bevacizumab in appendiceal adenocarcinoma. Cancer research communications (2024)
Jeffrey A Klomp, Jennifer E Klomp, Clint A Stalnecker, Kirsten L Bryant, A Cole Edwards, Kristina Drizyte-Miller, Priya S Hibshman, J Nathaniel Diehl, Ye S Lee, Alexis J Morales, Khalilah E Taylor, Sen Peng, Nhan L Tran, Laura E Herring, Alex W Prevatte, Natalie K Barker, Laura D Hover, Jill Hallin, Saikat Chowdhury, Oluwadara Coker, Hey Min Lee, Craig M Goodwin, Prson Gautam, Peter Olson, James G Christensen, John Paul Shen, Edmund S Kopetz, Lee M Graves, Kian-Huat Lim, Andrea Wang-Gillam, Krister Wennerberg, Adrienne D Cox, Channing J Der
Defining the KRAS- and ERK-dependent transcriptome in KRAS-mutant cancers. Science (New York, N.Y.) 384 (6700) (2024)
Vinay K Pattalachinti, Ichiaki Ito, Saikat Chowdhury, Abdelrahman M G Yousef, Yue Gu, Betul Beyza Gunes, Emma R Salle, Melissa W Taggart, Keith F Fournier, Natalie Wall Fowlkes, John Paul Shen
Peritoneal Microenvironment Promotes Appendiceal Adenocarcinoma Growth: A Multi-omics Approach Using Patient-Derived Xenografts. Molecular cancer research : MCR 22 (4) (2024)
Nicholas J Hornstein, Mohammad A Zeineddine, Betul Beyza Gunes, Andrew J Pellatt, Mark Knafl, Haifeng Zhu, Anneleis F Willett, Abdelrahman M G Yousef, Suyu Liu, Ryan Sun, P Andrew Futreal, Scott E Woodman, Melissa W Taggart, Michael James Overman, Daniel M Halperin, Kanwal P S Raghav, John Paul Shen
Efficacy and Safety of Atezolizumab and Bevacizumab in Appendiceal Adenocarcinoma. Cancer research communications 4 (5) (2024)
Abdelrahman M G Yousef, Mahmoud M G Yousef, Saikat Chowdhury, Kawther Abdilleh, Mark Knafl, Paul Edelkamp, Kristin Alfaro-Munoz, Ray Chacko, Jennifer Peterson, Brandon G Smaglo, Robert A Wolff, Shubham Pant, Michael S Lee, Jason A Willis, Michael Overman, Sudheer Doss, Lynn M Matrisian, Mark W Hurd, Rebecca Snyder, Matthew H G Katz, Huamin Wang, Anirban Maitra, John Paul Shen, Dan Zhao
Impact of KRAS mutations and co-mutations on clinical outcomes in pancreatic ductal adenocarcinoma. NPJ precision oncology 8 (1) (2024)
Jeffrey A Klomp, Jennifer E Klomp, Clint A Stalnecker, Kirsten L Bryant, A Cole Edwards, Kristina Drizyte-Miller, Priya S Hibshman, J Nathaniel Diehl, Ye S Lee, Alexis J Morales, Khalilah E Taylor, Sen Peng, Nhan L Tran, Laura E Herring, Alex W Prevatte, Natalie K Barker, Laura D Hover, Jill Hallin, Saikat Chowdhury, Oluwadara Coker, Hey Min Lee, Craig M Goodwin, Prson Gautam, Peter Olson, James G Christensen, John Paul Shen, Edmund S Kopetz, Lee M Graves, Kian-Huat Lim, Andrea Wang-Gillam, Krister Wennerberg, Adrienne D Cox, Channing J Der
Defining the KRAS- and ERK-dependent transcriptome in KRAS-mutant cancers. Science (New York, N.Y.) 384 (6700) (2024)
Nicholas J Hornstein, Mohammad A Zeineddine, Betul Beyza Gunes, Andrew J Pellatt, Mark Knafl, Haifeng Zhu, Anneleis F Willett, Abdelrahman M G Yousef, Suyu Liu, Ryan Sun, P Andrew Futreal, Scott E Woodman, Melissa W Taggart, Michael James Overman, Daniel M Halperin, Kanwal P S Raghav, John Paul Shen
Efficacy and safety of atezolizumab and bevacizumab in appendiceal adenocarcinoma. Cancer research communications (2024)
Erika Belmont, Varun V Bansal, Mahmoud M G Yousef, Mohammad A Zeineddine, David G Su, Ankit Dhiman, Chih-Yi Liao, Blasé N Polite, Oliver S Eng, Keith F Fournier, Michael G White, Kiran Kalyan Turaga, John Paul Shen, Ardaman Shergill
Multi-Institutional Study Evaluating the Role of Circulating Tumor DNA in the Management of Appendiceal Cancers. JCO precision oncology 8 (2024)
Saikat Chowdhury, Joanne Xiu, Jennifer R Ribeiro, Theodore Nicolaides, Jian Zhang, W Michael Korn, Kelsey A Poorman, Heinz-Josef Lenz, John L Marshall, Matthew J Oberley, George W Sledge, David Spetzler, Edmund S Kopetz, John Paul Shen
Consensus molecular subtyping of metastatic colorectal cancer expands biomarker-directed therapeutic benefit for patients with CMS1 and CMS2 tumors. British journal of cancer (2024)
Erika Belmont, Varun V Bansal, Mahmoud M G Yousef, Mohammad A Zeineddine, David G Su, Ankit Dhiman, Chih-Yi Liao, Blasé N Polite, Oliver S Eng, Keith F Fournier, Michael G White, Kiran Kalyan Turaga, John Paul Shen, Ardaman Shergill
Multi-Institutional Study Evaluating the Role of Circulating Tumor DNA in the Management of Appendiceal Cancers. JCO precision oncology 8 (2024)
Kangyu Lin, Saikat Chowdhury, Mohammad A Zeineddine, Fadl A Zeineddine, Nicholas J Hornstein, Oscar Eduardo Villarreal, Dipen Maheshbhai Maru, Cara L Haymaker, Jean-Nicholas Vauthey, George J Chang, Elena Bogatenkova, David G Menter, Edmund S Kopetz, John Paul Shen
Identification of Colorectal Cancer Cell Stemness from Single-Cell RNA Sequencing. Molecular cancer research : MCR 22 (4) (2024)
Abdelrahman M G Yousef, Mahmoud M G Yousef, Saikat Chowdhury, Kawther Abdilleh, Mark Knafl, Paul Edelkamp, Kristin Alfaro-Munoz, Ray Chacko, Jennifer Peterson, Brandon G Smaglo, Robert A Wolff, Shubham Pant, Michael S Lee, Jason A Willis, Michael Overman, Sudheer Doss, Lynn M Matrisian, Mark W Hurd, Rebecca Snyder, Matthew H G Katz, Huamin Wang, Anirban Maitra, John Paul Shen, Dan Zhao
Impact of KRAS mutations and co-mutations on clinical outcomes in pancreatic ductal adenocarcinoma. NPJ precision oncology 8 (1) (2024)
Kangyu Lin, Saikat Chowdhury, Mohammad A Zeineddine, Fadl A Zeineddine, Nicholas J Hornstein, Oscar Eduardo Villarreal, Dipen Maheshbhai Maru, Cara L Haymaker, Jean-Nicholas Vauthey, George J Chang, Elena Bogatenkova, David G Menter, Edmund S Kopetz, John Paul Shen
Identification of Colorectal Cancer Cell Stemness from Single-Cell RNA Sequencing. Molecular cancer research : MCR 22 (4) (2024)
Kangyu Lin, Saikat Chowdhury, Mohammad A Zeineddine, Fadl A Zeineddine, Nicholas J Hornstein, Oscar Eduardo Villarreal, Dipen Maheshbhai Maru, Cara L Haymaker, Jean-Nicholas Vauthey, George J Chang, Elena Bogatenkova, David G Menter, Edmund S Kopetz, John Paul Shen
Identification of Colorectal Cancer Cell Stemness from Single-Cell RNA Sequencing. Molecular cancer research : MCR 22 (4) (2024)
Abdelrahman M G Yousef, Mahmoud M G Yousef, Saikat Chowdhury, Kawther Abdilleh, Mark Knafl, Paul Edelkamp, Kristin Alfaro-Munoz, Ray Chacko, Jennifer Peterson, Brandon G Smaglo, Robert A Wolff, Shubham Pant, Michael S Lee, Jason A Willis, Michael Overman, Sudheer Doss, Lynn M Matrisian, Mark W Hurd, Rebecca Snyder, Matthew H G Katz, Huamin Wang, Anirban Maitra, John Paul Shen, Dan Zhao
Impact of KRAS mutations and co-mutations on clinical outcomes in pancreatic ductal adenocarcinoma. NPJ precision oncology 8 (1) (2024)
Jeffrey A Klomp, Jennifer E Klomp, Clint A Stalnecker, Kirsten L Bryant, A Cole Edwards, Kristina Drizyte-Miller, Priya S Hibshman, J Nathaniel Diehl, Ye S Lee, Alexis J Morales, Khalilah E Taylor, Sen Peng, Nhan L Tran, Laura E Herring, Alex W Prevatte, Natalie K Barker, Laura D Hover, Jill Hallin, Saikat Chowdhury, Oluwadara Coker, Hey Min Lee, Craig M Goodwin, Prson Gautam, Peter Olson, James G Christensen, John Paul Shen, Edmund S Kopetz, Lee M Graves, Kian-Huat Lim, Andrea Wang-Gillam, Krister Wennerberg, Adrienne D Cox, Channing J Der
Defining the KRAS- and ERK-dependent transcriptome in KRAS-mutant cancers. Science (New York, N.Y.) 384 (6700) (2024)
Fadl A Zeineddine, Mohammad A Zeineddine, Abdelrahman M G Yousef, Yue Gu, Saikat Chowdhury, Arvind Dasari, Ryan W Huey, Benny Johnson, Bryan Kee, Michael S Lee, Maria Pia Morelli, Van K Morris, Michael J Overman, Christine Parseghian, Kanwal P S Raghav, Jason A Willis, Robert A Wolff, Yoshikuni Kawaguchi, Jean-Nicolas Vauthey, Ryan Sun, Scott Kopetz, John Paul Shen
Survival improvement for patients with metastatic colorectal cancer over twenty years. NPJ precision oncology 7 (1) (2023)
Saikat Chowdhury, Ria Gupta, Joshua Millstein, Kangyu Lin, Valsala Haridas, Mohammad A Zeineddine, Christine M Parseghian, Heinz-Josef Lenz, Edmund S Kopetz, John Paul Shen
Transcriptional Profiling and Consensus Molecular Subtype Assignment to Understand Response and Resistance to Anti-Epidermal Growth Factor Receptor Therapy in Colorectal Cancer. JCO precision oncology 7 (2023)
Ichiaki Ito, Abdelrahman M G Yousef, Saikat Chowdhury, Princess N Dickson, Zahra Alavi Naini, Michael G White, Karianne Giller Fleten, Norman John Carr, Keith F Fournier, Natalie Wall Fowlkes, John Paul Shen
Intraperitoneal paclitaxel is a safe and effective therapeutic strategy for treating mucinous appendiceal adenocarcinoma. Cancer research (2023)
Dan Zhao, Abdelrahman M G Yousef, Mahmoud Yousef, Saikat Chowdhury, Kawther Abdilleh, Mark Knafl, Paul Edelkamp, Kristin Alfaro-Munoz, Ray Chacko, Jennifer Peterson, Brandon G Smaglo, Robert A Wolff Wolff, Shubham Pant, Michael Lee, Jason A Willis, Michael Overman, Sudheer Doss, Lynn Matrisian, Mark Hurd, Rebecca Snyder, Matthew Katz, Huamin Wang, Anirban Maitra, John Paul Shen
Impact of KRAS Mutations and Co-mutations on Clinical Outcome in Pancreatic Ductal Adenocarcinoma. Research square (2023)
Wen-Hao Hsu, Kyle A LaBella, Yiyun Lin, Ping Xu, Rumi Lee, Rodney Cheng-En Hsieh, Lei Yang, Ashley Zhou, Jonathan M Blecher, Chang-Jiun Wu, Kangyu Lin, Xiaoying Shang, Shan Jiang, Denise J Spring, Yan Xia, Peiwen Chen, John Paul Shen, Edmund S Kopetz, Ronald A DePinho
Oncogenic KRAS drives lipo-fibrogenesis to promote angiogenesis and colon cancer progression. Cancer discovery (2023)
Fadl A Zeineddine, Mohammad A Zeineddine, Abdelrahman M G Yousef, Yue Gu, Saikat Chowdhury, Arvind Dasari, Ryan W Huey, Benny Johnson, Bryan Kee, Michael S Lee, Maria Pia Morelli, Van K Morris, Michael J Overman, Christine Parseghian, Kanwal P S Raghav, Jason A Willis, Robert A Wolff, Yoshikuni Kawaguchi, Jean-Nicolas Vauthey, Ryan Sun, Scott Kopetz, John Paul Shen
Survival improvement for patients with metastatic colorectal cancer over twenty years. NPJ precision oncology 7 (1) (2023)
Julia Dansby, Aditya More, Mohammad Zeineddine, Abdelrahman Yousef, Alisha Bent, Farshid Dayyani, Robert A Wolff, Michael James Overman, John Paul Shen
Taxane-Based Chemotherapy Is Effective in Metastatic Appendiceal Adenocarcinoma. The oncologist (2023)
Kangyu Lin, Saikat Chowdhury, Mohammad A Zeineddine, Fadl A Zeineddine, Nicholas J Hornstein, Oscar Eduardo Villarreal, Dipen Maheshbhai Maru, Cara L Haymaker, Jean-Nicholas Vauthey, George J Chang, Elena Bogatenkova, David G Menter, Edmund S Kopetz, John Paul Shen
Identification of colorectal cancer cell stemness from single-cell RNA sequencing. Molecular cancer research : MCR (2023)
Kristen Simmons, Jane V Thomas, Kaysia Ludford, Jason A Willis, Victoria Serpas Higbie, Kanwal P S Raghav, Benny Johnson, Arvind N Dasari, Bryan K Kee, Christine M Parseghian, Michael S Lee, Phat H Le, Maria P Morelli, John Paul Shen, Alisha Bent, Eduardo Vilar, Robert A Wolff, Edmund S Kopetz, Michael James Overman, Van Karlyle Morris
Sustained Disease Control in Immune Checkpoint Blockade Responders with Microsatellite Instability-high Colorectal Cancer after Treatment Termination. Cancer research communications 3 (12) (2023)
Julia Dansby, Aditya More, Mohammad Zeineddine, Abdelrahman Yousef, Alisha Bent, Farshid Dayyani, Robert Wolff, Michael Overman, John Paul Shen
Taxane-based Chemotherapy is Effective in Metastatic Appendiceal Adenocarcinoma. medRxiv : the preprint server for health sciences (2023)
Fadl A Zeineddine, Mohammad A Zeineddine, Abdelrahman M G Yousef, Yue Gu, Saikat Chowdhury, Arvind Dasari, Ryan W Huey, Benny Johnson, Bryan Kee, Michael S Lee, Maria Pia Morelli, Van K Morris, Michael J Overman, Christine Parseghian, Kanwal P S Raghav, Jason A Willis, Robert A Wolff, Yoshikuni Kawaguchi, Jean-Nicolas Vauthey, Ryan Sun, Scott Kopetz, John Paul Shen
Survival improvement for patients with metastatic colorectal cancer over twenty years. NPJ precision oncology 7 (1) (2023)
Kristen Simmons, Jane V Thomas, Kaysia Ludford, Jason A Willis, Victoria Serpas Higbie, Kanwal P S Raghav, Benny Johnson, Arvind N Dasari, Bryan K Kee, Christine M Parseghian, Michael S Lee, Phat H Le, Maria P Morelli, John Paul Shen, Alisha Bent, Eduardo Vilar, Robert A Wolff, Edmund S Kopetz, Michael James Overman, Van Karlyle Morris
Sustained Disease Control in Immune Checkpoint Blockade Responders with Microsatellite Instability-high Colorectal Cancer after Treatment Termination. Cancer research communications 3 (12) (2023)
Kristen Simmons, Jane V Thomas, Kaysia Ludford, Jason A Willis, Victoria Serpas Higbie, Kanwal P S Raghav, Benny Johnson, Arvind N Dasari, Bryan K Kee, Christine M Parseghian, Michael S Lee, Phat H Le, Maria P Morelli, John Paul Shen, Alisha Bent, Eduardo Vilar, Robert A Wolff, Edmund S Kopetz, Michael James Overman, Van Karlyle Morris
Sustained Disease Control in Immune Checkpoint Blockade Responders with Microsatellite Instability-high Colorectal Cancer after Treatment Termination. Cancer research communications 3 (12) (2023)
Kristen Simmons, Jane V Thomas, Kaysia Ludford, Jason A Willis, Victoria Serpas Higbie, Kanwal P S Raghav, Benny Johnson, Arvind N Dasari, Bryan K Kee, Christine M Parseghian, Michael S Lee, Phat H Le, Maria P Morelli, John Paul Shen, Alisha Bent, Eduardo Vilar, Robert A Wolff, Edmund S Kopetz, Michael James Overman, Van Karlyle Morris
Sustained Disease Control in Immune Checkpoint Blockade Responders with Microsatellite Instability-high Colorectal Cancer after Treatment Termination. Cancer research communications 3 (12) (2023)
Christine M Parseghian, Ryan Sun, Melanie Woods, Stefania Napolitano, Hey Min Lee, Jumanah Alshenaifi, Jason A Willis, Shakayla Nunez, Kanwal P S Raghav, Van Karlyle Morris, John Paul Shen, Madhulika Eluri, Alexey Sorokin, Preeti Kanikarla, Eduardo Vilar, Marko Rehn, Agnes Ang, Teresa Troiani, Edmund S Kopetz
Resistance Mechanisms to Anti-Epidermal Growth Factor Receptor Therapy in RAS/RAF Wild-Type Colorectal Cancer Vary by Regimen and Line of Therapy. Journal of clinical oncology : official journal of the American Society of Clinical Oncology (2022)
Benjamin Garmezy, Jinesh S Gheeya, Heather Y Lin, Yuefan Huang, Taebeom Kim, Xian-Li Jiang, Kyaw Zin Thein, Patrick G Pilié, Fadl Zeineddine, Wanlin Wang, Kenna Rael Shaw, Jordi Rodon Ahnert, John Paul Shen, Ying Yuan, Funda Meric-Bernstam, Ken Chen, Timothy A Yap
Clinical and Molecular Characterization of POLE Mutations as Predictive Biomarkers of Response to Immune Checkpoint Inhibitors in Advanced Cancers. JCO precision oncology 6 (2022)
Aditya More, Ichiaki Ito, Valsala Haridas, Saikat Chowdhury, Yue Gu, Princess Dickson, Natalie Fowlkes, John Paul Shen
Oncogene addiction to GNAS in GNAS R201 mutant tumors. Oncogene 41 (35) (2022)
Amir Mehrvarz Sarshekeh, Jumanah Alshenaifi, Jason Roszik, Ganiraju C Manyam, Shailesh M Advani, Riham Katkhuda, Anuj Verma, Michael Lam, Jason Willis, John Paul Shen, Jeffrey Morris, Jennifer S Davis, Jonathan M Loree, Hey Min Lee, Jaffer A Ajani, Dipen Maheshbhai Maru, Michael James Overman, Scott Kopetz
ARID1A Mutation May Define an Immunologically Active Subgroup in Patients with Microsatellite Stable Colorectal Cancer. Clinical cancer research : an official journal of the American Association for Cancer Research 27 (6) (2021)
John Paul Shen
Artificial intelligence, molecular subtyping, biomarkers, and precision oncology. Emerging topics in life sciences (2021)
John Paul Shen
Regarding Blood-Based Next-Generation Sequencing Analysis of Appendiceal Cancers. The oncologist 25 (12) (2020)
Ayesha Murtuza, Ajaz Bulbul, John Paul Shen, Parissa Keshavarzian, Brian D Woodward, Fernando J Lopez-Diaz, Scott M Lippman, Hatim Husain
Novel Third-Generation EGFR Tyrosine Kinase Inhibitors and Strategies to Overcome Therapeutic Resistance in Lung Cancer. Cancer research 79 (4) (2019)
Jenny Y Zhou, Jordan A Martinez, John Paul Shen
Lamotrigine-induced hemophagocytic lymphohistiocytosis with Takotsubo cardiomyopathy: a case report. Journal of medical case reports 13 (1) (2019)
Wei Zhang, Ana Bojorquez-Gomez, Daniel Ortiz Velez, Guorong Xu, Kyle S Sanchez, John Paul Shen, Kevin Chen, Katherine Licon, Collin Melton, Katrina M Olson, Michael Ku Yu, Justin K Huang, Hannah Carter, Emma K Farley, Michael Snyder, Stephanie I Fraley, Jason F Kreisberg, Trey Ideker
A global transcriptional network connecting noncoding mutations to changes in tumor gene expression. Nature genetics 50 (4) (2018)
John Paul Shen, Dongxin Zhao, Roman Sasik, Jens Luebeck, Amanda Birmingham, Ana Bojorquez-Gomez, Katherine Licon, Kristin Klepper, Daniel Pekin, Alex N Beckett, Kyle Salinas Sanchez, Alex Thomas, Chih-Chung Kuo, Dan Du, Assen Roguev, Nathan E Lewis, Aaron N Chang, Jason F Kreisberg, Nevan Krogan, Lei S Qi, Trey Ideker, Prashant Mali
Combinatorial CRISPR-Cas9 screens for de novo mapping of genetic interactions. Nature methods 14 (6) (2017)
Dan Du, Assen Roguev, David E Gordon, Meng Chen, Si-Han Chen, Michael Shales, John Paul Shen, Trey Ideker, Prashant Mali, Lei S Qi, Nevan J Krogan
Genetic interaction mapping in mammalian cells using CRISPR interference. Nature methods 14 (6) (2017)