Takumi Ueda

Publication Activity (10 Years)

Years Active: 2017-2024
Publications (10 Years): 20

Top Topics

Molecular Dynamics Simulations

Top Venues

Nature chemical biology

Nature communications

Chemical science

Chemical communications (Cambridge, England)

This page only lists publications with an associated author ORCID identifier.

Publications

Yuko Otani, Asami Ichinose, Xihong Wang, Zhihan Huang, Akitomo Kasahara, Mayumi Ishii, Eri Watanabe, Kayoko Kanamitsu, Kempei Tai, Hiroyuki Kusuhara, Takumi Ueda, Koh Takeuchi, Tomohiko Ohwada
An N-ortho -nitrobenzylated benzanilide amino acid enables control of the conformation and membrane permeability of cyclic peptides. Chemical communications (Cambridge, England) (2024)
Marin Yokomine, Jumpei Morimoto, Yasuhiro Fukuda, Takumi Ueda, Koh Takeuchi, Koji Umezawa, Hideo Ago, Hiroaki Matsuura, Go Ueno, Akinobu Senoo, Satoru Nagatoishi, Kouhei Tsumoto, Shinsuke Sando
A high-resolution structural characterization and physicochemical study of how a peptoid binds to an oncoprotein MDM2. Chemical science 15 (19) (2024)
Marin Yokomine, Jumpei Morimoto, Yasuhiro Fukuda, Takumi Ueda, Koh Takeuchi, Koji Umezawa, Hideo Ago, Hiroaki Matsuura, Go Ueno, Akinobu Senoo, Satoru Nagatoishi, Kouhei Tsumoto, Shinsuke Sando
A high-resolution structural characterization and physicochemical study of how a peptoid binds to an oncoprotein MDM2. Chemical science 15 (19) (2024)
Yuko Otani, Asami Ichinose, Xihong Wang, Zhihan Huang, Akitomo Kasahara, Mayumi Ishii, Eri Watanabe, Kayoko Kanamitsu, Kempei Tai, Hiroyuki Kusuhara, Takumi Ueda, Koh Takeuchi, Tomohiko Ohwada
An N-ortho -nitrobenzylated benzanilide amino acid enables control of the conformation and membrane permeability of cyclic peptides. Chemical communications (Cambridge, England) 60 (69) (2024)
Yuki Hosono, Satoshi Uchida, Moe Shinkai, Chad E Townsend, Colin N Kelly, Matthew R Naylor, Hsiau-Wei Lee, Kayoko Kanamitsu, Mayumi Ishii, Ryosuke Ueki, Takumi Ueda, Koh Takeuchi, Masatake Sugita, Yutaka Akiyama, Scott R Lokey, Jumpei Morimoto, Shinsuke Sando
Amide-to-ester substitution as a stable alternative to N-methylation for increasing membrane permeability in cyclic peptides. Nature communications 14 (1) (2023)
Wenchao Zhu, Shiori Takeuchi, Shosei Imai, Tohru Terada, Takumi Ueda, Yusuke Nasu, Takuya Terai, Robert E Campbell
Author Correction: Chemigenetic indicators based on synthetic chelators and green fluorescent protein. Nature chemical biology (2023)
Yuki Hosono, Satoshi Uchida, Moe Shinkai, Chad E Townsend, Colin N Kelly, Matthew R Naylor, Hsiau-Wei Lee, Kayoko Kanamitsu, Mayumi Ishii, Ryosuke Ueki, Takumi Ueda, Koh Takeuchi, Masatake Sugita, Yutaka Akiyama, Scott R Lokey, Jumpei Morimoto, Shinsuke Sando
Amide-to-ester substitution as a stable alternative to N-methylation for increasing membrane permeability in cyclic peptides. Nature communications 14 (1) (2023)
Yuki Hosono, Satoshi Uchida, Moe Shinkai, Chad E Townsend, Colin N Kelly, Matthew R Naylor, Hsiau-Wei Lee, Kayoko Kanamitsu, Mayumi Ishii, Ryosuke Ueki, Takumi Ueda, Koh Takeuchi, Masatake Sugita, Yutaka Akiyama, Scott R Lokey, Jumpei Morimoto, Shinsuke Sando
Amide-to-ester substitution as a stable alternative to N-methylation for increasing membrane permeability in cyclic peptides. Nature communications 14 (1) (2023)
Wenchao Zhu, Shiori Takeuchi, Shosei Imai, Tohru Terada, Takumi Ueda, Yusuke Nasu, Takuya Terai, Robert E Campbell
Author Correction: Chemigenetic indicators based on synthetic chelators and green fluorescent protein. Nature chemical biology (2023)
Wenchao Zhu, Shiori Takeuchi, Shosei Imai, Tohru Terada, Takumi Ueda, Yusuke Nasu, Takuya Terai, Robert E Campbell
Author Correction: Chemigenetic indicators based on synthetic chelators and green fluorescent protein. Nature chemical biology (2023)
Wenchao Zhu, Shiori Takeuchi, Shosei Imai, Tohru Terada, Takumi Ueda, Yusuke Nasu, Takuya Terai, Robert E Campbell
Author Correction: Chemigenetic indicators based on synthetic chelators and green fluorescent protein. Nature chemical biology (2023)
Jungyeon Kim, Hiroka Kobayashi, Marin Yokomine, Yota Shiratori, Takumi Ueda, Koh Takeuchi, Koji Umezawa, Daisuke Kuroda, Kouhei Tsumoto, Jumpei Morimoto, Shinsuke Sando
Residue-based program of a β-peptoid twisted strand shape via a cyclopentane constraint. Organic & biomolecular chemistry 20 (35) (2022)
Wenchao Zhu, Shiori Takeuchi, Shosei Imai, Tohru Terada, Takumi Ueda, Yusuke Nasu, Takuya Terai, Robert E Campbell
Chemigenetic indicators based on synthetic chelators and green fluorescent protein. Nature chemical biology (2022)
Marin Yokomine, Jumpei Morimoto, Yasuhiro Fukuda, Yota Shiratori, Daisuke Kuroda, Takumi Ueda, Koh Takeuchi, Kouhei Tsumoto, Shinsuke Sando
Oligo(N-methylalanine) as a Peptide-Based Molecular Scaffold with a Minimal Structure and High Density of Functionalizable Sites. Angewandte Chemie (International ed. in English) 61 (14) (2022)
Yoshimitsu Itoh, Shuo Chen, Ryota Hirahara, Takeshi Konda, Tsubasa Aoki, Takumi Ueda, Ichio Shimada, James J Cannon, Cheng Shao, Junichiro Shiomi, Kazuhito V Tabata, Hiroyuki Noji, Kohei Sato, Takuzo Aida
Ultrafast water permeation through nanochannels with a densely fluorous interior surface. Science (New York, N.Y.) 376 (6594) (2022)
Yutaro Shiraishi, Yutaka Kofuku, Takumi Ueda, Shubhi Pandey, Hemlata Dwivedi-Agnihotri, Arun K Shukla, Ichio Shimada
Biphasic activation of β-arrestin 1 upon interaction with a GPCR revealed by methyl-TROSY NMR. Nature communications 12 (1) (2021)
Shunsuke Imai, Tomoki Yokomizo, Yutaka Kofuku, Yutaro Shiraishi, Takumi Ueda, Ichio Shimada
Structural equilibrium underlying ligand-dependent activation of β2-adrenoreceptor. Nature chemical biology 16 (4) (2020)
Takuya Mizumura, Keita Kondo, Masatoshi Kurita, Yutaka Kofuku, Mei Natsume, Shunsuke Imai, Yutaro Shiraishi, Takumi Ueda, Ichio Shimada
Activation of adenosine A2A receptor by lipids from docosahexaenoic acid revealed by NMR. Science advances 6 (12) (2020)
Yutaro Shiraishi, Mei Natsume, Yutaka Kofuku, Shunsuke Imai, Kunio Nakata, Toshimi Mizukoshi, Takumi Ueda, Hideo Iwaï, Ichio Shimada
Phosphorylation-induced conformation of β2-adrenoceptor related to arrestin recruitment revealed by NMR. Nature communications 9 (1) (2018)
Yuichi Minato, Takumi Ueda, Asako Machiyama, Hideo Iwaï, Ichio Shimada
Dynamic domain arrangement of CheA-CheY complex regulates bacterial thermotaxis, as revealed by NMR. Scientific reports 7 (1) (2017)