Shyam Prabhakar

ORCID

Publication Activity (10 Years)

Years Active: 2019-2024
Publications (10 Years): 27

Top Venues

Nature genetics

Nature communications

Molecular psychiatry

Nature biotechnology

Genome Institute of Singapore

Stanford University (PHD)

This page only lists publications with an associated author ORCID identifier.

Affiliation History

Genome Institute of Singapore

Singapore

Associate Director

Education History

Stanford University

United States

PHD :: Applied Physics

Publications

Quy Xiao Xuan Lin, Deepa Rajagopalan, Akshamal M Gamage, Le Min Tan, Prasanna Nori Venkatesh, Wharton O Y Chan, Dilip Kumar, Ragini Agrawal, Yao Chen, Siew-Wai Fong, Amit Singh, Louisa J Sun, Seow-Yen Tan, Louis Yi Ann Chai, Jyoti Somani, Bernett Lee, Laurent Renia, Lisa F P Ng, Kollengode Ramanathan, Lin-Fa Wang, Barnaby Edward Young, David Lye, Amit Singhal, Shyam Prabhakar
Longitudinal single cell atlas identifies complex temporal relationship between type I interferon response and COVID-19 severity. Nature communications 15 (1) (2024)
Vipul Singhal, Nigel Chou, Joseph Jing Xian Lee, Yifei Yue, Jinyue Liu, Wan Kee Chock, Li Lin, Yun-Ching Chang, Erica Mei Ling Teo, Jonathan Aow, Hwee Kuan Lee, Kok Hao Chen, Shyam Prabhakar
BANKSY unifies cell typing and tissue domain segmentation for scalable spatial omics data analysis. Nature genetics 56 (3) (2024)
Nirmala Arul Rayan, Jonathan Aow, Michelle Gek Liang Lim, Danusa Mar Arcego, Richard Ryan, Nooshin Nourbakhsh, Randriely Merscher Sobreira de Lima, Kelly Craig, Tie-Yuan Zhang, Yeek Teck Goh, Alfred Xuyang Sun, Thomas Tompkins, Stéphane Bronner, Sylvie Binda, Josie Diorio, Carine Parent, Michael J Meaney, Shyam Prabhakar
Shared and unique transcriptomic signatures of antidepressant and probiotics action in the mammalian brain. Molecular psychiatry (2024)
Vipul Singhal, Nigel Chou, Joseph Jing Xian Lee, Yifei Yue, Jinyue Liu, Wan Kee Chock, Li Lin, Yun-Ching Chang, Erica Mei Ling Teo, Jonathan Aow, Hwee Kuan Lee, Kok Hao Chen, Shyam Prabhakar
BANKSY unifies cell typing and tissue domain segmentation for scalable spatial omics data analysis. Nature genetics 56 (3) (2024)
Vipul Singhal, Nigel Chou, Joseph Jing Xian Lee, Yifei Yue, Jinyue Liu, Wan Kee Chock, Li Lin, Yun-Ching Chang, Erica Mei Ling Teo, Jonathan Aow, Hwee Kuan Lee, Kok Hao Chen, Shyam Prabhakar
BANKSY unifies cell typing and tissue domain segmentation for scalable spatial omics data analysis. Nature genetics 56 (3) (2024)
Quy Xiao Xuan Lin, Deepa Rajagopalan, Akshamal M Gamage, Le Min Tan, Prasanna Nori Venkatesh, Wharton O Y Chan, Dilip Kumar, Ragini Agrawal, Yao Chen, Siew-Wai Fong, Amit Singh, Louisa J Sun, Seow-Yen Tan, Louis Yi Ann Chai, Jyoti Somani, Bernett Lee, Laurent Renia, Lisa F P Ng, Kollengode Ramanathan, Lin-Fa Wang, Barnaby Edward Young, David Lye, Amit Singhal, Shyam Prabhakar
Longitudinal single cell atlas identifies complex temporal relationship between type I interferon response and COVID-19 severity. Nature communications 15 (1) (2024)
Xinrui Zhou, Wan Yi Seow, Norbert Ha, Teh How Cheng, Lingfan Jiang, Jeeranan Boonruangkan, Jolene Jie Lin Goh, Shyam Prabhakar, Nigel Chou, Kok Hao Chen
Highly sensitive spatial transcriptomics using FISHnCHIPs of multiple co-expressed genes. Nature communications 15 (1) (2024)
Quy Xiao Xuan Lin, Deepa Rajagopalan, Akshamal M Gamage, Le Min Tan, Prasanna Nori Venkatesh, Wharton O Y Chan, Dilip Kumar, Ragini Agrawal, Yao Chen, Siew-Wai Fong, Amit Singh, Louisa J Sun, Seow-Yen Tan, Louis Yi Ann Chai, Jyoti Somani, Bernett Lee, Laurent Renia, Lisa F P Ng, Kollengode Ramanathan, Lin-Fa Wang, Barnaby Edward Young, David Lye, Amit Singhal, Shyam Prabhakar
Longitudinal single cell atlas identifies complex temporal relationship between type I interferon response and COVID-19 severity. Nature communications 15 (1) (2024)
Xinrui Zhou, Wan Yi Seow, Norbert Ha, Teh How Cheng, Lingfan Jiang, Jeeranan Boonruangkan, Jolene Jie Lin Goh, Shyam Prabhakar, Nigel Chou, Kok Hao Chen
Highly sensitive spatial transcriptomics using FISHnCHIPs of multiple co-expressed genes. Nature communications 15 (1) (2024)
Vipul Singhal, Nigel Chou, Joseph Jing Xian Lee, Yifei Yue, Jinyue Liu, Wan Kee Chock, Li Lin, Yun-Ching Chang, Erica Mei Ling Teo, Jonathan Aow, Hwee Kuan Lee, Kok Hao Chen, Shyam Prabhakar
BANKSY unifies cell typing and tissue domain segmentation for scalable spatial omics data analysis. Nature genetics 56 (3) (2024)
Vipul Singhal, Nigel Chou, Joseph Jing Xian Lee, Yifei Yue, Jinyue Liu, Wan Kee Chock, Li Lin, Yun-Ching Chang, Erica Mei Ling Teo, Jonathan Aow, Hwee Kuan Lee, Kok Hao Chen, Shyam Prabhakar
BANKSY unifies cell typing and tissue domain segmentation for scalable spatial omics data analysis. Nature genetics (2024)
Quy Xiao Xuan Lin, Deepa Rajagopalan, Akshamal M Gamage, Le Min Tan, Prasanna Nori Venkatesh, Wharton O Y Chan, Dilip Kumar, Ragini Agrawal, Yao Chen, Siew-Wai Fong, Amit Singh, Louisa J Sun, Seow-Yen Tan, Louis Yi Ann Chai, Jyoti Somani, Bernett Lee, Laurent Renia, Lisa F P Ng, Kollengode Ramanathan, Lin-Fa Wang, Barnaby Edward Young, David Lye, Amit Singhal, Shyam Prabhakar
Longitudinal single cell atlas identifies complex temporal relationship between type I interferon response and COVID-19 severity. Nature communications 15 (1) (2024)
Quy Xiao Xuan Lin, Deepa Rajagopalan, Akshamal M Gamage, Le Min Tan, Prasanna Nori Venkatesh, Wharton O Y Chan, Dilip Kumar, Ragini Agrawal, Yao Chen, Siew-Wai Fong, Amit Singh, Louisa J Sun, Seow-Yen Tan, Louis Yi Ann Chai, Jyoti Somani, Bernett Lee, Laurent Renia, Lisa F P Ng, Kollengode Ramanathan, Lin-Fa Wang, Barnaby Edward Young, David Lye, Amit Singhal, Shyam Prabhakar
Longitudinal single cell atlas identifies complex temporal relationship between type I interferon response and COVID-19 severity. Nature communications 15 (1) (2024)
Eleanor Wong, Nicolas Bertin, Maxime Hebrard, Roberto Tirado-Magallanes, Claire Bellis, Weng Khong Lim, Chee Yong Chua, Philomena Mei Lin Tong, Raymond Chua, Kenneth Mak, Tit Meng Lim, Wei Yang Cheong, Kwee Eng Thien, Khean Teik Goh, Jin Fang Chai, Jimmy Lee, Joseph Jao Yiu Sung, Tien Yin Wong, Calvin Woon Loong Chin, Peter D Gluckman, Liuh Ling Goh, Kenneth Hon Kim Ban, Tin Wee Tan, null null, Xueling S Sim, Ching-Yu Cheng, Sonia Davila, Neerja Karnani, Khai Pang Leong, Jian-Jun Liu, Shyam Prabhakar, Sebastian Mauer-Stroh, Chandra Shekhar Verma, Pavitra Krishnaswamy, Rick Siow Mong Goh, Irenaeus Chia, Clarissa Ho, Doreen Low, Suchin Virabhak, Jacklyn Yong, Weiling Zheng, Shih Wee Seow, Yee Kwang Seck, Mingshi Koh, John C Chambers, E-Shyong Tai, Patrick Boon-Ooi Tan
The Singapore National Precision Medicine Strategy. Nature genetics 55 (2) (2023)
Eleanor Wong, Nicolas Bertin, Maxime Hebrard, Roberto Tirado-Magallanes, Claire Bellis, Weng Khong Lim, Chee Yong Chua, Philomena Mei Lin Tong, Raymond Chua, Kenneth Mak, Tit Meng Lim, Wei Yang Cheong, Kwee Eng Thien, Khean Teik Goh, Jin Fang Chai, Jimmy Lee, Joseph Jao Yiu Sung, Tien Yin Wong, Calvin Woon Loong Chin, Peter D Gluckman, Liuh Ling Goh, Kenneth Hon Kim Ban, Tin Wee Tan, null null, Xueling S Sim, Ching-Yu Cheng, Sonia Davila, Neerja Karnani, Khai Pang Leong, Jian-Jun Liu, Shyam Prabhakar, Sebastian Mauer-Stroh, Chandra Shekhar Verma, Pavitra Krishnaswamy, Rick Siow Mong Goh, Irenaeus Chia, Clarissa Ho, Doreen Low, Suchin Virabhak, Jacklyn Yong, Weiling Zheng, Shih Wee Seow, Yee Kwang Seck, Mingshi Koh, John C Chambers, E-Shyong Tai, Patrick Boon-Ooi Tan
The Singapore National Precision Medicine Strategy. Nature genetics 55 (2) (2023)
Eleanor Wong, Nicolas Bertin, Maxime Hebrard, Roberto Tirado-Magallanes, Claire Bellis, Weng Khong Lim, Chee Yong Chua, Philomena Mei Lin Tong, Raymond Chua, Kenneth Mak, Tit Meng Lim, Wei Yang Cheong, Kwee Eng Thien, Khean Teik Goh, Jin Fang Chai, Jimmy Lee, Joseph Jao Yiu Sung, Tien Yin Wong, Calvin Woon Loong Chin, Peter D Gluckman, Liuh Ling Goh, Kenneth Hon Kim Ban, Tin Wee Tan, null null, Xueling S Sim, Ching-Yu Cheng, Sonia Davila, Neerja Karnani, Khai Pang Leong, Jian-Jun Liu, Shyam Prabhakar, Sebastian Mauer-Stroh, Chandra Shekhar Verma, Pavitra Krishnaswamy, Rick Siow Mong Goh, Irenaeus Chia, Clarissa Ho, Doreen Low, Suchin Virabhak, Jacklyn Yong, Weiling Zheng, Shih Wee Seow, Yee Kwang Seck, Mingshi Koh, John C Chambers, E-Shyong Tai, Patrick Boon-Ooi Tan
The Singapore National Precision Medicine Strategy. Nature genetics 55 (2) (2023)
Jinzhuang Dou, Yukun Tan, Kian Hong Kock, Jun Wang, Xuesen Cheng, Le Min Tan, Kyung Yeon Han, Chung-Chau Hon, Woong-Yang Park, Jay W Shin, Haijing Jin, Yujia Wang, Han Chen, Li Ding, Shyam Prabhakar, Nicholas E Navin, Rui Chen, Ken Chen
Single-nucleotide variant calling in single-cell sequencing data with Monopogen. Nature biotechnology (2023)
Eleanor Wong, Nicolas Bertin, Maxime Hebrard, Roberto Tirado-Magallanes, Claire Bellis, Weng Khong Lim, Chee Yong Chua, Philomena Mei Lin Tong, Raymond Chua, Kenneth Mak, Tit Meng Lim, Wei Yang Cheong, Kwee Eng Thien, Khean Teik Goh, Jin Fang Chai, Jimmy Lee, Joseph Jao Yiu Sung, Tien Yin Wong, Calvin Woon Loong Chin, Peter D Gluckman, Liuh Ling Goh, Kenneth Hon Kim Ban, Tin Wee Tan, null null, Xueling S Sim, Ching-Yu Cheng, Sonia Davila, Neerja Karnani, Khai Pang Leong, Jian-Jun Liu, Shyam Prabhakar, Sebastian Mauer-Stroh, Chandra Shekhar Verma, Pavitra Krishnaswamy, Rick Siow Mong Goh, Irenaeus Chia, Clarissa Ho, Doreen Low, Suchin Virabhak, Jacklyn Yong, Weiling Zheng, Shih Wee Seow, Yee Kwang Seck, Mingshi Koh, John C Chambers, E-Shyong Tai, Patrick Boon-Ooi Tan
The Singapore National Precision Medicine Strategy. Nature genetics (2023)
Ricardo C H Del Rosario, Jeremie Poschmann, Carey Lim, Catherine Y Cheng, Pavanish Kumar, Catherine Riou, Seow Theng Ong, Sherif Gerges, Hajira Shreen Hajan, Dilip Kumar, Mardiana Marzuki, Xiaohua Lu, Andrea Lee, Giovani Claresta Wijaya, Nirmala Arul Rayan, Zhong Zhuang, Elsa Du Bruyn, Cynthia Bin Eng Chee, Bernett Lee, Josephine Lum, Francesca Zolezzi, Michael Poidinger, Olaf Rotzschke, Chiea Chuen Khor, Robert J Wilkinson, Yee T Wang, George K Chandy, Gennaro De Libero, Amit Singhal, Shyam Prabhakar
Histone acetylome-wide associations in immune cells from individuals with active Mycobacterium tuberculosis infection. Nature microbiology 7 (2) (2022)
Sock Hoai Chan, Yasmin Bylstra, Jing Xian Teo, Jyn Ling Kuan, Nicolas Bertin, Mar Gonzalez-Porta, Maxime Hebrard, Roberto Tirado-Magallanes, Joanna Hui Juan Tan, Justin Jeyakani, Zhihui Li, Jin Fang Chai, Yap Seng Chong, Sonia Davila, Liuh Ling Goh, Eng Sing Lee, Eleanor Wong, Tien Yin Wong, null null, Shyam Prabhakar, Jian-Jun Liu, Ching-Yu Cheng, Birgit Eisenhaber, Neerja Karnani, Khai Pang Leong, Xueling S Sim, Khung Keong Yeo, John C Chambers, E-Shyong Tai, Patrick Boon-Ooi Tan, Saumya Shekhar Jamuar, Joanne Ngeow Yuen Yie, Weng Khong Lim
Analysis of clinically relevant variants from ancestrally diverse Asian genomes. Nature communications 13 (1) (2022)
Nirmala Arul Rayan, Vibhor Kumar, Jonathan Aow, Naghmeh Rastegar, Michelle Gek Liang Lim, Nicholas O'Toole, Edita Aliwarga, Danusa Mar Arcego, Hui Ting Grace Yeo, Jen Yi Wong, May Yin Lee, Florian Schmidt, Hajira Shreen Haja, Wai Leong Tam, Tie-Yuan Zhang, Josie Diorio, Christoph Anacker, Rene Hen, Carine Parent, Michael J Meaney, Shyam Prabhakar
Integrative multi-omics landscape of fluoxetine action across 27 brain regions reveals global increase in energy metabolism and region-specific chromatin remodelling. Molecular psychiatry (2022)
Ignasius Joanito, Pratyaksha Wirapati, Nancy Q Zhao, Zahid Nawaz, Grace Hui Ting Yeo, Yi Xin Fiona Lee, Christine L P Eng, Dominique Camat Macalinao, Merve Kahraman, Harini Srinivasan, Vairavan Lakshmanan, Sara Verbandt, Petros K Tsantoulis, Nicole Gunn, Prasanna Nori Venkatesh, Zhong Wee Poh, Rahul Nahar, Hsueh Ling Janice Oh, Jia Min Loo, Shumei Chia, Lih Feng Cheow, Elsie Cheruba, Michael Thomas Wong, Lindsay Kua, Clarinda Chua, Andrew Nguyen, Justin Golovan, Anna Gan, Wan-Jun Lim, Yu Amanda Guo, Choon Kong Yap, Brenda Tay, Yourae Hong, Dawn Qingqing Chong, Aik-Yong Chok, Woong-Yang Park, Shuting Han, Mei Huan Chang, Isaac Seow-En, Cherylin Fu, Ronnie Mathew, Ee-Lin Toh, Lewis Z Hong, Anders Jacobsen Skanderup, Ramanuj DasGupta, Chin-Ann Johnny Ong, Kiat Hon Lim, Emile K W Tan, Si-Lin Koo, Wei Qiang Leow, Sabine Tejpar, Shyam Prabhakar, Iain Beehuat Tan
Single-cell and bulk transcriptome sequencing identifies two epithelial tumor cell states and refines the consensus molecular classification of colorectal cancer. Nature genetics 54 (7) (2022)
Matias I Autio, Talal Bin Amin, Arnaud Perrin, Jen Yi Wong, Roger S-Y Foo, Shyam Prabhakar
Transposable elements that have recently been mobile in the human genome. BMC genomics 22 (1) (2021)
Bobby Ranjan, Wenjie Sun, Jinyu Park, Kunal Mishra, Florian Schmidt, Ronald Xie, Fatemeh Alipour, Vipul Singhal, Ignasius Joanito, Mohammad Amin Honardoost, Jacy Mei Yun Yong, Ee Tzun Koh, Khai Pang Leong, Nirmala Arul Rayan, Michelle Gek Liang Lim, Shyam Prabhakar
DUBStepR is a scalable correlation-based feature selection method for accurately clustering single-cell data. Nature communications 12 (1) (2021)
Gokul Ramaswami, Hyejung Won, Michael J Gandal, Jillian Haney, Jerry C Wang, Chloe C Y Wong, Wenjie Sun, Shyam Prabhakar, Jonathan S Mill, Daniel H Geschwind
Integrative genomics identifies a convergent molecular subtype that links epigenomic with transcriptomic differences in autism. Nature communications 11 (1) (2020)
Hae-Ock Lee, Yourae Hong, Hakki Emre Etlioglu, Yong Beom Cho, Valentina Pomella, Ben Van den Bosch, Jasper Vanhecke, Sara Verbandt, Hyekyung Hong, Jae-Woong Min, Nayoung Kim, Hye Hyeon Eum, Junbin Qian, Bram Boeckx, Diether Lambrechts, Petros K Tsantoulis, Gert De Hertogh, Woosung Chung, Taeseob Lee, Minae An, Hyun-Tae Shin, Je-Gun Joung, Min-Hyeok Jung, Gunhwan Ko, Pratyaksha Wirapati, Seok Hyung Kim, Hee Cheol Kim, Seong Hyeon Yun, Iain Bee Huat Tan, Bobby Ranjan, Woo Yong Lee, Tae-You Kim, Jung Kyoon Choi, Young-Joon Kim, Shyam Prabhakar, Sabine Tejpar, Woong-Yang Park
Lineage-dependent gene expression programs influence the immune landscape of colorectal cancer. Nature genetics 52 (6) (2020)
Dilip Kumar, Bernett Lee, Kia Joo Puan, Wendy Lee, Boris San Luis, Nurhashikin Yusof, Anand Kumar Andiappan, Ricardo C H Del Rosario, Jeremie Poschmann, Pavanish Kumar, Gennaro DeLibero, Amit Singhal, Shyam Prabhakar, Wang De Yun, Michael Poidinger, Olaf Rötzschke
Resistin expression in human monocytes is controlled by two linked promoter SNPs mediating NFKB p50/p50 binding and C-methylation. Scientific reports 9 (1) (2019)

Shyam Prabhakar.css-eqlu8i{font-size:small;padding-left:4px;}

Publication Activity (10 Years)

Top Topics

Top Venues

Shyam Prabhakar