Shai S Shen-Orr (Shai Shen-Orr)

Loop profile ORCID

Publication Activity (10 Years)

Years Active: 2018-2024
Publications (10 Years): 19

Top Topics

Machine Learning

Transcription Factor

Muscle Invasive Bladder Cancer

Mesenchymal Stem Cells

Top Venues

Nature communications

Molecular cancer therapeutics

This page only lists publications with an associated author ORCID identifier.

Publications

Tania Dubovik, Martin Lukačišin, Elina Starosvetsky, Benjamin LeRoy, Rachelly Normand, Yasmin Admon, Ayelet Alpert, Yishai Ofran, Max G'Sell, Shai S Shen-Orr
Interactions between immune cell types facilitate the evolution of immune traits. Nature 632 (8024) (2024)
Tania Dubovik, Martin Lukačišin, Elina Starosvetsky, Benjamin LeRoy, Rachelly Normand, Yasmin Admon, Ayelet Alpert, Yishai Ofran, Max G'Sell, Shai S Shen-Orr
Interactions between immune cell types facilitate the evolution of immune traits. Nature 632 (8024) (2024)
Tania Dubovik, Martin Lukačišin, Elina Starosvetsky, Benjamin LeRoy, Rachelly Normand, Yasmin Admon, Ayelet Alpert, Yishai Ofran, Max G'Sell, Shai S Shen-Orr
Interactions between immune cell types facilitate the evolution of immune traits. Nature 632 (8024) (2024)
Tania Dubovik, Martin Lukačišin, Elina Starosvetsky, Benjamin LeRoy, Rachelly Normand, Yasmin Admon, Ayelet Alpert, Yishai Ofran, Max G'Sell, Shai S Shen-Orr
Interactions between immune cell types facilitate the evolution of immune traits. Nature (2024)
Tania Dubovik, Martin Lukačišin, Elina Starosvetsky, Benjamin LeRoy, Rachelly Normand, Yasmin Admon, Ayelet Alpert, Yishai Ofran, Max G'Sell, Shai S Shen-Orr
Interactions between immune cell types facilitate the evolution of immune traits. Nature 632 (8024) (2024)
Tania Dubovik, Martin Lukačišin, Elina Starosvetsky, Benjamin LeRoy, Rachelly Normand, Yasmin Admon, Ayelet Alpert, Yishai Ofran, Max G'Sell, Shai S Shen-Orr
Interactions between immune cell types facilitate the evolution of immune traits. Nature (2024)
Emma L Short, Issssswan M Adcock, Bilal Al-Sarireh, Ann Ager, Ramzi A Ajjan, Naveed Akbar, Michael A Akeroyd, Ghada Alsaleh, Ghada Al-Sharbatee, Kambiz Alavian, Winfried M Amoaku, Julie K Andersen, Chrystalina A Antoniades, Mark J Arends, Susan M Astley, Denize Atan, Richard Attanoos, Johannes Attems, Stephen C Bain, Konstantinos Balaskas, Gabriel Balmus, Manohar L Bance, Thomas M Barber, Ajoy Bardhan, Karen L Barker, Peter John Barnes, Gemma Basatemur, Adrian C Bateman, Moisés Evandro Bauer, Christopher O C Bellamy, Edwin J R van Beek, Ilaria Bellantuono, Emyr Benbow, Sunil Bhandari, Rahul Bhatnagar, Philip Bloom, Dawn M E Bowdish, Melissa Bowerman, Melanie Rose Burke, Roxana O Carare, Emma Victoria Carrington, Jorge Iván Castillo-Quan, Peter D Clegg, James H Cole, Carlo Cota, Paul L Chazot, Christopher Chen, Ying C Cheong, Gary Christopher, George M Church, David Clancy, Paul Cool, Francesco Del Galdo, Mayank Dalakoti, Soumit Dasgupta, Colleen S Deane, Devesh Dhasmana, Stefan D Dojcinov, Monia Di Prete, Huaidong Du, Niharika A Duggal, Toby J Ellmers, Costanza Emanueli, Mark Emberton, Jorge D Erusalimsky, Laurence Feldmeyer, G Alexander Fleming, Karen Forbes, Thomas C Foster, Daniela Frasca, Ian M Frayling, Daniel Freedman, Tamas Fülöp, Georgina M Ellison-Hughes, Gus Gazzard, Christopher H George, Jesús Gil, Richard Glassock, Robert D Goldin, John Green, Robyn H Guymer, Hasan Nadim Haboubi, Lorna Harries, Simon Paul Hart, Douglas Hartley, Sebri Hasaballa, Christin Henein, Maggie Helliwell, Emily J Henderson, Rakesh Heer, Kristofer Holte, Iskander Idris, David Alan Isenberg, Juulia Jylhävä, Ahmed Iqbal, Simon W Jones, Rajesh Kalaria, Venkateswarlu Kanamarlapudi, Werner Kempf, Alexandra J Kermack, Jemma G Kerns, Albert Koulman, Adnan H Khan, James Macalister Kinross, Katarina Klaucane, Yamini Krishna, Harinderjit Singh Gill, Edward L M Lakatta, Ezio Laconi, Alpar S Lazar, Christiaan Leeuwenburgh, Samantha Leung, Xuan Li, Ian van der Linde, Luisa V Lopes, Antonello Lorenzini, Andrew John Lotery, Pedro M Machado, Sarah Louise Mackie, Paolo Madeddu, Andrea Britta Maier, Krishna Mukkanna, Pinelopi Manousou, Oonagh Markey, Claudio Mauro, Barry J McDonnell, Reinhold J Medina, Soma Meran, Claudia Metzler-Baddeley, Ignor Meglinksi, Neta Milman, Christina Mitteldorf, Ruth Rebecca Montgomery, Andrew Conway Morris, Beda Mühleisen, Abhik Mukherkee, Andrew J Murray, Scott McGill Nelson, Anna Nicolaou, Alexander Nirenberg, Simon Noble, Lisa S Nolan, Meritxell Nus, Canh Van On, Victor Osei-Lah, Mandy J Peffers, Antony J R Palmer, Donald Palmer, Laura Palmer, William Parry-Smith, Graham P Pawelec, Shahaf Peleg, Ranmith Perera, Andrew A Pitsillides, Christopher J Plack, Franze Progatzsky, Sonja Pyott, Kaukab Rajput, Sameera Rashid, J Arjuna Ratnayaka, Sudhira A B Ratnayake, Manuel Rodriguez, Arianna Carolina Rosa, Andrew D Rule, Gareth John Sanger, Ian Sayers, Andrew J Saykin, Dinesh Selvarajah, Jaswinder K Sethi, Cathy Shanahan, Shai S Shen-Orr, Carl M Sheridan, Paul G Shiels, Kastytis Sidlauskas, Sobha Sivaprasad, Judith Sluimer, Gary Small, Peter Smith, Rebecca M Smith, Sarah J B Snelling, Ioakim Spyridopoulos, Ramasamy Srinivasa Raghavan, David H W Steel, Karen P Steel, Claire E Stewart, Keeron Stone, Selvarani Subbarayan, Mark A Sussman, Jonas Svensson, Vyshnavi Tadanki, Ai Lyn Tan, Rudolph E Tanzi, Amanda L Tatler, Adriana A S Tavares, Tengku Amatullah Madeehah Tengku Mohd, Ana Tiganescu, James Timmons, Jeremy J Tree, Drupad K Trivedi, Emmanuel A Tsochatzis, Dialechti Tsimpida, Elisabeth J Vinke, Anna C Phillips, Neeru Amrita Vallabh, Kristin V Veighey, Zoe Claire Venables, Venkat Reddy, Meike W Vernooij, Chris P Verschoor, Manlio Vinciguerra, Vesna Vukanovic, Vladyslav V Vyazovskiy, James J Walker, Richard J Wakefield, Adam John Watkins, Anthony J Webster, Caroline M Weight, Birgit Weinberger, Susan L Whitney, Rosalind Willis, Jacek M Witkowski, Leonard Leong-Litt Yeo, Tham Yhi Chung, Emma Yu, Michael B Zemel, Stuart R G Calimport, Barry L Bentley
Defining an Ageing-Related Pathology, Disease or Syndrome: International Consensus Statement. medRxiv : the preprint server for health sciences (2024)
Amit Frishberg, Neta Milman, Ayelet Alpert, Hannah Spitzer, Ben Asani, Johannes B Schiefelbein, Evgeny Bakin, Karen Regev-Berman, Siegfried G Priglinger, Joachim L Schultze, Fabian Joachim Theis, Shai S Shen-Orr
Reconstructing disease dynamics for mechanistic insights and clinical benefit. Nature communications 14 (1) (2023)
Nazish Sayed, Yingxiang Huang, Khiem Nguyen, Zuzana Krejciova-Rajaniemi, Anissa P Grawe, Tianxiang Gao, Robert Tibshirani, Trevor J Hastie, Ayelet Alpert, Lu Cui, Tatiana Kuznetsova, Yael Rosenberg-Hasson, Rita Ostan, Daniela Monti, Daniela Berdnik, Shai S Shen-Orr, Holden T Maecker, Cornelia L Dekker, Tony Wyss-Coray, Claudio Franceschi, Vladimir Jojic, François Haddad, José G Montoya, Joseph C Wu, Mark M Davis, David Furman
An inflammatory aging clock (iAge) based on deep learning tracks multimorbidity, immunosenescence, frailty and cardiovascular aging. Nature aging 1 (2021)
Raanan Greenman, Yoav Pizem, Maya Haus-Cohen, Alona Goor, Guy Horev, Galit Denkberg, Keren Sinik, Yael Elbaz, Vered Bronner, Anat Globerson Levin, Galit Horn, Shai S Shen-Orr, Yoram Reiter
Shaping Functional Avidity of CAR T Cells: Affinity, Avidity, and Antigen Density That Regulate Response. Molecular cancer therapeutics 20 (5) (2021)
Raanan Greenman, Yoav Pizem, Maya Haus-Cohen, Guy Horev, Galit Denkberg, Shai S Shen-Orr, Jacob Rubinstein, Yoram Reiter
Phenotypic Models of CAR T-Cell Activation Elucidate the Pivotal Regulatory Role of CAR Downmodulation. Molecular cancer therapeutics 20 (5) (2021)
Ayelet Alpert, Yishai Pickman, Michael D Leipold, Yael Rosenberg-Hasson, Xuhuai Ji, Renaud Gaujoux, Hadas Rabani, Elina Starosvetsky, Ksenya Kveler, Steven Schaffert, David Furman, Oren Caspi, Uri Rosenschein, Purvesh Khatri, Cornelia L Dekker, Holden T Maecker, Mark M Davis, Shai S Shen-Orr
A clinically meaningful metric of immune age derived from high-dimensional longitudinal monitoring. Nature medicine 25 (3) (2019)
Shilo Ohayon, Arik Girsault, Maisa Nasser, Shai S Shen-Orr, Amit Meller
Simulation of single-protein nanopore sensing shows feasibility for whole-proteome identification. PLoS computational biology 15 (5) (2019)
Yael Haberman, Rebekah Karns, Phillip J Dexheimer, Melanie Schirmer, Judith Somekh, Ingrid Jurickova, Tzipi Braun, Elizabeth Novak, Laura Bauman, Margaret H Collins, Angela Mo, Michael J Rosen, Erin Bonkowski, Nathan Gotman, Alison Marquis, Mason Nistel, Paul A Rufo, Susan S Baker, Cary G Sauer, James Markowitz, Marian D Pfefferkorn, Joel R Rosh, Brendan M Boyle, David R Mack, Robert N Baldassano, Sapana Shah, Neal S Leleiko, Melvin B Heyman, Anne M Grifiths, Ashish S Patel, Joshua D Noe, Bruce J Aronow, Subra Kugathasan, Thomas D Walters, Greg Gibson, Sonia Davis Thomas, Kevin Mollen, Shai S Shen-Orr, Curtis Huttenhower, Ramnik J Xavier, Jeffrey S Hyams, Lee A Denson
Ulcerative colitis mucosal transcriptomes reveal mitochondriopathy and personalized mechanisms underlying disease severity and treatment response. Nature communications 10 (1) (2019)
Caspar Mewes, Benedikt Büttner, José Hinz, Ayelet Alpert, Aron-Frederik Popov, Michael Ghadimi, Tim Beissbarth, Mladen Tzvetkov, Ole Jensen, Julius Runzheimer, Michael Quintel, Shai S Shen-Orr, Ingo Bergmann, Ashham Mansur
CTLA-4 Genetic Variants Predict Survival in Patients with Sepsis. Journal of clinical medicine 8 (1) (2019)
Rachelly Normand, Wenfei Du, Mayan Briller, Renaud Gaujoux, Elina Starosvetsky, Amit Ziv-Kenet, Gali Shalev-Malul, Robert J Tibshirani, Shai S Shen-Orr
Found In Translation: a machine learning model for mouse-to-human inference. Nature methods 15 (12) (2018)
Ayelet Alpert, Lindsay S Moore, Tania Dubovik, Shai S Shen-Orr
Alignment of single-cell trajectories to compare cellular expression dynamics. Nature methods 15 (4) (2018)
Caspar Mewes, Benedikt Büttner, José Hinz, Ayelet Alpert, Aron Frederik Popov, Michael Ghadimi, Tim Beissbarth, Mladen Tzvetkov, Shai S Shen-Orr, Ingo Bergmann, Ashham Mansur
The CTLA-4 rs231775 GG genotype is associated with favorable 90-day survival in Caucasian patients with sepsis. Scientific reports 8 (1) (2018)
Ksenya Kveler, Elina Starosvetsky, Amit Ziv-Kenet, Yuval Kalugny, Yuri Gorelik, Gali Shalev-Malul, Netta Aizenbud-Reshef, Tania Dubovik, Mayan Briller, John Campbell, Jan C Rieckmann, Nuaman Asbeh, Doron Rimar, Rüdiger Klein, Jeff Wiser, Shai S Shen-Orr
Immune-centric network of cytokines and cells in disease context identified by computational mining of PubMed. Nature biotechnology 36 (7) (2018)