Ramnik J Xavier (Ramnik Xavier)

ORCID

Publication Activity (10 Years)

Years Active: 2017-2024
Publications (10 Years): 106

Top Venues

Nature communications

Nature

Nature reviews. Rheumatology

The Journal of experimental medicine

This page only lists publications with an associated author ORCID identifier.

Publications

Daria V Zhernakova, Dao-Ming Wang, Lei Liu, Sergio Andreu-Sánchez, Yue Zhang, Angel Jonathan Ruiz-Moreno, Haoran Peng, Niels Plomp, Ángela Del Castillo-Izquierdo, Ranko Gacesa, Esteban A Lopera-Maya, Godfrey S Temba, Vesla I Kullaya, Sander S van Leeuwen, null null, Ramnik J Xavier, Quirijn de Mast, Leo A B Joosten, Niels P Riksen, Joost H W Rutten, Mihai M Netea, Serena Sanna, Cisca Wijmenga, Rinse K Weersma, Alexandra Zhernakova, Hermie J M Harmsen, Jingyuan Fu
Host genetic regulation of human gut microbial structural variation. Nature (2024)
Daria V Zhernakova, Dao-Ming Wang, Lei Liu, Sergio Andreu-Sánchez, Yue Zhang, Angel Jonathan Ruiz-Moreno, Haoran Peng, Niels Plomp, Ángela Del Castillo-Izquierdo, Ranko Gacesa, Esteban A Lopera-Maya, Godfrey S Temba, Vesla I Kullaya, Sander S van Leeuwen, null null, Ramnik J Xavier, Quirijn de Mast, Leo A B Joosten, Niels P Riksen, Joost H W Rutten, Mihai M Netea, Serena Sanna, Cisca Wijmenga, Rinse K Weersma, Alexandra Zhernakova, Hermie J M Harmsen, Jingyuan Fu
Host genetic regulation of human gut microbial structural variation. Nature 625 (7996) (2024)
Daria V Zhernakova, Dao-Ming Wang, Lei Liu, Sergio Andreu-Sánchez, Yue Zhang, Angel Jonathan Ruiz-Moreno, Haoran Peng, Niels Plomp, Ángela Del Castillo-Izquierdo, Ranko Gacesa, Esteban A Lopera-Maya, Godfrey S Temba, Vesla I Kullaya, Sander S van Leeuwen, null null, Ramnik J Xavier, Quirijn de Mast, Leo A B Joosten, Niels P Riksen, Joost H W Rutten, Mihai M Netea, Serena Sanna, Cisca Wijmenga, Rinse K Weersma, Alexandra Zhernakova, Hermie J M Harmsen, Jingyuan Fu
Host genetic regulation of human gut microbial structural variation. Nature 625 (7996) (2024)
Jiarui Ding, John J Garber, Amiko Uchida, Ariel Lefkovith, Grace T Carter, Praveen Vimalathas, Lauren Canha, Michael Dougan, Kyle Staller, Joseph Yarze, Toni Marie Delorey, Orit Rozenblatt-Rosen, Orr Ashenberg, Daniel B Graham, Jacques Deguine, Aviv Regev, Ramnik J Xavier
An esophagus cell atlas reveals dynamic rewiring during active eosinophilic esophagitis and remission. Nature communications 15 (1) (2024)
Jiarui Ding, John J Garber, Amiko Uchida, Ariel Lefkovith, Grace T Carter, Praveen Vimalathas, Lauren Canha, Michael Dougan, Kyle Staller, Joseph Yarze, Toni Marie Delorey, Orit Rozenblatt-Rosen, Orr Ashenberg, Daniel B Graham, Jacques Deguine, Aviv Regev, Ramnik J Xavier
An esophagus cell atlas reveals dynamic rewiring during active eosinophilic esophagitis and remission. Nature communications 15 (1) (2024)
Munehiro Furuichi, Takaaki Kawaguchi, Marie-Madlen Pust, Keiko Yasuma-Mitobe, Damian Rafal Plichta, Naomi Hasegawa, Takashi Ohya, Shakti K Bhattarai, Satoshi Sasajima, Yoshimasa Aoto, Timur Tuganbaev, Mizuki Yaginuma, Masahiro Ueda, Nobuyuki Okahashi, Kimiko Amafuji, Yuko Kiridoshi, Kayoko Sugita, Martin Stražar, Julian Avila Pacheco, Kerry Pierce, Andrew T Chan, Ashwin N Skelly, Masahira Hattori, Nobuhiro Nakamoto, Silvia Caballero, Jason M Norman, Bernat Olle, Takeshi Tanoue, Wataru Suda, Makoto Arita, Vanni Bucci, Koji Atarashi, Ramnik J Xavier, Kenya Honda
Commensal consortia decolonize Enterobacteriaceae via ecological control. Nature (2024)
Daria V Zhernakova, Dao-Ming Wang, Lei Liu, Sergio Andreu-Sánchez, Yue Zhang, Angel Jonathan Ruiz-Moreno, Haoran Peng, Niels Plomp, Ángela Del Castillo-Izquierdo, Ranko Gacesa, Esteban A Lopera-Maya, Godfrey S Temba, Vesla I Kullaya, Sander S van Leeuwen, null null, Ramnik J Xavier, Quirijn de Mast, Leo A B Joosten, Niels P Riksen, Joost H W Rutten, Mihai M Netea, Serena Sanna, Cisca Wijmenga, Rinse K Weersma, Alexandra Zhernakova, Hermie J M Harmsen, Jingyuan Fu
Host genetic regulation of human gut microbial structural variation. Nature 625 (7996) (2024)
Jiarui Ding, John J Garber, Amiko Uchida, Ariel Lefkovith, Grace T Carter, Praveen Vimalathas, Lauren Canha, Michael Dougan, Kyle Staller, Joseph Yarze, Toni Marie Delorey, Orit Rozenblatt-Rosen, Orr Ashenberg, Daniel B Graham, Jacques Deguine, Aviv Regev, Ramnik J Xavier
An esophagus cell atlas reveals dynamic rewiring during active eosinophilic esophagitis and remission. Nature communications 15 (1) (2024)
Ilona Neale, Clark Reddy, Zher Yin Tan, Bihua Li, Partha P Nag, Joshua Park, Jihye Park, Kimberly L Carey, Daniel B Graham, Ramnik J Xavier
Small-molecule probe for IBD risk variant GPR65 I231L alters cytokine signaling networks through positive allosteric modulation. Science advances 10 (29) (2024)
Ilona Neale, Clark Reddy, Zher Yin Tan, Bihua Li, Partha P Nag, Joshua Park, Jihye Park, Kimberly L Carey, Daniel B Graham, Ramnik J Xavier
Small-molecule probe for IBD risk variant GPR65 I231L alters cytokine signaling networks through positive allosteric modulation. Science advances 10 (29) (2024)
Ilona Neale, Clark Reddy, Zher Yin Tan, Bihua Li, Partha P Nag, Joshua Park, Jihye Park, Kimberly L Carey, Daniel B Graham, Ramnik J Xavier
Small-molecule probe for IBD risk variant GPR65 I231L alters cytokine signaling networks through positive allosteric modulation. Science advances 10 (29) (2024)
Daria V Zhernakova, Dao-Ming Wang, Lei Liu, Sergio Andreu-Sánchez, Yue Zhang, Angel Jonathan Ruiz-Moreno, Haoran Peng, Niels Plomp, Ángela Del Castillo-Izquierdo, Ranko Gacesa, Esteban A Lopera-Maya, Godfrey S Temba, Vesla I Kullaya, Sander S van Leeuwen, null null, Ramnik J Xavier, Quirijn de Mast, Leo A B Joosten, Niels P Riksen, Joost H W Rutten, Mihai M Netea, Serena Sanna, Cisca Wijmenga, Rinse K Weersma, Alexandra Zhernakova, Hermie J M Harmsen, Jingyuan Fu
Host genetic regulation of human gut microbial structural variation. Nature (2024)
Jiarui Ding, John J Garber, Amiko Uchida, Ariel Lefkovith, Grace T Carter, Praveen Vimalathas, Lauren Canha, Michael Dougan, Kyle Staller, Joseph Yarze, Toni Marie Delorey, Orit Rozenblatt-Rosen, Orr Ashenberg, Daniel B Graham, Jacques Deguine, Aviv Regev, Ramnik J Xavier
An esophagus cell atlas reveals dynamic rewiring during active eosinophilic esophagitis and remission. Nature communications 15 (1) (2024)
Wei Zhou, Anna S E Cuomo, Angli Xue, Masahiro Kanai, Grant Chau, Chirag Krishna, Ramnik J Xavier, Daniel G MacArthur, Joseph E Powell, Mark J Daly, Benjamin M Neale
Efficient and accurate mixed model association tool for single-cell eQTL analysis. medRxiv : the preprint server for health sciences (2024)
Jacques Deguine, Ramnik J Xavier
B cell tolerance and autoimmunity: Lessons from repertoires. The Journal of experimental medicine 221 (9) (2024)
Daria V Zhernakova, Dao-Ming Wang, Lei Liu, Sergio Andreu-Sánchez, Yue Zhang, Angel Jonathan Ruiz-Moreno, Haoran Peng, Niels Plomp, Ángela Del Castillo-Izquierdo, Ranko Gacesa, Esteban A Lopera-Maya, Godfrey S Temba, Vesla I Kullaya, Sander S van Leeuwen, null null, Ramnik J Xavier, Quirijn de Mast, Leo A B Joosten, Niels P Riksen, Joost H W Rutten, Mihai M Netea, Serena Sanna, Cisca Wijmenga, Rinse K Weersma, Alexandra Zhernakova, Hermie J M Harmsen, Jingyuan Fu
Host genetic regulation of human gut microbial structural variation. Nature 625 (7996) (2024)
Jiarui Ding, John J Garber, Amiko Uchida, Ariel Lefkovith, Grace T Carter, Praveen Vimalathas, Lauren Canha, Michael Dougan, Kyle Staller, Joseph Yarze, Toni Marie Delorey, Orit Rozenblatt-Rosen, Orr Ashenberg, Daniel B Graham, Jacques Deguine, Aviv Regev, Ramnik J Xavier
An esophagus cell atlas reveals dynamic rewiring during active eosinophilic esophagitis and remission. Nature communications 15 (1) (2024)
Daria V Zhernakova, Dao-Ming Wang, Lei Liu, Sergio Andreu-Sánchez, Yue Zhang, Angel Jonathan Ruiz-Moreno, Haoran Peng, Niels Plomp, Ángela Del Castillo-Izquierdo, Ranko Gacesa, Esteban A Lopera-Maya, Godfrey S Temba, Vesla I Kullaya, Sander S van Leeuwen, null null, Ramnik J Xavier, Quirijn de Mast, Leo A B Joosten, Niels P Riksen, Joost H W Rutten, Mihai M Netea, Serena Sanna, Cisca Wijmenga, Rinse K Weersma, Alexandra Zhernakova, Hermie J M Harmsen, Jingyuan Fu
Host genetic regulation of human gut microbial structural variation. Nature 625 (7996) (2024)
Daria V Zhernakova, Dao-Ming Wang, Lei Liu, Sergio Andreu-Sánchez, Yue Zhang, Angel Jonathan Ruiz-Moreno, Haoran Peng, Niels Plomp, Ángela Del Castillo-Izquierdo, Ranko Gacesa, Esteban A Lopera-Maya, Godfrey S Temba, Vesla I Kullaya, Sander S van Leeuwen, null null, Ramnik J Xavier, Quirijn de Mast, Leo A B Joosten, Niels P Riksen, Joost H W Rutten, Mihai M Netea, Serena Sanna, Cisca Wijmenga, Rinse K Weersma, Alexandra Zhernakova, Hermie J M Harmsen, Jingyuan Fu
Host genetic regulation of human gut microbial structural variation. Nature 625 (7996) (2024)
Matthew DeFelice, Jonna L Grimsby, Daniel P Howrigan, Kai Yuan, Sinéad B Chapman, Christine R Stevens, Samuel DeLuca, Megan Townsend, Joseph D Buxbaum, Margaret Pericak-Vance, Shengying Qin, Dan J Stein, Solomon Teferra, Ramnik J Xavier, Hailiang Huang, Alicia R Martin, Benjamin M Neale
Blended Genome Exome (BGE) as a Cost Efficient Alternative to Deep Whole Genomes or Arrays. bioRxiv : the preprint server for biology (2024)
Jacques Deguine, Ramnik J Xavier
B cell tolerance and autoimmunity: Lessons from repertoires. The Journal of experimental medicine 221 (9) (2024)
Matthew DeFelice, Jonna L Grimsby, Daniel P Howrigan, Kai Yuan, Sinéad B Chapman, Christine R Stevens, Samuel DeLuca, Megan Townsend, Joseph D Buxbaum, Margaret Pericak-Vance, Shengying Qin, Dan J Stein, Solomon Teferra, Ramnik J Xavier, Hailiang Huang, Alicia R Martin, Benjamin M Neale
Blended Genome Exome (BGE) as a Cost Efficient Alternative to Deep Whole Genomes or Arrays. bioRxiv : the preprint server for biology (2024)
Daria V Zhernakova, Dao-Ming Wang, Lei Liu, Sergio Andreu-Sánchez, Yue Zhang, Angel Jonathan Ruiz-Moreno, Haoran Peng, Niels Plomp, Ángela Del Castillo-Izquierdo, Ranko Gacesa, Esteban A Lopera-Maya, Godfrey S Temba, Vesla I Kullaya, Sander S van Leeuwen, null null, Ramnik J Xavier, Quirijn de Mast, Leo A B Joosten, Niels P Riksen, Joost H W Rutten, Mihai M Netea, Serena Sanna, Cisca Wijmenga, Rinse K Weersma, Alexandra Zhernakova, Hermie J M Harmsen, Jingyuan Fu
Host genetic regulation of human gut microbial structural variation. Nature 625 (7996) (2024)
Johannes F Scheid, Basak Eraslan, Andrew Hudak, Eric M Brown, Dallis Sergio, Toni Marie Delorey, Devan Phillips, Ariel Lefkovith, Alison T Jess, Lennard W Duck, Charles O Elson, Hera Vlamakis, Damian Rafal Plichta, Jacques Deguine, Ashwin N Ananthakrishnan, Daniel B Graham, Aviv Regev, Ramnik J Xavier
Remodeling of colon plasma cell repertoire within ulcerative colitis patients. The Journal of experimental medicine 220 (4) (2023)
Zsuzsanna H McMahan, Subhash Kulkarni, Joan W Chen, Jiande Z Chen, Ramnik J Xavier, P Jay Pasricha, Dinesh Khanna
Systemic sclerosis gastrointestinal dysmotility: risk factors, pathophysiology, diagnosis and management. Nature reviews. Rheumatology 19 (3) (2023)
Kenya Honda, Munehiro Furuichi, Takaaki Kawaguchi, Marie-Madlen Pust, Keiko Yasuma-Mitobe, Damian Rafal Plichta, Naomi Hasegawa, Takashi Ohya, Shakti Bhattarai, Satoshi Sasajima, Aoto Yoshimasa, Timur Tuganbaev, Mizuki Yaginuma, Masahiro Ueda, Nobuyuki Okahashi, Kimiko Amafuji, Yuuko Kiridooshi, Kayoko Sugita, Martin Stražar, Ashwin N Skelly, Wataru Suda, Masahira Hattori, Nobuhiro Nakamoto, Silvia Caballero, Jason M Norman, Bernat Olle, Takeshi Tanoue, Makoto Arita, Vanni Bucci, Koji Atarashi, Ramnik J Xavier
Rationally-defined microbial consortia suppress multidrug-resistant proinflammatory Enterobacteriaceae via ecological control. Research square (2023)
Toru Nakata, Chenhao Li, Toufic Mayassi, Helen Lin, Koushik Ghosh, Åsa Segerstolpe, Emma L Diamond, Paula Herbst, Tommaso Biancalani, Shreya Gaddam, Saurabh Parkar, Ziqing Lu, Alok Jaiswal, Bihua Li, Elizabeth A Creasey, Ariel Lefkovith, Mark J Daly, Daniel B Graham, Ramnik J Xavier
Genetic vulnerability to Crohn's disease reveals a spatially resolved epithelial restitution program. Science translational medicine 15 (719) (2023)
Zsuzsanna H McMahan, Subhash K Kulkarni, Joan W Chen, Jiande Z Chen, Ramnik J Xavier, P Jay Pasricha, Dinesh Khanna
Systemic sclerosis gastrointestinal dysmotility: risk factors, pathophysiology, diagnosis and management. Nature reviews. Rheumatology (2023)
Zsuzsanna H McMahan, Subhash Kulkarni, Joan W Chen, Jiande Z Chen, Ramnik J Xavier, P Jay Pasricha, Dinesh Khanna
Systemic sclerosis gastrointestinal dysmotility: risk factors, pathophysiology, diagnosis and management. Nature reviews. Rheumatology (2023)
Zsuzsanna H McMahan, Subhash Kulkarni, Joan W Chen, Jiande Z Chen, Ramnik J Xavier, P Jay Pasricha, Dinesh Khanna
Systemic sclerosis gastrointestinal dysmotility: risk factors, pathophysiology, diagnosis and management. Nature reviews. Rheumatology (2023)
Zsuzsanna H McMahan, Subhash Kulkarni, Joan W Chen, Jiande Z Chen, Ramnik J Xavier, P Jay Pasricha, Dinesh Khanna
Systemic sclerosis gastrointestinal dysmotility: risk factors, pathophysiology, diagnosis and management. Nature reviews. Rheumatology (2023)
Evgenij Fiskin, Gökçen Eraslan, Maria B Alora-Palli, Juan Manuel Leyva-Castillo, Sean Kim, Heather Choe, Caleb A Lareau, Helena Lau, Emily P Finan, Isabella Teixeira-Soldano, Brenna LaBere, Anne Chu, Brian Woods, Janet Chou, Michal Slyper, Julia Waldman, Sabina Islam, Lynda C Schneider, Wanda Phipatanakul, Craig Platt, Orit Rozenblatt-Rosen, Toni Marie Delorey, Jacques Deguine, Gideon P Smith, Raif S Geha, Aviv Regev, Ramnik J Xavier
Multi-modal skin atlas identifies a multicellular immune-stromal community associated with altered cornification and specific T cell expansion in atopic dermatitis. bioRxiv : the preprint server for biology (2023)
Julia Koehler Leman, Pawel Szczerbiak, P Douglas Renfrew, Vladimir Gligorijevic, Daniel Berenberg, Tommi Vatanen, Bryn C Taylor, Chris Chandler, Stefan Janssen, Andras Pataki, Nick Carriero, Ian Fisk, Ramnik J Xavier, Rob Knight, Richard Bonneau, Tomasz Kosciolek
Sequence-structure-function relationships in the microbial protein universe. Nature communications 14 (1) (2023)
Julia Koehler Leman, Pawel Szczerbiak, P Douglas Renfrew, Vladimir Gligorijevic, Daniel Berenberg, Tommi Vatanen, Bryn C Taylor, Chris Chandler, Stefan Janssen, Andras Pataki, Nick Carriero, Ian Fisk, Ramnik J Xavier, Rob Knight, Richard Bonneau, Tomasz Kosciolek
Sequence-structure-function relationships in the microbial protein universe. Nature communications 14 (1) (2023)
Zsuzsanna H McMahan, Subhash Kulkarni, Joan W Chen, Jiande Z Chen, Ramnik J Xavier, P Jay Pasricha, Dinesh Khanna
Author Correction: Systemic sclerosis gastrointestinal dysmotility: risk factors, pathophysiology, diagnosis and management. Nature reviews. Rheumatology (2023)
Zsuzsanna H McMahan, Subhash Kulkarni, Joan W Chen, Jiande Z Chen, Ramnik J Xavier, P Jay Pasricha, Dinesh Khanna
Systemic sclerosis gastrointestinal dysmotility: risk factors, pathophysiology, diagnosis and management. Nature reviews. Rheumatology (2023)
Joachim Johansen, Koji Atarashi, Yasumichi Arai, Nobuyoshi Hirose, Søren Johannes Sørensen, Tommi Vatanen, Olli H Laitinen, Kenya Honda, Ramnik J Xavier, Simon Rasmussen, Damian Rafal Plichta
Centenarians have a diverse gut virome with the potential to modulate metabolism and promote healthy lifespan. Nature microbiology (2023)
Zsuzsanna H McMahan, Subhash Kulkarni, Joan W Chen, Jiande Z Chen, Ramnik J Xavier, P Jay Pasricha, Dinesh Khanna
Systemic sclerosis gastrointestinal dysmotility: risk factors, pathophysiology, diagnosis and management. Nature reviews. Rheumatology 19 (3) (2023)
Matthias Zilbauer, Kylie Renee James, Mandeep Kaur, Sebastian Pott, Zhixin Li, Albert Burger, Jay R Thiagarajah, Joseph Burclaff, Frode L Jahnsen, Francesca Perrone, Alexander D Ross, Gianluca Matteoli, Nathalie Stakenborg, Tomohisa Sujino, Andreas E Moor, Raquel Bartolomé Casado, Espen S Bækkevold, Ran Zhou, Bingqing Xie, Ken S Lau, Shahida Din, Scott T Magness, Qiuming Yao, Semir Beyaz, Mark J Arends, Alexandre Denadai-Souza, Lori A Coburn, Jellert T Gaublomme, Richard A Baldock, Irene Papatheodorou, José Ordovas-Montañes, Guy E Boeckxstaens, Anna Hupalowska, Sarah A Teichmann, Aviv Regev, Ramnik J Xavier, Alison Simmons, Michael Paul Snyder, Keith T Wilson, null null, null null
A Roadmap for the Human Gut Cell Atlas. Nature reviews. Gastroenterology & hepatology (2023)
James T Morton, Dong-Min Jin, Robert H Mills, Yan Shao, Gibraan Rahman, Daniel McDonald, Qiyun Zhu, Metin Balaban, Yueyu Jiang, Kalen Cantrell, Antonio Gonzalez, Julie Carmel, Linoy Mia Frankiensztajn, Sandra Martin-Brevet, Kirsten Berding, Brittany D Needham, María Fernanda Zurita, Maude David, Olga V Averina, Alexey S Kovtun, Antonio Noto, Michele Mussap, Mingbang Wang, Daniel N Frank, Ellen Li, Wen-Hao Zhou, Vassilios Fanos, Valery N Danilenko, Dennis Paul Wall, Paúl Andrés Cárdenas, Manuel E Baldeón, Sebastien Jacquemont, Omry Koren, Evan Elliott, Ramnik J Xavier, Sarkis K Mazmanian, Rob Knight, Jack A Gilbert, Sharon M Donovan, Trevor D Lawley, Bob Carpenter, Richard Bonneau, Gaspar Taroncher-Oldenburg
Multi-level analysis of the gut-brain axis shows autism spectrum disorder-associated molecular and microbial profiles. Nature neuroscience (2023)
Zsuzsanna H McMahan, Subhash Kulkarni, Joan W Chen, Jiande Z Chen, Ramnik J Xavier, P Jay Pasricha, Dinesh Khanna
Systemic sclerosis gastrointestinal dysmotility: risk factors, pathophysiology, diagnosis and management. Nature reviews. Rheumatology 19 (3) (2023)
Robert Lyle McPherson, Christine R Isabella, Rebecca L Walker, Dallis Sergio, Sunhee Bae, Tony Gaca, Smrithi Raman, Le Thanh Tu Nguyen, Darryl A Wesener, Melanie Halim, Michael G Wuo, Amanda Dugan, Robert Kerby, Soumi Ghosh, Federico E Rey, Catherine Dhennezel, Gleb Pishchany, Valerie Lensch, Hera Vlamakis, Eric John Alm, Ramnik J Xavier, Laura L Kiessling
Lectin-Seq: A method to profile lectin-microbe interactions in native communities. Science advances 9 (30) (2023)
Emily C Gentry, Stephanie L Collins, Morgan Panitchpakdi, Pedro Belda Ferre, Allison K Stewart, Marvic Carrillo Terrazas, Hsueh-Han Lu, Simone Zuffa, Tingting Yan, Julian Avila Pacheco, Damian Rafal Plichta, Allegra T Aron, Mingxun Wang, Alan K Jarmusch, Fuhua Hao, Mashette Syrkin-Nikolau, Hera Vlamakis, Ashwin N Ananthakrishnan, Brigid Boland, Amy Hemperly, Niels Vande Casteele, Frank J Gonzalez, Andrew T Chan, Ramnik J Xavier, Hiutung Chu, Erin S Baker, Andrew D Patterson, Rob Knight, Dionicio Siegel, Pieter C Dorrestein
Reverse metabolomics for the discovery of chemical structures from humans. Nature (2023)
Johannes F Scheid, Basak Eraslan, Andrew Hudak, Eric M Brown, Dallis Sergio, Toni Marie Delorey, Devan Phillips, Ariel Lefkovith, Alison T Jess, Lennard W Duck, Charles O Elson, Hera Vlamakis, Damian Rafal Plichta, Jacques Deguine, Ashwin N Ananthakrishnan, Daniel B Graham, Aviv Regev, Ramnik J Xavier
Remodeling of colon plasma cell repertoire within ulcerative colitis patients. The Journal of experimental medicine 220 (4) (2023)
Julia Koehler Leman, Pawel Szczerbiak, P Douglas Renfrew, Vladimir Gligorijevic, Daniel Berenberg, Tommi Vatanen, Bryn C Taylor, Chris Chandler, Stefan Janssen, Andras Pataki, Nick Carriero, Ian Fisk, Ramnik J Xavier, Rob Knight, Richard Bonneau, Tomasz Kosciolek
Sequence-structure-function relationships in the microbial protein universe. Nature communications 14 (1) (2023)
Johannes F Scheid, Basak Eraslan, Andrew Hudak, Eric M Brown, Dallis Sergio, Toni Marie Delorey, Devan Phillips, Ariel Lefkovith, Alison T Jess, Lennard W Duck, Charles O Elson, Hera Vlamakis, Damian Rafal Plichta, Jacques Deguine, Ashwin N Ananthakrishnan, Daniel B Graham, Aviv Regev, Ramnik J Xavier
Remodeling of colon plasma cell repertoire within ulcerative colitis patients. The Journal of experimental medicine 220 (4) (2023)
Johannes F Scheid, Basak Eraslan, Andrew Hudak, Eric M Brown, Dallis Sergio, Toni Marie Delorey, Devan Phillips, Ariel Lefkovith, Alison T Jess, Lennard W Duck, Charles O Elson, Hera Vlamakis, Damian Rafal Plichta, Jacques Deguine, Ashwin N Ananthakrishnan, Daniel B Graham, Aviv Regev, Ramnik J Xavier
Remodeling of colon plasma cell repertoire within ulcerative colitis patients. The Journal of experimental medicine 220 (4) (2023)
Julia Koehler Leman, Pawel Szczerbiak, P Douglas Renfrew, Vladimir Gligorijevic, Daniel Berenberg, Tommi Vatanen, Bryn C Taylor, Chris Chandler, Stefan Janssen, Andras Pataki, Nick Carriero, Ian Fisk, Ramnik J Xavier, Rob Knight, Richard Bonneau, Tomasz Kosciolek
Sequence-structure-function relationships in the microbial protein universe. Nature communications 14 (1) (2023)
Zsuzsanna H McMahan, Subhash K Kulkarni, Joan W Chen, Jiande Z Chen, Ramnik J Xavier, P Jay Pasricha, Dinesh Khanna
Systemic sclerosis gastrointestinal dysmotility: risk factors, pathophysiology, diagnosis and management. Nature reviews. Rheumatology (2023)
Johannes F Scheid, Basak Eraslan, Andrew Hudak, Eric M Brown, Dallis Sergio, Toni Marie Delorey, Devan Phillips, Ariel Lefkovith, Alison T Jess, Lennard W Duck, Charles O Elson, Hera Vlamakis, Damian Rafal Plichta, Jacques Deguine, Ashwin N Ananthakrishnan, Daniel B Graham, Aviv Regev, Ramnik J Xavier
Remodeling of colon plasma cell repertoire within ulcerative colitis patients. The Journal of experimental medicine 220 (4) (2023)
Zsuzsanna H McMahan, Subhash Kulkarni, Joan W Chen, Jiande Z Chen, Ramnik J Xavier, P Jay Pasricha, Dinesh Khanna
Systemic sclerosis gastrointestinal dysmotility: risk factors, pathophysiology, diagnosis and management. Nature reviews. Rheumatology 19 (3) (2023)
Basak Eraslan, Eric Brown, Maura Benson, Liat Amir-Zilberstein, Sung-Moo Park, Betsabeh Tusi, Vladislav Pokatayev, Cody Hecht, Novalia Pishesha, Devan Phillips, Andy Kim, Shuting Zhang, Anthony Gaca, Fadi Ghantous, Toni Marie Delorey, Jonathan Livny, Lindsey Baden, Orit Rozenblatt-Rosen, Daniel B Graham, Aviv Regev, Michael Seaman, Ann Woolley, Lisa Cosimi, Deborah Hung, Jacques Deguine, Ramnik J Xavier
Functional analyses and single cell immunoprofiling uncover sex-specific differences in SARS-CoV2 immune memory development. Research square (2022)
Guadalupe J Jasso, Alok Jaiswal, Mukund Varma, Tyler Laszewski, Angelo Grauel, Abdifatah S Omar, Nilsa Silva, Glenn Dranoff, Jeffrey A Porter, Keith Mansfield, Viviana Cremasco, Aviv Regev, Ramnik J Xavier, Daniel B Graham
Colon stroma mediates an inflammation-driven fibroblastic response controlling matrix remodeling and healing. PLoS biology 20 (1) (2022)
Victoria M Martin, Yamini V Virkud, Ehud Dahan, Hannah L Seay, Dvir Itzkovits, Hera Vlamakis, Ramnik J Xavier, Wayne G Shreffler, Qian Yuan, Moran Yassour
Longitudinal disease-associated gut microbiome differences in infants with food protein-induced allergic proctocolitis. Microbiome 10 (1) (2022)
Donggi Paik, Lina Yao, Yancong Zhang, Sena Bae, Gabriel D D'Agostino, Minghao Zhang, Eunha Kim, Eric A Franzosa, Julian Avila Pacheco, Jordan E Bisanz, Christopher K Rakowski, Hera Vlamakis, Ramnik J Xavier, Peter J Turnbaugh, Randy S Longman, Michael R Krout, Andrew T Chan, Fraydoon Rastinejad, Curtis Huttenhower, Jun R Huh, A Sloan Devlin
Human gut bacteria produce Τ Η 17-modulating bile acid metabolites. Nature 603 (7903) (2022)
Chih-Hung Chou, Subhasis Mohanty, Heather A Kang, Lingjia Kong, Julian Avila-Pacheco, Samit R Joshi, Ikuyo Ueda, Lesley Devine, Khadir Raddassi, Kerry Pierce, Sarah Jeanfavre, Kevin Bullock, Hailong Meng, Clary Clish, Fabio R Santori, Albert C Shaw, Ramnik J Xavier
Metabolomic and transcriptomic signatures of influenza vaccine response in healthy young and older adults. Aging cell 21 (9) (2022)
Robert G Mealer, Sarah E Williams, Maxence Noel, Bo Yang, Alexandria K D'Souza, Toru Nakata, Daniel B Graham, Elizabeth A Creasey, Murat Cetinbas, Ruslan I Sadreyev, Edward M Scolnick, Christina M Woo, Jordan W Smoller, Ramnik J Xavier, Richard D Cummings
The schizophrenia-associated variant in SLC39A8 alters protein glycosylation in the mouse brain. Molecular psychiatry 27 (3) (2022)
Youxian Li, Eiichiro Watanabe, Yusuke Kawashima, Damian Rafal Plichta, Zhujun Wang, Makoto Ujike, Qi Yan Ang, Runrun Wu, Munehiro Furuichi, Kozue Takeshita, Koji Yoshida, Keita Nishiyama, Sean M Kearney, Wataru Suda, Masahira Hattori, Satoshi Sasajima, Takahiro Matsunaga, Xiaoxi Zhang, Kazuto Watanabe, Jun Fujishiro, Jason M Norman, Bernat Olle, Shutoku Matsuyama, Ho Namkoong, Yoshifumi Uwamino, Makoto Ishii, Koichi Fukunaga, Naoki Hasegawa, Osamu Ohara, Ramnik J Xavier, Koji Atarashi, Kenya Honda
Identification of trypsin-degrading commensals in the large intestine. Nature 609 (7927) (2022)
Karthik A Jagadeesh, Kushal K Dey, Daniel T Montoro, Rahul Mohan, Steven Gazal, Jesse M Engreitz, Ramnik J Xavier, Alkes L Price, Aviv Regev
Identifying disease-critical cell types and cellular processes by integrating single-cell RNA-sequencing and human genetics. Nature genetics 54 (10) (2022)
Sarah E Williams, Maxence Noel, Sylvain Lehoux, Murat Cetinbas, Ramnik J Xavier, Ruslan I Sadreyev, Edward M Scolnick, Jordan W Smoller, Richard D Cummings, Robert G Mealer
Mammalian brain glycoproteins exhibit diminished glycan complexity compared to other tissues. Nature communications 13 (1) (2022)
Daniel F Rojas-Tapias, Eric M Brown, Emily R Temple, Michelle A Onyekaba, Ahmed M T Mohamed, Kellyanne Duncan, Melanie Schirmer, Rebecca L Walker, Toufic Mayassi, Kerry A Pierce, Julian Avila Pacheco, Andrew T Chan, Hera Vlamakis, Ramnik J Xavier
Inflammation-associated nitrate facilitates ectopic colonization of oral bacterium Veillonella parvula in the intestine. Nature microbiology 7 (10) (2022)
Xiangjun Chen, Alok Jaiswal, Zachary Costliow, Paula Herbst, Elizabeth A Creasey, Noriko Oshiro-Rapley, Mark J Daly, Kimberly L Carey, Daniel B Graham, Ramnik J Xavier
pH sensing controls tissue inflammation by modulating cellular metabolism and endo-lysosomal function of immune cells. Nature immunology 23 (7) (2022)
Munhyung Bae, Chelsi D Cassilly, Xiaoxi Liu, Sung-Moo Park, Betsabeh Khoramian Tusi, Xiangjun Chen, Jaeyoung Kwon, Pavel Filipčík, Andrew S Bolze, Zehua Liu, Hera Vlamakis, Daniel B Graham, Sara J Buhrlage, Ramnik J Xavier, Jon Clardy
Akkermansia muciniphila phospholipid induces homeostatic immune responses. Nature 608 (7921) (2022)
Kimberly L Carey, Kai Liu, Ramnik J Xavier
Innate host defense mechanisms SAC bacteria by regulating phosphoinositide kinases and phosphatases. Autophagy (2021)
Maziar Divangahi, Peter Aaby, Shabaana Abdul Khader, Luis B Barreiro, Siroon Bekkering, Triantafyllos Chavakis, Reinout van Crevel, Nigel Curtis, Andrew R DiNardo, Mihai G Netea, Raphael Duivenvoorden, Stephanie Fanucchi, Zahi Adel Fayad, Elaine Fuchs, Melanie Anne Hamon, Kate L Jeffrey, Nargis Khan, Leo A B Joosten, Eva Kaufmann, Eicke Latz, Giuseppe Matarese, Jos W M van der Meer, Musa M Mhlanga, Simone J C F M Moorlag, Willem J M Mulder, Shruti Naik, Boris Novakovic, Luke Anthony John O'Neill, Jordi Ochando, Keiko Ozato, Niels P Riksen, Robert Sauerwein, Edward R Sherwood, Andreas Schlitzer, Joachim L Schultze, Michael H Sieweke, Christine Stabell Benn, Henk Stunnenberg, Joseph C Sun, Frank L van de Veerdonk, Sebastian Weis, David L Williams, Ramnik J Xavier, Mihai M Netea
Trained immunity, tolerance, priming and differentiation: distinct immunological processes. Nature immunology 22 (1) (2021)
Rebecca L Walker, Hera Vlamakis, Jonathan Wei Jie Lee, Luke A Besse, Vanessa Xanthakis, Ramachandran S Vasan, Stanley Y Shaw, Ramnik J Xavier
Population study of the gut microbiome: associations with diet, lifestyle, and cardiometabolic disease. Genome medicine 13 (1) (2021)
Martin Stražar, Vera P Mourits, Valerie A C M Koeken, L Charlotte J de Bree, Simone J C F M Moorlag, Leo A B Joosten, Reinout van Crevel, Hera Vlamakis, Mihai G Netea, Ramnik J Xavier
The influence of the gut microbiome on BCG-induced trained immunity. Genome biology 22 (1) (2021)
Liang Xie, Craig I McKenzie, Xinyan Qu, Yan Mu, Quanbo Wang, Nan Bing, Karmella Naidoo, Md Jahangir Alam, Di Yu, Fang Gong, Caroline Ang, Remy Robert, Francine Z Marques, Nicholas Furlotte, David Hinds, Olivier Gasser, null null, Ramnik J Xavier, Charles R Mackay
pH and Proton Sensor GPR65 Determine Susceptibility to Atopic Dermatitis. Journal of immunology (Baltimore, Md. : 1950) (2021)
Vladimir Gligorijević, P Douglas Renfrew, Tomasz Kosciolek, Julia Koehler Leman, Daniel Berenberg, Tommi Vatanen, Chris Chandler, Bryn C Taylor, Ian M Fisk, Hera Vlamakis, Ramnik J Xavier, Rob Knight, Kyunghyun Cho, Richard A Bonneau
Structure-based protein function prediction using graph convolutional networks. Nature communications 12 (1) (2021)
Martin Stražar, Godfrey S Temba, Hera Vlamakis, Vesla I Kullaya, Furaha S Lyamuya, Blandina Theophil Mmbaga, Leo A B Joosten, Andre J A M van der Ven, Mihai M Netea, Quirijn de Mast, Ramnik J Xavier
Gut microbiome-mediated metabolism effects on immunity in rural and urban African populations. Nature communications 12 (1) (2021)
Martin Stražar, Godfrey S Temba, Hera Vlamakis, Vesla I Kullaya, Furaha S Lyamuya, Blandina Theophil Mmbaga, Leo A B Joosten, Andre J A M van der Ven, Mihai M Netea, Quirijn de Mast, Ramnik J Xavier
Publisher Correction: Gut microbiome-mediated metabolism effects on immunity in rural and urban African populations. Nature communications 12 (1) (2021)
Yuko Sato, Koji Atarashi, Damian Rafal Plichta, Yasumichi Arai, Satoshi Sasajima, Sean M Kearney, Wataru Suda, Kozue Takeshita, Takahiro Sasaki, Shoki Okamoto, Ashwin N Skelly, Yuki Okamura, Hera Vlamakis, Youxian Li, Takeshi Tanoue, Hajime Takei, Hiroshi Nittono, Seiko Narushima, Junichiro Irie, Hiroshi Itoh, Kyoji Moriya, Yuki Sugiura, Makoto Suematsu, Nobuko Moritoki, Shinsuke Shibata, Dan R Littman, Michael A Fischbach, Yoshifumi Uwamino, Takashi Inoue, Akira Honda, Masahira Hattori, Tsuyoshi Murai, Ramnik J Xavier, Nobuyoshi Hirose, Kenya Honda
Novel bile acid biosynthetic pathways are enriched in the microbiome of centenarians. Nature 599 (7885) (2021)
Natalia Jaeger, Ramya Gamini, Marina Cella, Jorge L Schettini, Mattia Bugatti, Shanrong Zhao, Charles V Rosadini, Ekaterina Esaulova, Blanda Di Luccia, Baylee Kinnett, William Vermi, Maxim N Artyomov, Thomas A Wynn, Ramnik J Xavier, Scott A Jelinsky, Marco Colonna
Single-cell analyses of Crohn's disease tissues reveal intestinal intraepithelial T cells heterogeneity and altered subset distributions. Nature communications 12 (1) (2021)
Kwontae You, Lingfei Wang, Chih-Hung Chou, Kai Liu, Toru Nakata, Alok Jaiswal, Junmei Yao, Ariel Lefkovith, Abdifatah S Omar, Jacqueline G Perrigoue, Jennifer E Towne, Aviv Regev, Daniel B Graham, Ramnik J Xavier
QRICH1 dictates the outcome of ER stress through transcriptional control of proteostasis. Science (New York, N.Y.) 371 (6524) (2021)
Joseph Nasser, Drew T Bergman, Charles P Fulco, Philine Guckelberger, Benjamin R Doughty, Tejal A Patwardhan, Thouis R Jones, Tung H Nguyen, Jacob C Ulirsch, Fritz Lekschas, Kristy Mualim, Heini M Natri, Elle M Weeks, Glen Munson, Michael Kane, Helen Y Kang, Ang Cui, John P Ray, Thomas M Eisenhaure, Ryan L Collins, Kushal Dey, Hanspeter Pfister, Alkes L Price, Charles B Epstein, Anshul Kundaje, Ramnik J Xavier, Mark J Daly, Hailiang Huang, Hilary K Finucane, Nir Hacohen, Eric S Lander, Jesse M Engreitz
Genome-wide enhancer maps link risk variants to disease genes. Nature 593 (7858) (2021)
Xiaobo Ke, Kwontae You, Matthieu Pichaud, Henry J Haiser, Daniel B Graham, Hera Vlamakis, Jeffrey A Porter, Ramnik J Xavier
Gut bacterial metabolites modulate endoplasmic reticulum stress. Genome biology 22 (1) (2021)
Martin Stražar, Godfrey S Temba, Hera Vlamakis, Vesla I Kullaya, Furaha S Lyamuya, Blandina Theophil Mmbaga, Leo A B Joosten, Andre J A M van der Ven, Mihai M Netea, Quirijn de Mast, Ramnik J Xavier
Author Correction: Gut microbiome-mediated metabolism effects on immunity in rural and urban African populations. Nature communications 12 (1) (2021)
Shixian Hu, Werna T C Uniken Venema, Harm-Jan Westra, Arnau Vich Vila, Ruggero Barbieri, Michiel D Voskuil, Tjasso Blokzijl, Bernadien H Jansen, Yanni Li, Mark J Daly, Ramnik J Xavier, Gerard Dijkstra, Eleonora A Festen, Rinse K Weersma
Inflammation status modulates the effect of host genetic variation on intestinal gene expression in inflammatory bowel disease. Nature communications 12 (1) (2021)
Damian R Plichta, Juhi Somani, Matthieu Pichaud, Zachary S Wallace, Ana D Fernandes, Cory A Perugino, Harri Lähdesmäki, John H Stone, Hera Vlamakis, Daniel C Chung, Dinesh Khanna, Shiv Pillai, Ramnik J Xavier
Congruent microbiome signatures in fibrosis-prone autoimmune diseases: IgG4-related disease and systemic sclerosis. Genome medicine 13 (1) (2021)
Eduard Ansaldo, Leianna C Slayden, Krystal L Ching, Meghan A Koch, Natalie K Wolf, Damian Rafal Plichta, Eric M Brown, Daniel B Graham, Ramnik J Xavier, James J Moon, Gregory M Barton
Akkermansia muciniphila induces intestinal adaptive immune responses during homeostasis. Science (New York, N.Y.) 364 (6446) (2020)
Lianmin Chen, Valerie Collij, Martin Jaeger, Inge Christina Lamberta van den Munckhof, Arnau Vich Vila, Alexander Kurilshikov, Ranko Gacesa, Trishla Sinha, Marije Oosting, Leo A B Joosten, Joost H W Rutten, Niels P Riksen, Ramnik J Xavier, Folkert Kuipers, Cisca Wijmenga, Alexandra Zhernakova, Mihai M Netea, Rinse K Weersma, Jingyuan Fu
Gut microbial co-abundance networks show specificity in inflammatory bowel disease and obesity. Nature communications 11 (1) (2020)
Xiaonan Dong, Yuting Yang, Zhongju Zou, Yuting Zhao, Bo Ci, Lin Zhong, Madhura Bhave, Liwei Wang, Yi-Chun Kuo, Xiao Zang, Rui Zhong, Elizabeth R Aguilera, R Blake Richardson, Boris Simonetti, John W Schoggins, Julie K Pfeiffer, Li Yu, Xuewu Zhang, Yang Xie, Sandra L Schmid, Guanghua Xiao, Paul A Gleeson, Nicholas T Ktistakis, Peter J Cullen, Ramnik J Xavier, Beth Levine
Sorting nexin 5 mediates virus-induced autophagy and immunity. Nature 589 (7842) (2020)
Mukund Varma, Motohiko Kadoki, Ariel Lefkovith, Kara L Conway, Kevin MingJie Gao, Vishnu Mohanan, Betsabeh Khoramian Tusi, Daniel B Graham, Isabel J Latorre, Andrew C Tolonen, Bernard Khor, Aylwin Ng, Ramnik J Xavier
Cell Type- and Stimulation-Dependent Transcriptional Programs Regulated by Atg16L1 and Its Crohn's Disease Risk Variant T300A. Journal of immunology (Baltimore, Md. : 1950) 205 (2) (2020)
Wenting Xu, Jason S Rush, Daniel B Graham, Zhifang Cao, Ramnik J Xavier
USP15 Deubiquitinates CARD9 to Downregulate C-Type Lectin Receptor-Mediated Signaling. ImmunoHorizons 4 (10) (2020)
Nadine Fornelos, Eric A Franzosa, Jason D Bishai, John W Annand, Akihiko Oka, Jason Lloyd-Price, Timothy D Arthur, Ashley Garner, Julian Avila-Pacheco, Henry J Haiser, Andrew C Tolonen, Jeffrey A Porter, Andrew T Chan, R Balfour Sartor, Curtis Huttenhower, Hera Vlamakis, Ramnik J Xavier
Growth effects of N-acylethanolamines on gut bacteria reflect altered bacterial abundances in inflammatory bowel disease. Nature microbiology 5 (3) (2020)
Melanie Schirmer, Ashley Garner, Hera Vlamakis, Ramnik J Xavier
Microbial genes and pathways in inflammatory bowel disease. Nature reviews. Microbiology 17 (8) (2020)
Xiaofang Jiang, A Brantley Hall, Timothy D Arthur, Damian Rafal Plichta, Christian T Covington, Mathilde Poyet, Jessica Crothers, Peter L Moses, Andrew C Tolonen, Hera Vlamakis, Eric John Alm, Ramnik J Xavier
Invertible promoters mediate bacterial phase variation, antibiotic resistance, and host adaptation in the gut. Science (New York, N.Y.) 363 (6423) (2019)
Isaak E Müller, Jacob R Rubens, Tomi Jun, Daniel B Graham, Ramnik J Xavier, Timothy K Lu
Gene networks that compensate for crosstalk with crosstalk. Nature communications 10 (1) (2019)
Arnau Vich Vila, Floris Imhann, Valerie Collij, Soesma A Jankipersadsing, Thomas Gurry, Zlatan Mujagic, Alexander Kurilshikov, Marc Jan Bonder, Xiaofang Jiang, Ettje F Tigchelaar, Jackie Dekens, Vera Peters, Michiel D Voskuil, Marijn C Visschedijk, Hendrik M van Dullemen, Daniel Keszthelyi, Morris A Swertz, Lude Franke, Rudi Alberts, Eleonora A M Festen, Gerard Dijkstra, Adrian A M Masclee, Marten H Hofker, Ramnik J Xavier, Eric John Alm, Jingyuan Fu, Cisca Wijmenga, Daisy M A E Jonkers, Alexandra Zhernakova, Rinse K Weersma
Gut microbiota composition and functional changes in inflammatory bowel disease and irritable bowel syndrome. Science translational medicine 10 (472) (2019)
Yael Haberman, Rebekah Karns, Phillip J Dexheimer, Melanie Schirmer, Judith Somekh, Ingrid Jurickova, Tzipi Braun, Elizabeth Novak, Laura Bauman, Margaret H Collins, Angela Mo, Michael J Rosen, Erin Bonkowski, Nathan Gotman, Alison Marquis, Mason Nistel, Paul A Rufo, Susan S Baker, Cary G Sauer, James Markowitz, Marian D Pfefferkorn, Joel R Rosh, Brendan M Boyle, David R Mack, Robert N Baldassano, Sapana Shah, Neal S Leleiko, Melvin B Heyman, Anne M Grifiths, Ashish S Patel, Joshua D Noe, Bruce J Aronow, Subra Kugathasan, Thomas D Walters, Greg Gibson, Sonia Davis Thomas, Kevin Mollen, Shai S Shen-Orr, Curtis Huttenhower, Ramnik J Xavier, Jeffrey S Hyams, Lee A Denson
Ulcerative colitis mucosal transcriptomes reveal mitochondriopathy and personalized mechanisms underlying disease severity and treatment response. Nature communications 10 (1) (2019)
Himel Mallick, Eric A Franzosa, Lauren J Mclver, Soumya Banerjee, Alexandra Sirota-Madi, Aleksandar David Kostic, Andrew T Chan, Hera Vlamakis, Ramnik J Xavier, Curtis Huttenhower
Predictive metabolomic profiling of microbial communities using amplicon or metagenomic sequences. Nature communications 10 (1) (2019)
Bernard Khor, Kara L Conway, Abdifatah S Omar, Moshe Biton, Adam L Haber, Noga Rogel, Leigh A Baxt, Jacob Begun, Petric Kuballa, John D Gagnon, Kara G Lassen, Aviv Regev, Ramnik J Xavier
Distinct Tissue-Specific Roles for the Disease-Associated Autophagy Genes ATG16L2 and ATG16L1. Journal of immunology (Baltimore, Md. : 1950) 203 (7) (2019)
Gautam Goel, Jason A Tye-Din, Shuo-Wang Qiao, Amy K Russell, Toufic Mayassi, Cezary Ciszewski, Vikas K Sarna, Suyue Wang, Kaela E Goldstein, John L Dzuris, Leslie J Williams, Ramnik J Xavier, Prof Knut E A Lundin, Bana Jabri, Ludvig M Sollid, Robert P Anderson
Cytokine release and gastrointestinal symptoms after gluten challenge in celiac disease. Science advances 5 (8) (2019)
Daniel B Graham, Chengwei Luo, Daniel J O'Connell, Ariel Lefkovith, Eric M Brown, Moran Yassour, Mukund Varma, Jennifer G Abelin, Kara L Conway, Guadalupe J Jasso, Caline G Matar, Steven A Carr, Ramnik J Xavier
Antigen discovery and specification of immunodominance hierarchies for MHCII-restricted epitopes. Nature medicine 24 (11) (2018)
Melanie Schirmer, Eric A Franzosa, Jason Lloyd-Price, Lauren J McIver, Randall Schwager, Tiffany W Poon, Ashwin N Ananthakrishnan, Elizabeth Andrews, Gildardo Barron, Kathleen Lake, Mahadev Prasad, Jenny Sauk, Betsy Stevens, Robin G Wilson, Jonathan G Braun, Lee A Denson, Subra Kugathasan, Dermot P B McGovern, Hera Vlamakis, Ramnik J Xavier, Curtis Huttenhower
Dynamics of metatranscription in the inflammatory bowel disease gut microbiome. Nature microbiology 3 (3) (2018)
Joel M J Tan, Nora Mellouk, Suzanne E Osborne, Dustin A Ammendolia, Diana N Dyer, Ren Li, Diede Brunen, Jorik M van Rijn, Ju Huang, Mark A Czuczman, Marija A Cemma, Amy M Won, Christopher M Yip, Ramnik J Xavier, Donna A MacDuff, Fulvio Reggiori, Jayanta Debnath, Tamotsu Yoshimori, Peter K Kim, Gregory D Fairn, Etienne Coyaud, Brian Raught, Aleixo M Muise, Darren E Higgins, John H Brumell
An ATG16L1-dependent pathway promotes plasma membrane repair and limits Listeria monocytogenes cell-to-cell spread. Nature microbiology 3 (12) (2018)
Olivier B Bakker, Raul Aguirre-Gamboa, Serena Sanna, Marije Oosting, Sanne P Smeekens, Martin Jaeger, Maria Zorro, Urmo Võsa, Sebo Withoff, Romana T Netea-Maier, Hans J P M Koenen, Irma Joosten, Ramnik J Xavier, Lude Franke, Leo A B Joosten, Vinod Kumar, Cisca Wijmenga, Mihai M Netea, Yang Li
Integration of multi-omics data and deep phenotyping enables prediction of cytokine responses. Nature immunology 19 (7) (2018)
Josephine Ni, Ting-Chin David Shen, Eric Z Chen, Kyle Bittinger, Aubrey G Bailey, Manuela Roggiani, Alexandra Sirota-Madi, Elliot S Friedman, Lillian Chau, Andrew Lin, Ilana Nissim, Justin M Scott, Abigail Lauder, Christopher Hoffmann, Gloriany Rivas, Lindsey Albenberg, Robert N Baldassano, Jonathan G Braun, Ramnik J Xavier, Andrew T Chan, Mark Yudkoff, Hongzhe Li, Mark Goulian, Frederic D Bushman, James D Lewis, Gary D Wu
A role for bacterial urease in gut dysbiosis and Crohn's disease. Science translational medicine 9 (416) (2018)
Tommi Vatanen, Damian R Plichta, Juhi Somani, Philipp C Münch, Timothy D Arthur, Andrew Brantley Hall, Sabine Rudolf, Edward J Oakeley, Xiaobo Ke, Rachel A Young, Henry J Haiser, Raivo Kolde, Moran Yassour, Kristiina Luopajärvi, Heli Siljander, Suvi M Virtanen, Jorma Ilonen, Raivo Uibo, Vallo Tillmann, Sergei Mokurov, Natalya Dorshakova, Jeffrey A Porter, Alice Carolyn McHardy, Harri Lähdesmäki, Hera Vlamakis, Curtis Huttenhower, Olli H Laitinen, Ramnik J Xavier
Genomic variation and strain-specific functional adaptation in the human gut microbiome during early life. Nature microbiology 4 (3) (2018)
Eric A Franzosa, Alexandra Sirota-Madi, Julian Avila-Pacheco, Nadine Fornelos, Henry J Haiser, Stefan Reinker, Tommi Vatanen, A Brantley Hall, Himel Mallick, Lauren J McIver, Jenny S Sauk, Robin G Wilson, Betsy W Stevens, Justin M Scott, Kerry Pierce, Amy A Deik, Kevin Bullock, Floris Imhann, Jeffrey A Porter, Alexandra Zhernakova, Jingyuan Fu, Rinse K Weersma, Cisca Wijmenga, Andrew T Chan, Hera Vlamakis, Curtis Huttenhower, Ramnik J Xavier
Gut microbiome structure and metabolic activity in inflammatory bowel disease. Nature microbiology 4 (2) (2018)

Ramnik J Xavier.css-eqlu8i{font-size:small;padding-left:4px;} (Ramnik Xavier)

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Ramnik J Xavier (Ramnik Xavier)