Murray P Cox (M P Cox)

ResearcherID ORCID

Publication Activity (10 Years)

Years Active: 2016-2024
Publications (10 Years): 32

Top Topics

Infectious Diseases

Dna Methylation

Methicillin Resistant Staphylococcus Aureus

Top Venues

Nature communications

Nature ecology & evolution

This page only lists publications with an associated author ORCID identifier.

Publications

Mathilde André, Nicolas Brucato, Georgi Hudjasov, Vasili Pankratov, Danat Yermakovich, Francesco Montinaro, Rita Kreevan, Jason Kariwiga, John Muke, Anne Boland-Auge, Jean François Deleuze, Vincent Meyer, Nicholas Evans, Murray P Cox, Matthew Leavesley, Michael Dannemann, Tõnis Org, Mait Metspalu, Mayukh Mondal, François-Xavier Ricaut
Positive selection in the genomes of two Papua New Guinean populations at distinct altitude levels. Nature communications 15 (1) (2024)
Mathilde André, Nicolas Brucato, Georgi Hudjasov, Vasili Pankratov, Danat Yermakovich, Francesco Montinaro, Rita Kreevan, Jason Kariwiga, John Muke, Anne Boland-Auge, Jean François Deleuze, Vincent Meyer, Nicholas Evans, Murray P Cox, Matthew Leavesley, Michael Dannemann, Tõnis Org, Mait Metspalu, Mayukh Mondal, François-Xavier Ricaut
Positive selection in the genomes of two Papua New Guinean populations at distinct altitude levels. Nature communications 15 (1) (2024)
Mathilde André, Nicolas Brucato, Georgi Hudjasov, Vasili Pankratov, Danat Yermakovich, Francesco Montinaro, Rita Kreevan, Jason Kariwiga, John Muke, Anne Boland-Auge, Jean François Deleuze, Vincent Meyer, Nicholas Evans, Murray P Cox, Matthew Leavesley, Michael Dannemann, Tõnis Org, Mait Metspalu, Mayukh Mondal, François-Xavier Ricaut
Positive selection in the genomes of two Papua New Guinean populations at distinct altitude levels. Nature communications 15 (1) (2024)
Aisling Rayne, Hitaua Arahanga-Doyle, Bethany Cox, Murray P Cox, Catherine M Febria, Stephanie J Galla, Shaun C Hendy, Kirsten Locke, Anna Matheson, Aleksandra Pawlik, Tom Roa, Emma L Sharp, Leilani A Walker, Krushil Watene, Priscilla M Wehi, Tammy E Steeves
Collective action is needed to build a more just science system. Nature human behaviour (2023)
Joseph Guhlin, Marissa F Le Lec, Jana R Wold, Emily M Koot, David Winter, Patrick J Biggs, Stephanie J Galla, Lara Urban, Yasmin Foster, Murray P Cox, Andrew Digby, Lydia R Uddstrom, Daryl Eason, Deidre Vercoe, Tāne Davis, null null, Jason T Howard, Erich D Jarvis, Fiona E Robertson, Bruce C Robertson, Neil J Gemmell, Tammy E Steeves, Anna W Santure, Peter K Dearden
Species-wide genomics of kākāpō provides tools to accelerate recovery. Nature ecology & evolution (2023)
Baojun Wu, Weilong Hao, Murray P Cox
Reconstruction of gene innovation associated with major evolutionary transitions in the kingdom Fungi. BMC biology 20 (1) (2022)
Anna H Behling, David J Winter, Austen R D Ganley, Murray P Cox
Cross-kingdom transcriptomic trends in the evolution of hybrid gene expression. Journal of evolutionary biology 35 (8) (2022)
Nicolas Brucato, Mathilde André, Roxanne Tsang, Lauri Saag, Jason Kariwiga, Kylie Sesuki, Teppsy Beni, William Pomat, John Muke, Vincent Meyer, Anne Boland-Auge, Jean-François Deleuze, Herawati Sudoyo, Mayukh Mondal, Luca Pagani, Irene Gallego Romero, Mait Metspalu, Murray P Cox, Matthew Leavesley, François-Xavier Ricaut
Papua New Guinean Genomes Reveal the Complex Settlement of North Sahul. Molecular biology and evolution 38 (11) (2022)
Daniel Berry, Kate D Lee, David J Winter, Wade J Mace, Yvonne Becker, Padmaja Nagabhyru, Artemis D Treindl, Esteban Valverde Bogantes, Carolyn A Young, Adrian Leuchtmann, Linda J Johnson, Richard D Johnson, Murray P Cox, Christopher L Schardl, D Barry Scott
Cross-species transcriptomics identifies core regulatory changes differentiating the asymptomatic asexual and virulent sexual life cycles of grass-symbiotic Epichloë fungi. G3 (Bethesda, Md.) 12 (4) (2022)
Mercedes Rocafort, Joanna K Bowen, Berit Hassing, Murray P Cox, Brogan McGreal, Silvia de la Rosa, Kim M Plummer, Rosie E Bradshaw, Carl H Mesarich
The Venturia inaequalis effector repertoire is dominated by expanded families with predicted structural similarity, but unrelated sequence, to avirulence proteins from other plant-pathogenic fungi. BMC biology 20 (1) (2022)
Mathieu Quenu, Artemis D Treindl, Kate Lee, Daigo Takemoto, Torsten Thünen, Samad Ashrafi, David Winter, Austen R D Ganley, Adrian Leuchtmann, Carolyn A Young, Murray P Cox
Telomere-to-Telomere Genome Sequences across a Single Genus Reveal Highly Variable Chromosome Rearrangement Rates but Absolute Stasis of Chromosome Number. Journal of fungi (Basel, Switzerland) 8 (7) (2022)
Davide M Vespasiani, Guy S Jacobs, Laura E Cook, Nicolas Brucato, Matthew Leavesley, Christopher Kinipi, François-Xavier Ricaut, Murray P Cox, Irene Gallego Romero
Denisovan introgression has shaped the immune system of present-day Papuans. PLoS genetics 18 (12) (2022)
Baojun Wu, Murray P Cox
Comparative genomics reveals a core gene toolbox for lifestyle transitions in Hypocreales fungi. Environmental microbiology 23 (6) (2021)
Catrina Olivera, Murray P Cox, Gareth J Rowlands, Jasna Rakonjac
Correlated Transcriptional Responses Provide Insights into the Synergy Mechanisms of the Furazolidone, Vancomycin, and Sodium Deoxycholate Triple Combination in Escherichia coli. mSphere 6 (5) (2021)
Baojun Wu, Murray P Cox
Characterization of Bicistronic Transcription in Budding Yeast. mSystems 6 (1) (2021)
João C Teixeira, Guy S Jacobs, Chris B Stringer, Jonathan Tuke, Georgi Hudjashov, Gludhug A Purnomo, Herawati Sudoyo, Murray P Cox, Raymond Tobler, Chris S M Turney, Alan Cooper, Kristofer M Helgen
Widespread Denisovan ancestry in Island Southeast Asia but no evidence of substantial super-archaic hominin admixture. Nature ecology & evolution 5 (5) (2021)
Thomas L Sitter, Amy L Vaughan, Marion Schoof, Simon A Jackson, Travis R Glare, Murray P Cox, Peter C Fineran, Paul P Gardner, Mark Robin Holmes Hurst
Evolution of virulence in a novel family of transmissible mega-plasmids. Environmental microbiology 23 (9) (2021)
Matthew Denton-Giles, Hannah McCarthy, Tina Sehrish, Yasmin Dijkwel, Carl H Mesarich, Rosie E Bradshaw, Murray P Cox, Paul P Dijkwel
Conservation and expansion of a necrosis-inducing small secreted protein family from host-variable phytopathogens of the Sclerotiniaceae. Molecular plant pathology 21 (4) (2020)
Shaohong Feng, Josefin Stiller, Yuan Deng, Joel Armstrong, Qi Fang, Andrew Hart Reeve, Duo Xie, Guangii Chen, Chunxue Guo, Brant C Faircloth, Bent Petersen, Zongji Wang, Qi Zhou, Mark E Diekhans, Wanjun Chen, Sergio Andreu-Sánchez, Ashot Margaryan, Jason Travis Howard, Carole Parent, George Pacheco, Mikkel-Holger S Sinding, Lara C Puetz, Emily Louisa Cavill, Ângela M Ribeiro, Leopold Eckhart, Jon Fjeldså, Peter Andrew Hosner, Robb Thomas Brumfield, Les Christidis, Mads F Bertelsen, Thomas Sicheritz-Ponten, Dieter Thomas Tietze, Bruce C Robertson, Gang Song, Gerald Borgia, Santiago Claramunt, Irby J Lovette, Saul J Cowen, Peter Njoroge, John Philip Dumbacher, Oliver A Ryder, Jérôme Fuchs, Michael Bunce, David W Burt, Joel Cracraft, Guanliang Meng, Shannon J Hackett, Peter G Ryan, Knud Andreas Jønsson, Ian G Jamieson, Rute R da Fonseca, Edward L Braun, Peter Houde, Siavash Mirarab, Alexander Suh, Bengt Hansson, Suvi Ponnikas, Hanna Sigeman, Martin Stervander, Paul B Frandsen, Henriëtte van der Zwan, Rencia van der Sluis, Carina Visser, Christopher N Balakrishnan, Andrew G Clark, John W Fitzpatrick, Reed Bowman, Nancy Chen, Alison Cloutier, Timothy B Sackton, Scott V Edwards, Dustin J Foote, Subir B Shakya, Frederick H Sheldon, Alain Vignal, André Elias R Soares, Joshua D Kapp, Jacob Gonzalez-Solís, Joan Ferrer Obiol, Julio Rozas, Marta Riutort, Anna Tigano, Vicki Friesen, Love Dalen, Arraxi O Urrutia, Tomás Székely, Yang Liu, Michael G Campana, André Corvelo, Robert C Fleischer, Kim M Rutherford, Neil J Gemmell, Nicolas Dussex, Henrik Mouritsen, Nadine Thiele, Kira E Delmore, Miriam Liedvogel, Andre Franke, Marc P Hoeppner, Oliver Krone, Adam M Fudickar, Borja Milá, Ellen D Ketterson, Andrew Eric Fidler, Guillermo Friis, Ángela M Parody-Merino, Phil F Battley, Murray P Cox, Nicholas Costa Barroso Lima, Francisco Prosdocimi, Thomas Lee Parchman, Barney A Schlinger, Bette A Loiselle, John G Blake, Haw Chuan Lim, Lainy B Day, Matthew J Fuxjager, Maude W Baldwin, Michael J Braun, Morgan E Wirthlin, Rebecca B Dikow, T Brandt Ryder, Glauco Camenisch, Lukas F Keller, Jeffrey M DaCosta, Márk E Hauber, Matthew I M Louder, Christopher C Witt, Jimmy A McGuire, Joann Mudge, Libby C Megna, Matthew D Carling, Biao Wang, Scott A Taylor, Glaucia Del-Rio, Alexandre Aleixo, Ana Tereza Ribeiro de Vasconcelos, Claudio V Mello, Jason T Weir, David Haussler, Qiye Li, Huanming Yang, Jian Wang, Fumin Lei, Carsten Rahbek, Marcus Thomas Pius Gilbert, Gary R Graves, Erich D Jarvis, Benedict Paten, Guo-Jie Zhang
Dense sampling of bird diversity increases power of comparative genomics. Nature 587 (7833) (2020)
Heini M Natri, Katalina S Bobowik, Pradiptajati Kusuma, Chelzie Crenna Darusallam, Guy S Jacobs, Georgi Hudjashov, J Stephen Lansing, Herawati Sudoyo, Nicholas E Banovich, Murray P Cox, Irene Gallego Romero
Genome-wide DNA methylation and gene expression patterns reflect genetic ancestry and environmental differences across the Indonesian archipelago. PLoS genetics 16 (5) (2020)
G Cagnano, I Lenk, N Roulund, C S Jensen, Murray P Cox, Torben Asp
Mycelial biomass and concentration of loline alkaloids driven by complex population structure in Epichloë uncinata and meadow fescue (Schedonorus pratensis). Mycologia 112 (3) (2020)
David J Winter, Nikki D Charlton, Nick Krom, Jason Shiller, Clive H Bock, Murray P Cox, Carolyn A Young
Chromosome-Level Reference Genome of Venturia effusa, Causative Agent of Pecan Scab. Molecular plant-microbe interactions : MPMI 33 (2) (2019)
Baojun Wu, Murray P Cox
Greater genetic and regulatory plasticity of retained duplicates in Epichloë endophytic fungi. Molecular ecology 28 (23) (2019)
Ning Ning Chung, Guy S Jacobs, Herawati Sudoyo, Safarina G Malik, Lock Yue Chew, J Stephen Lansing, Murray P Cox
Sex-linked genetic diversity originates from persistent sociocultural processes at microgeographic scales. Royal Society open science 6 (8) (2019)
Nathan W Zammit, Owen M Siggs, Paul E Gray, Keisuke Horikawa, David B Langley, Stacey N Walters, Stephen R Daley, Claudia Loetsch, Joanna Warren, Jin Yan Yap, Daniele Cultrone, Amanda J Russell, Elisabeth K Malle, Jeanette E Villanueva, Mark J Cowley, Velimir Gayevskiy, Marcel E Dinger, Robert Brink, David Zahra, Geeta Chaudhri, Gunasegaran Karupiah, Belinda Whittle, Carla Roots, Edward Bertram, Michiko Yamada, Yogesh Jeelall, Anselm Enders, Benjamin E Clifton, Peter D Mabbitt, Colin J Jackson, Susan R Watson, Craig N Jenne, Lewis L Lanier, Tim Wiltshire, Matthew H Spitzer, Garry P Nolan, Frank Schmitz, Alan Aderem, Benjamin Thomas Porebski, Ashley M Buckle, Derek W Abbott, John B Ziegler, Maria E Craig, Paul Benitez-Aguirre, Juliana Teo, Stuart G Tangye, Cecile King, Melanie Wong, Murray P Cox, Wilson Phung, Jia Tang, Wendy Sandoval, Ingrid E Wertz, Daniel Christ, Christopher C Goodnow, Shane T Grey
Denisovan, modern human and mouse TNFAIP3 alleles tune A20 phosphorylation and immunity. Nature immunology 20 (10) (2019)
Andrew G Griffiths, Roger Moraga, Marni Tausen, Vikas Gupta, Timothy P Bilton, Matthew A Campbell, Rachael L Ashby, Istvan Nagy, Anar Khan, Anna Larking, Craig B Anderson, Benjamin Franzmayr, Kerry Hancock, Alicia Scott, Nick W Ellison, Murray P Cox, Torben Asp, Thomas Mailund, Mikkel Heide Schierup, Stig Uggerhøj Andersen
Breaking Free: The Genomics of Allopolyploidy-Facilitated Niche Expansion in White Clover. The Plant cell 31 (7) (2019)
David J Winter, Austen R D Ganley, Carolyn A Young, Ivan Liachko, Christopher L Schardl, Pierre-Yves Dupont, Daniel Berry, Arvina Ram, Barry Scott, Murray P Cox
Repeat elements organise 3D genome structure and mediate transcription in the filamentous fungus Epichloë festucae. PLoS genetics 14 (10) (2018)
Georgi Hudjashov, Phillip Endicott, Helen Post, Nano Nagle, Simon Y W Ho, Daniel John Lawson, Maere Reidla, Monika Karmin, Siiri Rootsi, Ene Metspalu, Lauri Saag, Richard Villems, Murray P Cox, R John Mitchell, Ralph L Garcia-Bertrand, Mait Metspalu, Rene J Herrera
Investigating the origins of eastern Polynesians using genome-wide data from the Leeward Society Isles. Scientific reports 8 (1) (2018)
Matthew A Campbell, Brian A Tapper, Wayne R Simpson, Richard D Johnson, Wade J Mace, Arvina Ram, Yonathan Lukito, Pierre-Yves Dupont, Linda J Johnson, D Barry Scott, Austen R D Ganley, Murray P Cox
Epichloë hybrida, sp. nov., an emerging model system for investigating fungal allopolyploidy. Mycologia 109 (5) (2018)
J Stephen Lansing, Cheryl Abundo, Guy S Jacobs, Elsa G Guillot, Stefan Thurner, Sean S Downey, Lock Yue Chew, Tanmoy Bhattacharya, Ning Ning Chung, Herawati Sudoyo, Murray P Cox
Kinship structures create persistent channels for language transmission. Proceedings of the National Academy of Sciences of the United States of America 114 (49) (2017)
Pierre-Yves Dupont, Murray P Cox
Genomic Data Quality Impacts Automated Detection of Lateral Gene Transfer in Fungi. G3 (Bethesda, Md.) 7 (4) (2017)
François Vallée, Aurélien Luciani, Murray P Cox
Reconstructing Demography and Social Behavior During the Neolithic Expansion from Genomic Diversity Across Island Southeast Asia. Genetics 204 (4) (2016)