Sebastien Roch (Tandy Warnow)

Publication Activity (10 Years)

Years Active: 2019-2023
Publications (10 Years): 23

Top Topics

Genetic Diversity

Top Venues

Bioinformatics advances

Bioinformatics (Oxford, England)

Journal of computational biology : a journal of computational molecular cell biology

Algorithms for molecular biology : AMB

This page only lists publications with an associated author ORCID identifier.

Publications

Baqiao Liu, Sebastien Roch
WITCH-NG: efficient and accurate alignment of datasets with sequence length heterogeneity. Bioinformatics advances 3 (1) (2023)
Minhyuk Park, Sebastien Roch
HMMerge: an ensemble method for multiple sequence alignment. Bioinformatics advances 3 (1) (2023)
Yasamin Tabatabaee, Sebastien Roch, Sebastien Roch
QR-STAR: A Polynomial-Time Statistically Consistent Method for Rooting Species Trees Under the Coalescent. Journal of computational biology : a journal of computational molecular cell biology (2023)
Minhyuk Park, Stefan Ivanovic, Gillian Chu, Chengze Shen, Sebastien Roch
UPP2: fast and accurate alignment of datasets with fragmentary sequences. Bioinformatics (Oxford, England) 39 (1) (2023)
Minhyuk Park, Stefan Ivanovic, Gillian Chu, Chengze Shen, Sebastien Roch
UPP2: fast and accurate alignment of datasets with fragmentary sequences. Bioinformatics (Oxford, England) 39 (1) (2023)
Minhyuk Park, Sebastien Roch
HMMerge: an ensemble method for multiple sequence alignment. Bioinformatics advances 3 (1) (2023)
Gillian Chu, Sebastien Roch
SCAMPP+FastTree: improving scalability for likelihood-based phylogenetic placement. Bioinformatics advances 3 (1) (2023)
James Willson, Yasamin Tabatabaee, Baqiao Liu, Sebastien Roch
DISCO+QR: rooting species trees in the presence of GDL and ILS. Bioinformatics advances 3 (1) (2023)
James Willson, Yasamin Tabatabaee, Baqiao Liu, Sebastien Roch
DISCO+QR: rooting species trees in the presence of GDL and ILS. Bioinformatics advances 3 (1) (2023)
Baqiao Liu, Sebastien Roch
WITCH-NG: efficient and accurate alignment of datasets with sequence length heterogeneity. Bioinformatics advances 3 (1) (2023)
Minhyuk Park, Stefan Ivanovic, Gillian Chu, Chengze Shen, Sebastien Roch
UPP2: fast and accurate alignment of datasets with fragmentary sequences. Bioinformatics (Oxford, England) 39 (1) (2023)
Gillian Chu, Sebastien Roch
SCAMPP+FastTree: improving scalability for likelihood-based phylogenetic placement. Bioinformatics advances 3 (1) (2023)
Baqiao Liu, Sebastien Roch
Scalable Species Tree Inference with External Constraints. Journal of computational biology : a journal of computational molecular cell biology 29 (7) (2022)
Mark L Blaxter, John M Archibald, Anna K Childers, Jonathan A Coddington, Keith A Crandall, Federica Di Palma, Richard Durbin, Scott V Edwards, Jennifer Ann Marshall Graves, Kevin J Hackett, Neil Hall, Erich D Jarvis, Rebecca N Johnson, Elinor K Karlsson, W John Kress, Shigehiro Kuraku, Mara K N Lawniczak, Kerstin Lindblad-Toh, Jose Victor Lopez, Nancy A Moran, Gene E Robinson, Oliver A Ryder, Beth Shapiro, Pamela S Soltis, Sebastien Roch, Guo-Jie Zhang, Harris A Lewin
Why sequence all eukaryotes? Proceedings of the National Academy of Sciences of the United States of America 119 (4) (2022)
Chengze Shen, Minhyuk Park, Sebastien Roch
WITCH: Improved Multiple Sequence Alignment Through Weighted Consensus Hidden Markov Model Alignment. Journal of computational biology : a journal of computational molecular cell biology 29 (8) (2022)
Paul Zaharias, Martin Grosshauser, Sebastien Roch
Re-evaluating Deep Neural Networks for Phylogeny Estimation: The Issue of Taxon Sampling. Journal of computational biology : a journal of computational molecular cell biology 29 (1) (2022)
Yasamin Tabatabaee, Kowshika Sarker, Sebastien Roch
Quintet Rooting: rooting species trees under the multi-species coalescent model. Bioinformatics (Oxford, England) 38 (Suppl 1) (2022)
Paul Zaharias, Sebastien Roch
Recent progress on methods for estimating and updating large phylogenies. Philosophical transactions of the Royal Society of London. Series B, Biological sciences 377 (1861) (2022)
Vladimir Smirnov, Sebastien Roch
MAGUS: Multiple sequence Alignment using Graph clUStering. Bioinformatics (Oxford, England) 37 (12) (2021)
Xilin Yu, Thien Le, Sarah A Christensen, Erin K Molloy, Sebastien Roch
Using Robinson-Foulds supertrees in divide-and-conquer phylogeny estimation. Algorithms for molecular biology : AMB 16 (1) (2021)
Sarah Christensen, Erin K Molloy, Pranjal Vachaspati, Ananya Yammanuru, Sebastien Roch
Non-parametric correction of estimated gene trees using TRACTION. Algorithms for molecular biology : AMB 15 (2020)
Qiuyi Zhang, Satish Rao, Sebastien Roch
Constrained incremental tree building: new absolute fast converging phylogeny estimation methods with improved scalability and accuracy. Algorithms for molecular biology : AMB 14 (2019)
Erin K Molloy, Sebastien Roch
Statistically consistent divide-and-conquer pipelines for phylogeny estimation using NJMerge. Algorithms for molecular biology : AMB 14 (2019)