Lee A Denson (Lee Denson)

Publication Activity (10 Years)

Years Active: 2019-2024
Publications (10 Years): 30

Top Topics

Ulcerative Colitis

Top Venues

Nature communications

Inflammatory bowel diseases

Journal of Crohn's & colitis

Alimentary pharmacology & therapeutics

This page only lists publications with an associated author ORCID identifier.

Publications

Tzipi Braun, Rui Feng, Amnon Amir, Nina Levhar, Hila Shacham, Ren Mao, Rotem Hadar, Itamar Toren, Yadid M Algavi, Kathleen Abu-Saad, Shuoyu Zhuo, Gilat Efroni, Alona Malik, Orit Picard, Miri Yavzori, Bella Agranovich, Ta-Chiang Liu, Thaddeus S Stappenbeck, Lee A Denson, Ofra Kalter-Leibovici, Eyal Gottlieb, Elhanan Borenstein, Eran Elinav, Minhu Chen, Shomron Ben-Horin, Yael Haberman
Diet-omics in the Study of Urban and Rural Crohn disease Evolution (SOURCE) cohort. Nature communications 15 (1) (2024)
Kristi Briggs, Vartika Tomar, Nicholas Ollberding, Yael Haberman, Arno R Bourgonje, Shixian Hu, Lara Chaaban, Laxmi Sunuwar, Rinse K Weersma, Lee A Denson, Joanna M P Melia
Crohn's Disease-Associated Pathogenic Mutation in the Manganese Transporter ZIP8 Shifts the Ileal and Rectal Mucosal Microbiota Implicating Aberrant Bile Acid Metabolism. Inflammatory bowel diseases (2024)
Tzipi Braun, Rui Feng, Amnon Amir, Nina Levhar, Hila Shacham, Ren Mao, Rotem Hadar, Itamar Toren, Yadid M Algavi, Kathleen Abu-Saad, Shuoyu Zhuo, Gilat Efroni, Alona Malik, Orit Picard, Miri Yavzori, Bella Agranovich, Ta-Chiang Liu, Thaddeus S Stappenbeck, Lee A Denson, Ofra Kalter-Leibovici, Eyal Gottlieb, Elhanan Borenstein, Eran Elinav, Minhu Chen, Shomron Ben-Horin, Yael Haberman
Diet-omics in the Study of Urban and Rural Crohn disease Evolution (SOURCE) cohort. Nature communications 15 (1) (2024)
Ingrid Jurickova, Benjamin W Dreskin, Elizabeth Angerman, Erin Bonkowski, Jack Nguyen, Richard Villarreal, Kentaro Tominaga, Kentaro Iwasawa, Tzipi Braun, Takanori Takebe, Michael A Helmrath, Yael Haberman, James M Wells, Lee A Denson
Eicosatetraynoic Acid Regulates Pro-Fibrotic Pathways in an Induced Pluripotent Stem Cell Derived Macrophage:Human Intestinal Organoid Model of Crohn's Disease. Journal of Crohn's & colitis (2024)
Kristi Briggs, Vartika Tomar, Nicholas Ollberding, Yael Haberman, Arno R Bourgonje, Shixian Hu, Lara Chaaban, Laxmi Sunuwar, Rinse K Weersma, Lee A Denson, Joanna M P Melia
Crohn's Disease-Associated Pathogenic Mutation in the Manganese Transporter ZIP8 Shifts the Ileal and Rectal Mucosal Microbiota Implicating Aberrant Bile Acid Metabolism. Inflammatory bowel diseases 30 (8) (2024)
Tzipi Braun, Rui Feng, Amnon Amir, Nina Levhar, Hila Shacham, Ren Mao, Rotem Hadar, Itamar Toren, Yadid M Algavi, Kathleen Abu-Saad, Shuoyu Zhuo, Gilat Efroni, Alona Malik, Orit Picard, Miri Yavzori, Bella Agranovich, Ta-Chiang Liu, Thaddeus S Stappenbeck, Lee A Denson, Ofra Kalter-Leibovici, Eyal Gottlieb, Elhanan Borenstein, Eran Elinav, Minhu Chen, Shomron Ben-Horin, Yael Haberman
Diet-omics in the Study of Urban and Rural Crohn disease Evolution (SOURCE) cohort. Nature communications 15 (1) (2024)
Jonathan R Dillman, Jean A Tkach, Joel G Fletcher, David H Bruining, Aiming Lu, Subra Kugathasan, Adina L Alazraki, Jack Knight-Scott, Ryan W Stidham, Jeremy Adler, Bruce C Trapnell, Scott D Swanson, Lin Fei, Lucia Qian, Alexander J Towbin, Murat Kocaoglu, Christopher G Anton, Rebecca A Imbus, Jonathan A Dudley, Lee A Denson
MRI and Blood-based Biomarkers Are Associated With Surgery in Children and Adults With Ileal Crohn's Disease. Inflammatory bowel diseases (2024)
Kristi Briggs, Vartika Tomar, Nicholas Ollberding, Yael Haberman, Arno R Bourgonje, Shixian Hu, Lara Chaaban, Laxmi Sunuwar, Rinse K Weersma, Lee A Denson, Joanna M P Melia
Crohn's Disease-Associated Pathogenic Mutation in the Manganese Transporter ZIP8 Shifts the Ileal and Rectal Mucosal Microbiota Implicating Aberrant Bile Acid Metabolism. Inflammatory bowel diseases 30 (8) (2024)
Kristi Briggs, Vartika Tomar, Nicholas Ollberding, Yael Haberman, Arno R Bourgonje, Shixian Hu, Lara Chaaban, Laxmi Sunuwar, Rinse K Weersma, Lee A Denson, Joanna M P Melia
Crohn's Disease-Associated Pathogenic Mutation in the Manganese Transporter ZIP8 Shifts the Ileal and Rectal Mucosal Microbiota Implicating Aberrant Bile Acid Metabolism. Inflammatory bowel diseases 30 (8) (2024)
Ingrid Jurickova, Benjamin W Dreskin, Elizabeth Angerman, Erin Bonkowski, Jack Nguyen, Richard Villarreal, Kentaro Tominaga, Kentaro Iwasawa, Tzipi Braun, Takanori Takebe, Michael A Helmrath, Yael Haberman, James M Wells, Lee A Denson
Eicosatetraynoic Acid Regulates Pro-Fibrotic Pathways in an Induced Pluripotent Stem Cell Derived Macrophage:Human Intestinal Organoid Model of Crohn's Disease. Journal of Crohn's & colitis (2024)
Yiming Wu, Kyle Gettler, Meltem Ece Kars, Mamta Giri, Dalin Li, Cigdem Sevim Bayrak, Peng Zhang, Aayushee Jain, Patrick Maffucci, Ksenija Sabic, Tielman T Van Vleck, Girish Nitin Nadkarni, Lee A Denson, Harry Ostrer, Adam P Levine, Elena R Schiff, Anthony Walter Segal, Subra Kugathasan, Peter D Stenson, David N Cooper, L Philip Schumm, Scott B Snapper, Mark J Daly, Talin Haritunians, Richard H Duerr, Mark S Silverberg, John D Rioux, Steven R Brant, Dermot P B McGovern, Judy H Cho, Yuval Itan
Identifying high-impact variants and genes in exomes of Ashkenazi Jewish inflammatory bowel disease patients. Nature communications 14 (1) (2023)
Yiming Wu, Kyle Gettler, Meltem Ece Kars, Mamta Giri, Dalin Li, Cigdem Sevim Bayrak, Peng Zhang, Aayushee Jain, Patrick Maffucci, Ksenija Sabic, Tielman T Van Vleck, Girish Nitin Nadkarni, Lee A Denson, Harry Ostrer, Adam P Levine, Elena R Schiff, Anthony Walter Segal, Subra Kugathasan, Peter D Stenson, David N Cooper, L Philip Schumm, Scott B Snapper, Mark J Daly, Talin Haritunians, Richard H Duerr, Mark S Silverberg, John D Rioux, Steven R Brant, Dermot P B McGovern, Judy H Cho, Yuval Itan
Identifying high-impact variants and genes in exomes of Ashkenazi Jewish inflammatory bowel disease patients. Nature communications 14 (1) (2023)
Yiming Wu, Kyle Gettler, Meltem Ece Kars, Mamta Giri, Dalin Li, Cigdem Sevim Bayrak, Peng Zhang, Aayushee Jain, Patrick Maffucci, Ksenija Sabic, Tielman T Van Vleck, Girish Nitin Nadkarni, Lee A Denson, Harry Ostrer, Adam P Levine, Elena R Schiff, Anthony Walter Segal, Subra Kugathasan, Peter D Stenson, David N Cooper, L Philip Schumm, Scott B Snapper, Mark J Daly, Talin Haritunians, Richard H Duerr, Mark S Silverberg, John D Rioux, Steven R Brant, Dermot P B McGovern, Judy H Cho, Yuval Itan
Identifying high-impact variants and genes in exomes of Ashkenazi Jewish inflammatory bowel disease patients. Nature communications 14 (1) (2023)
Yiming Wu, Kyle Gettler, Meltem Ece Kars, Mamta Giri, Dalin Li, Cigdem Sevim Bayrak, Peng Zhang, Aayushee Jain, Patrick Maffucci, Ksenija Sabic, Tielman T Van Vleck, Girish Nitin Nadkarni, Lee A Denson, Harry Ostrer, Adam P Levine, Elena R Schiff, Anthony Walter Segal, Subra Kugathasan, Peter D Stenson, David N Cooper, L Philip Schumm, Scott B Snapper, Mark J Daly, Talin Haritunians, Richard H Duerr, Mark S Silverberg, John D Rioux, Steven R Brant, Dermot P B McGovern, Judy H Cho, Yuval Itan
Identifying high-impact variants and genes in exomes of Ashkenazi Jewish inflammatory bowel disease patients. Nature communications 14 (1) (2023)
Yiming Wu, Kyle Gettler, Meltem Ece Kars, Mamta Giri, Dalin Li, Cigdem Sevim Bayrak, Peng Zhang, Aayushee Jain, Patrick Maffucci, Ksenija Sabic, Tielman T Van Vleck, Girish Nitin Nadkarni, Lee A Denson, Harry Ostrer, Adam P Levine, Elena R Schiff, Anthony Walter Segal, Subra Kugathasan, Peter D Stenson, David N Cooper, L Philip Schumm, Scott B Snapper, Mark J Daly, Talin Haritunians, Richard H Duerr, Mark S Silverberg, John D Rioux, Steven R Brant, Dermot P B McGovern, Judy H Cho, Yuval Itan
Identifying high-impact variants and genes in exomes of Ashkenazi Jewish inflammatory bowel disease patients. Nature communications 14 (1) (2023)
Yiming Wu, Kyle Gettler, Meltem Ece Kars, Mamta Giri, Dalin Li, Cigdem Sevim Bayrak, Peng Zhang, Aayushee Jain, Patrick Maffucci, Ksenija Sabic, Tielman T Van Vleck, Girish Nitin Nadkarni, Lee A Denson, Harry Ostrer, Adam P Levine, Elena R Schiff, Anthony Walter Segal, Subra Kugathasan, Peter D Stenson, David N Cooper, L Philip Schumm, Scott B Snapper, Mark J Daly, Talin Haritunians, Richard H Duerr, Mark S Silverberg, John D Rioux, Steven R Brant, Dermot P B McGovern, Judy H Cho, Yuval Itan
Identifying high-impact variants and genes in exomes of Ashkenazi Jewish inflammatory bowel disease patients. Nature communications 14 (1) (2023)
Yiming Wu, Kyle Gettler, Meltem Ece Kars, Mamta Giri, Dalin Li, Cigdem Sevim Bayrak, Peng Zhang, Aayushee Jain, Patrick Maffucci, Ksenija Sabic, Tielman T Van Vleck, Girish Nitin Nadkarni, Lee A Denson, Harry Ostrer, Adam P Levine, Elena R Schiff, Anthony Walter Segal, Subra Kugathasan, Peter D Stenson, David N Cooper, L Philip Schumm, Scott B Snapper, Mark J Daly, Talin Haritunians, Richard H Duerr, Mark S Silverberg, John D Rioux, Steven R Brant, Dermot P B McGovern, Judy H Cho, Yuval Itan
Identifying high-impact variants and genes in exomes of Ashkenazi Jewish inflammatory bowel disease patients. Nature communications 14 (1) (2023)
Yiming Wu, Kyle Gettler, Meltem Ece Kars, Mamta Giri, Dalin Li, Cigdem Sevim Bayrak, Peng Zhang, Aayushee Jain, Patrick Maffucci, Ksenija Sabic, Tielman T Van Vleck, Girish Nitin Nadkarni, Lee A Denson, Harry Ostrer, Adam P Levine, Elena R Schiff, Anthony Walter Segal, Subra Kugathasan, Peter D Stenson, David N Cooper, L Philip Schumm, Scott B Snapper, Mark J Daly, Talin Haritunians, Richard H Duerr, Mark S Silverberg, John D Rioux, Steven R Brant, Dermot P B McGovern, Judy H Cho, Yuval Itan
Identifying high-impact variants and genes in exomes of Ashkenazi Jewish inflammatory bowel disease patients. Nature communications 14 (1) (2023)
Yiming Wu, Kyle Gettler, Meltem Ece Kars, Mamta Giri, Dalin Li, Cigdem Sevim Bayrak, Peng Zhang, Aayushee Jain, Patrick Maffucci, Ksenija Sabic, Tielman T Van Vleck, Girish Nitin Nadkarni, Lee A Denson, Harry Ostrer, Adam P Levine, Elena R Schiff, Anthony Walter Segal, Subra Kugathasan, Peter D Stenson, David N Cooper, L Philip Schumm, Scott B Snapper, Mark J Daly, Talin Haritunians, Richard H Duerr, Mark S Silverberg, John D Rioux, Steven R Brant, Dermot P B McGovern, Judy H Cho, Yuval Itan
Identifying high-impact variants and genes in exomes of Ashkenazi Jewish inflammatory bowel disease patients. Nature communications 14 (1) (2023)
Katya E Sosnovski, Tzipi Braun, Amnon Amir, Danielle Moshel, Marina BenShoshan, Kelli L VanDussen, Nina Levhar, Haya Abbas-Egbariya, Katia Beider, Rakefet Ben-Yishay, Syed Asad Ali, Sean R Moore, Subra Kugathasan, Ifat Abramovich, Efrat Glick Saar, Batya Weiss, Iris Barshack, Eyal Gottlieb, Tamar Geiger, Shomron Ben-Horin, Igor Ulitsky, Jeffrey S Hyams, Lee A Denson, Yael Haberman
GATA6-AS1 regulates intestinal epithelial mitochondrial functions, and its reduced expression is linked to intestinal inflammation and less favorable disease course in ulcerative colitis (UC). Journal of Crohn's & colitis (2023)
Kathryn Clarkston, Rebekah Karns, Anil G Jegga, Mihika Sharma, Sejal Fox, Babajide A Ojo, Phillip Minar, Thomas D Walters, Anne M Griffiths, David R Mack, Brendan Boyle, Neal S LeLeiko, James Markowitz, Joel R Rosh, Ashish S Patel, Sapana Shah, Robert N Baldassano, Marian Pfefferkorn, Cary Sauer, Subra Kugathasan, Yael Haberman, Jeffrey S Hyams, Lee A Denson, Michael J Rosen
Targeted Assessment of Mucosal Immune Gene Expression Predicts Clinical Outcomes in Children with Ulcerative Colitis. Journal of Crohn's & colitis 16 (11) (2022)
Ruben J Colman, Tomoyuki Mizuno, Keizo Fukushima, David B Haslam, Jeffrey S Hyams, Brendan Boyle, Joshua D Noe, Geert R A M D'Haens, Johan E Van Limbergen, Kelly Chun, Jane Yang, Lee A Denson, Nicholas J Ollberding, Alexander A Vinks, Phillip Paul Minar
Real world population pharmacokinetic study in children and young adults with inflammatory bowel disease discovers novel blood and stool microbial predictors of vedolizumab clearance. Alimentary pharmacology & therapeutics (2022)
Xueheng Zhao, Kenneth D R Setchell, Rong Huang, Indika Mallawaarachchi, Lubaina Ehsan, Edward Dobrzykowski Iii, Junfang Zhao, Sana Syed, Jennie Z Ma, Najeeha T Iqbal, Junaid Iqbal, Kamran Sadiq, Sheraz Ahmed, Yael Haberman, Lee A Denson, Syed Asad Ali, Sean R Moore
Bile Acid Profiling Reveals Distinct Signatures in Undernourished Children with Environmental Enteric Dysfunction. The Journal of nutrition 151 (12) (2022)
Amir Bein, Cicely W Fadel, Ben Swenor, Wuji Cao, Rani K Powers, Diogo M Camacho, Arash Naziripour, Andrew Parsons, Nina LoGrande, Sanjay S Timilsina, Seongmin Kim, Hossein Baharvand, Jennifer Grant, David T Breault, Junaid Iqbal, Syed Asad Ali, Lee A Denson, Sean R Moore, Rachelle Prantil-Baun, Girija Goyal, Donald E Ingber
Nutritional deficiency in an intestine-on-a-chip recapitulates injury hallmarks associated with environmental enteric dysfunction. Nature biomedical engineering 6 (11) (2022)
Ingrid Jurickova, Erin Bonkowski, Elizabeth Angerman, Elizabeth Novak, Alex Huron, Grayce Akers, Kentaro Iwasawa, Tzipi Braun, Rotem Hadar, Maria Hooker, Sarah Han, David J Cutler, David T Okou, Subra Kugathasan, Anil Jegga, James Wells, Takanori Takebe, Kevin P Mollen, Yael Haberman, Lee A Denson
Eicosatetraynoic Acid and Butyrate Regulate Human Intestinal Organoid Mitochondrial and Extracellular Matrix Pathways Implicated in Crohn's Disease Strictures. Inflammatory bowel diseases 28 (7) (2022)
Ruben J Colman, Ye Xiong, Tomoyuki Mizuno, Jeffrey S Hyams, Joshua D Noe, Brendan Boyle, Geert R D'Haens, Johan E Van Limbergen, Kelly Chun, Jane Yang, Michael J Rosen, Lee A Denson, Alexander A Vinks, Phillip Paul Minar
Antibodies-to-infliximab accelerate clearance while dose intensification reverses immunogenicity and recaptures clinical response in paediatric Crohn's disease. Alimentary pharmacology & therapeutics 55 (5) (2021)
Sanam Soomro, Suresh Venkateswaran, Kamala Vanarsa, Marwa Kharboutli, Malavika Nidhi, Ramya Susarla, Ting Zhang, Prashanth Sasidharan, Kyung Hyun Lee, Joel Rosh, James Markowitz, Claudia Pedroza, Lee A Denson, Jeffrey Hyams, Subra Kugathasan, Chandra Mohan
Predicting disease course in ulcerative colitis using stool proteins identified through an aptamer-based screen. Nature communications 12 (1) (2021)
Allison D Ta, Nicholas J Ollberding, Rebekah Karns, Yael Haberman, Adina L Alazraki, David Hercules, Robert Baldassano, James Markowitz, Melvin B Heyman, Sandra Kim, Barbara Kirschner, Jason M Shapiro, Joshua Noe, Maria Oliva-Hemker, Anthony Otley, Marian Pfefferkorn, Richard Kellermayer, Scott Snapper, Shervin Rabizadeh, Ramnik Xavier, Marla Dubinsky, Jeffrey Hyams, Subra Kugathasan, Anil G Jegga, Jonathan R Dillman, Lee A Denson
Association of Baseline Luminal Narrowing With Ileal Microbial Shifts and Gene Expression Programs and Subsequent Transmural Healing in Pediatric Crohn Disease. Inflammatory bowel diseases 27 (11) (2021)
Shu-En Wu, Seika Hashimoto-Hill, Vivienne Woo, Emily M Eshleman, Jordan Whitt, Laura Engleman, Rebekah Karns, Lee A Denson, David B Haslam, Theresa Alenghat
Microbiota-derived metabolite promotes HDAC3 activity in the gut. Nature 586 (7827) (2020)
Yael Haberman, Rebekah Karns, Phillip J Dexheimer, Melanie Schirmer, Judith Somekh, Ingrid Jurickova, Tzipi Braun, Elizabeth Novak, Laura Bauman, Margaret H Collins, Angela Mo, Michael J Rosen, Erin Bonkowski, Nathan Gotman, Alison Marquis, Mason Nistel, Paul A Rufo, Susan S Baker, Cary G Sauer, James Markowitz, Marian D Pfefferkorn, Joel R Rosh, Brendan M Boyle, David R Mack, Robert N Baldassano, Sapana Shah, Neal S Leleiko, Melvin B Heyman, Anne M Grifiths, Ashish S Patel, Joshua D Noe, Bruce J Aronow, Subra Kugathasan, Thomas D Walters, Greg Gibson, Sonia Davis Thomas, Kevin Mollen, Shai S Shen-Orr, Curtis Huttenhower, Ramnik J Xavier, Jeffrey S Hyams, Lee A Denson
Ulcerative colitis mucosal transcriptomes reveal mitochondriopathy and personalized mechanisms underlying disease severity and treatment response. Nature communications 10 (1) (2019)