Tohru Terada

Publication Activity (10 Years)

Years Active: 2016-2024
Publications (10 Years): 37

Top Topics

Structural Basis

Binding Protein

Molecular Dynamics

Top Venues

Nature communications

Nature chemical biology

This page only lists publications with an associated author ORCID identifier.

Publications

Atsushi Yamagata, Kaori Ito, Takehiro Suzuki, Naoshi Dohmae, Tohru Terada, Mikako Shirouzu
Structural basis for antiepileptic drugs and botulinum neurotoxin recognition of SV2A. Nature communications 15 (1) (2024)
Atsushi Yamagata, Kaori Ito, Takehiro Suzuki, Naoshi Dohmae, Tohru Terada, Mikako Shirouzu
Structural basis for antiepileptic drugs and botulinum neurotoxin recognition of SV2A. Nature communications 15 (1) (2024)
Fan Zhao, Yoshitaka Moriwaki, Tomohiro Noguchi, Kentaro Shimizu, Tomohisa Kuzuyama, Tohru Terada
QM/MM Study of the Catalytic Mechanism and Substrate Specificity of the Aromatic Substrate C -Methyltransferase Fur6. Biochemistry 63 (6) (2024)
Fan Zhao, Yoshitaka Moriwaki, Tomohiro Noguchi, Kentaro Shimizu, Tomohisa Kuzuyama, Tohru Terada
QM/MM Study of the Catalytic Mechanism and Substrate Specificity of the Aromatic Substrate C -Methyltransferase Fur6. Biochemistry 63 (6) (2024)
Fan Zhao, Yoshitaka Moriwaki, Tomohiro Noguchi, Kentaro Shimizu, Tomohisa Kuzuyama, Tohru Terada
QM/MM Study of the Catalytic Mechanism and Substrate Specificity of the Aromatic Substrate C -Methyltransferase Fur6. Biochemistry (2024)
Atsushi Yamagata, Kaori Ito, Takehiro Suzuki, Naoshi Dohmae, Tohru Terada, Mikako Shirouzu
Structural basis for antiepileptic drugs and botulinum neurotoxin recognition of SV2A. Nature communications 15 (1) (2024)
Atsushi Yamagata, Kaori Ito, Takehiro Suzuki, Naoshi Dohmae, Tohru Terada, Mikako Shirouzu
Structural basis for antiepileptic drugs and botulinum neurotoxin recognition of SV2A. Nature communications 15 (1) (2024)
Atsushi Yamagata, Kaori Ito, Takehiro Suzuki, Naoshi Dohmae, Tohru Terada, Mikako Shirouzu
Structural basis for antiepileptic drugs and botulinum neurotoxin recognition of SV2A. Nature communications 15 (1) (2024)
Wenchao Zhu, Shiori Takeuchi, Shosei Imai, Tohru Terada, Takumi Ueda, Yusuke Nasu, Takuya Terai, Robert E Campbell
Author Correction: Chemigenetic indicators based on synthetic chelators and green fluorescent protein. Nature chemical biology (2023)
Wenchao Zhu, Shiori Takeuchi, Shosei Imai, Tohru Terada, Takumi Ueda, Yusuke Nasu, Takuya Terai, Robert E Campbell
Author Correction: Chemigenetic indicators based on synthetic chelators and green fluorescent protein. Nature chemical biology (2023)
Wenchao Zhu, Shiori Takeuchi, Shosei Imai, Tohru Terada, Takumi Ueda, Yusuke Nasu, Takuya Terai, Robert E Campbell
Author Correction: Chemigenetic indicators based on synthetic chelators and green fluorescent protein. Nature chemical biology (2023)
Wenchao Zhu, Shiori Takeuchi, Shosei Imai, Tohru Terada, Takumi Ueda, Yusuke Nasu, Takuya Terai, Robert E Campbell
Author Correction: Chemigenetic indicators based on synthetic chelators and green fluorescent protein. Nature chemical biology (2023)
Shohei Nosaki, Nobutaka Mitsuda, Shingo Sakamoto, Kazuki Kusubayashi, Ayumi Yamagami, Yuqun Xu, Thi Bao Chau Bui, Tohru Terada, Kenji Miura, Takeshi Nakano, Masaru Tanokura, Takuya Miyakawa
Brassinosteroid-induced gene repression requires specific and tight promoter binding of BIL1/BZR1 via DNA shape readout. Nature plants 8 (12) (2022)
Atsushi Yamagata, Yoshiko Murata, Kosuke Namba, Tohru Terada, Shuya Fukai, Mikako Shirouzu
Uptake mechanism of iron-phytosiderophore from the soil based on the structure of yellow stripe transporter. Nature communications 13 (1) (2022)
Shohei Nosaki, Nobutaka Mitsuda, Shingo Sakamoto, Kazuki Kusubayashi, Ayumi Yamagami, Yuqun Xu, Thi Bao Chau Bui, Tohru Terada, Kenji Miura, Takeshi Nakano, Masaru Tanokura, Takuya Miyakawa
Brassinosteroid-induced gene repression requires specific and tight promoter binding of BIL1/BZR1 via DNA shape readout. Nature plants (2022)
Shohei Nosaki, Nobutaka Mitsuda, Shingo Sakamoto, Kazuki Kusubayashi, Ayumi Yamagami, Yuqun Xu, Thi Bao Chau Bui, Tohru Terada, Kenji Miura, Takeshi Nakano, Masaru Tanokura, Takuya Miyakawa
Brassinosteroid-induced gene repression requires specific and tight promoter binding of BIL1/BZR1 via DNA shape readout. Nature plants 8 (12) (2022)
Maki Kuzuya, Hidemi Hirano, Kenichi Hayashida, Masakatsu Watanabe, Kazumi Kobayashi, Tohru Terada, Md Iqbal Mahmood, Florence Tama, Kazutoshi Tani, Yoshinori Fujiyoshi, Atsunori Oshima
Structures of human pannexin-1 in nanodiscs reveal gating mediated by dynamic movement of the N terminus and phospholipids. Science signaling 15 (720) (2022)
Shohei Nosaki, Nobutaka Mitsuda, Shingo Sakamoto, Kazuki Kusubayashi, Ayumi Yamagami, Yuqun Xu, Thi Bao Chau Bui, Tohru Terada, Kenji Miura, Takeshi Nakano, Masaru Tanokura, Takuya Miyakawa
Brassinosteroid-induced gene repression requires specific and tight promoter binding of BIL1/BZR1 via DNA shape readout. Nature plants 8 (12) (2022)
Peng Cao, Laura Bracun, Atsushi Yamagata, Bern M Christianson, Tatsuki Negami, Baohua Zou, Tohru Terada, Daniel P Canniffe, Mikako Shirouzu, Mei Li, Lu-Ning Liu
Structural basis for the assembly and quinone transport mechanisms of the dimeric photosynthetic RC-LH1 supercomplex. Nature communications 13 (1) (2022)
Wenchao Zhu, Shiori Takeuchi, Shosei Imai, Tohru Terada, Takumi Ueda, Yusuke Nasu, Takuya Terai, Robert E Campbell
Chemigenetic indicators based on synthetic chelators and green fluorescent protein. Nature chemical biology (2022)
Shohei Nosaki, Nobutaka Mitsuda, Shingo Sakamoto, Kazuki Kusubayashi, Ayumi Yamagami, Yuqun Xu, Thi Bao Chau Bui, Tohru Terada, Kenji Miura, Takeshi Nakano, Masaru Tanokura, Takuya Miyakawa
Brassinosteroid-induced gene repression requires specific and tight promoter binding of BIL1/BZR1 via DNA shape readout. Nature plants (2022)
Shohei Nosaki, Nobutaka Mitsuda, Shingo Sakamoto, Kazuki Kusubayashi, Ayumi Yamagami, Yuqun Xu, Thi Bao Chau Bui, Tohru Terada, Kenji Miura, Takeshi Nakano, Masaru Tanokura, Takuya Miyakawa
Brassinosteroid-induced gene repression requires specific and tight promoter binding of BIL1/BZR1 via DNA shape readout. Nature plants 8 (12) (2022)
Mimin Zhang, Peng Lu, Tohru Terada, Miaomiao Sui, Haruka Furuta, Kilico Iida, Yukie Katayama, Yi Lu, Ken Okamoto, Michio Suzuki, Tomiko Asakura, Kentaro Shimizu, Fumihiko Hakuno, Shin-Ichiro Takahashi, Norimoto Shimada, Jinwei Yang, Tsutomu Ishikawa, Jin Tatsuzaki, Koji Nagata
Quercetin 3,5,7,3',4'-pentamethyl ether from Kaempferia parviflora directly and effectively activates human SIRT1. Communications biology 4 (1) (2021)
Keisuke Yanagisawa, Yoshitaka Moriwaki, Tohru Terada, Kentaro Shimizu
EXPRORER: Rational Cosolvent Set Construction Method for Cosolvent Molecular Dynamics Using Large-Scale Computation. Journal of chemical information and modeling 61 (6) (2021)
Laura Bracun, Atsushi Yamagata, Bern M Christianson, Tohru Terada, Daniel P Canniffe, Mikako Shirouzu, Lu-Ning Liu
Cryo-EM structure of the photosynthetic RC-LH1-PufX supercomplex at 2.8-Å resolution. Science advances 7 (25) (2021)
Hayama Tsutsumi, Yoshitaka Moriwaki, Tohru Terada, Kentaro Shimizu, Teppei Kawahara, Yohei Katsuyama, Yasuo Ohnishi
Structural and Molecular Basis of the Catalytic Mechanism of Geranyl Pyrophosphate C6-Methyltransferase: Creation of an Unprecedented Farnesyl Pyrophosphate C6-Methyltransferase. Angewandte Chemie (International ed. in English) (2021)
Yuichi Yokoyama, Tohru Terada, Kentaro Shimizu, Kouki Nishikawa, Daisuke Kozai, Atsuhiro Shimada, Akira Mizoguchi, Yoshinori Fujiyoshi, Kazutoshi Tani
Development of a deep learning-based method to identify "good" regions of a cryo-electron microscopy grid. Biophysical reviews 12 (2) (2020)
Kohji Murase, Yoshitaka Moriwaki, Tomoyuki Mori, Xiao Liu, Chiho Masaka, Yoshinobu Takada, Ryoko Maesaki, Masaki Mishima, Sota Fujii, Yoshinori Hirano, Zen Kawabe, Koji Nagata, Tohru Terada, Go Suzuki, Masao Watanabe, Kentaro Shimizu, Toshio Hakoshima, Seiji Takayama
Mechanism of self/nonself-discrimination in Brassica self-incompatibility. Nature communications 11 (1) (2020)
Masayuki Miyake, Tohru Terada, Michiko Shimokawa, Naohisa Sugimoto, Takatoshi Arakawa, Kentaro Shimizu, Kiyohiko Igarashi, Kiyotaka Fujita, Shinya Fushinobu
Structural analysis of β-L-arabinobiose-binding protein in the metabolic pathway of hydroxyproline-rich glycoproteins in Bifidobacterium longum. The FEBS journal 287 (23) (2020)
Tetsuhiro Ogawa, Kazutoshi Takahashi, Wataru Ishida, Toshihiro Aono, Makoto Hidaka, Tohru Terada, Haruhiko Masaki
Substrate recognition mechanism of tRNA-targeting ribonuclease, colicin D, and an insight into tRNA cleavage-mediated translation impairment. RNA biology 18 (8) (2020)
Batuujin Burendei, Ruriko Shinozaki, Masakatsu Watanabe, Tohru Terada, Kazutoshi Tani, Yoshinori Fujiyoshi, Atsunori Oshima
Cryo-EM structures of undocked innexin-6 hemichannels in phospholipids. Science advances 6 (7) (2020)
Tatsuki Negami, Mitsugu Araki, Yasushi Okuno, Tohru Terada
Calculation of absolute binding free energies between the hERG channel and structurally diverse drugs. Scientific reports 9 (1) (2019)
Atsushi Yamagata, Sakurako Goto-Ito, Yusuke Sato, Tomoko Shiroshima, Asami Maeda, Masahiko Watanabe, Takashi Saitoh, Katsumi Maenaka, Tohru Terada, Tomoyuki Yoshida, Takeshi Uemura, Shuya Fukai
Structural insights into modulation and selectivity of transsynaptic neurexin-LRRTM interaction. Nature communications 9 (1) (2018)
Kumar Nagarathinam, Yoshiko Nakada-Nakura, Christoph Parthier, Tohru Terada, Narinobu Juge, Frank Jaenecke, Kehong Liu, Yunhon Hotta, Takaaki Miyaji, Hiroshi Omote, So Iwata, Norimichi Nomura, Milton T Stubbs, Mikio Tanabe
Outward open conformation of a Major Facilitator Superfamily multidrug/H+ antiporter provides insights into switching mechanism. Nature communications 9 (1) (2018)
Yasuhiro Matsunaga, Tsutomu Yamane, Tohru Terada, Kei Moritsugu, Hiroshi Fujisaki, Satoshi Murakami, Mitsunori Ikeguchi, Akinori Kidera
Energetics and conformational pathways of functional rotation in the multidrug transporter AcrB. eLife 7 (2018)
Kei Moritsugu, Tohru Terada, Hironori Kokubo, Satoshi Endo, Toshimasa Tanaka, Akinori Kidera
Multiscale enhanced sampling of glucokinase: Regulation of the enzymatic reaction via a large scale domain motion. The Journal of chemical physics 149 (7) (2018)
Wayne K Dawson, Ryota Jono, Tohru Terada, Kentaro Shimizu
Electron Transport in a Dioxygenase-Ferredoxin Complex: Long Range Charge Coupling between the Rieske and Non-Heme Iron Center. PloS one 11 (9) (2016)