John M Archibald

Publication Activity (10 Years)

Years Active: 2017-2024
Publications (10 Years): 18

Top Topics

Gene Expression

Top Venues

bioRxiv : the preprint server for biology

Proceedings of the National Academy of Sciences of the United States of America

Genome biology and evolution

This page only lists publications with an associated author ORCID identifier.

Publications

Ella Joy H Kantor, Brent M Robicheau, Jennifer Tolman, John M Archibald, Julie LaRoche
Targeted metagenomics reveals pangenomic diversity of the nitroplast (UCYN-A) and its algal host plastid. bioRxiv : the preprint server for biology (2024)
Mariana Rius, Joshua S Rest, Gina V Filloramo, Anna M G Novák Vanclová, John M Archibald, Jackie L Collier
Horizontal gene transfer and fusion spread carotenogenesis among diverse heterotrophic protists. Genome biology and evolution (2023)
Xuehuan Feng, Jinfang Zheng, Iker Irisarri, Huihui Yu, Bo Zheng, Zahin Ali, Sophie de Vries, Jean Keller, Janine M R Fürst-Jansen, Armin Dadras, Jaccoline M S Zegers, Tim P Rieseberg, Amra Dhabalia Ashok, Tatyana Darienko, Maaike J Bierenbroodspot, Lydia Gramzow, Romy Petroll, Fabian B Haas, Noe Fernandez Pozo, Orestis Nousias, Tang Li, Elisabeth Fitzek, W Scott Grayburn, Nina Rittmeier, Charlotte Permann, Florian Rümpler, John M Archibald, Danuše Tarkowská, Jeffrey P Mower, Maike Lorenz, Henrik Buschmann, Klaus von Schwartzenberg, Lori Boston, Richard D Hayes, Christopher Daum, Kerrie W Barry, Igor V Grigoriev, Xiyin Wang, Fay-Wei Li, Stefan Andreas Rensing, Julius Ben Ari, Noa Keren, Assaf Mosquna, Andreas Holzinger, Pierre-Marc Delaux, Chi Zhang, Jinling Huang, Marek Mutwil, Jan de Vries, Yanbin Yin
Chromosome-level genomes of multicellular algal sisters to land plants illuminate signaling network evolution. bioRxiv : the preprint server for biology (2023)
Xuehuan Feng, Jinfang Zheng, Iker Irisarri, Huihui Yu, Bo Zheng, Zahin Ali, Sophie de Vries, Jean Keller, Janine M R Fürst-Jansen, Armin Dadras, Jaccoline M S Zegers, Tim P Rieseberg, Amra Dhabalia Ashok, Tatyana Darienko, Maaike J Bierenbroodspot, Lydia Gramzow, Romy Petroll, Fabian B Haas, Noe Fernandez Pozo, Orestis Nousias, Tang Li, Elisabeth Fitzek, W Scott Grayburn, Nina Rittmeier, Charlotte Permann, Florian Rümpler, John M Archibald, Danuše Tarkowská, Jeffrey P Mower, Maike Lorenz, Henrik Buschmann, Klaus von Schwartzenberg, Lori Boston, Richard D Hayes, Christopher Daum, Kerrie W Barry, Igor V Grigoriev, Xiyin Wang, Fay-Wei Li, Stefan Andreas Rensing, Julius Ben Ari, Noa Keren, Assaf Mosquna, Andreas Holzinger, Pierre-Marc Delaux, Chi Zhang, Jinling Huang, Marek Mutwil, Jan de Vries, Yanbin Yin
Chromosome-level genomes of multicellular algal sisters to land plants illuminate signaling network evolution. bioRxiv : the preprint server for biology (2023)
Lucie Gallot-Lavallée, Jon Jerlström-Hultqvist, Paula Zegarra-Vidarte, Dayana E Salas-Leiva, Courtney W Stairs, Ivan Čepička, Andrew J Roger, John M Archibald
Massive intein content in Anaeramoeba reveals aspects of intein mobility in eukaryotes. Proceedings of the National Academy of Sciences of the United States of America 120 (49) (2023)
Mariana Rius, Joshua S Rest, Gina V Filloramo, Anna M G Novák Vanclová, John M Archibald, Jackie L Collier
Horizontal Gene Transfer and Fusion Spread Carotenogenesis Among Diverse Heterotrophic Protists. Genome biology and evolution 15 (3) (2023)
Xuehuan Feng, Jinfang Zheng, Iker Irisarri, Huihui Yu, Bo Zheng, Zahin Ali, Sophie de Vries, Jean Keller, Janine M R Fürst-Jansen, Armin Dadras, Jaccoline M S Zegers, Tim P Rieseberg, Amra Dhabalia Ashok, Tatyana Darienko, Maaike J Bierenbroodspot, Lydia Gramzow, Romy Petroll, Fabian B Haas, Noe Fernandez Pozo, Orestis Nousias, Tang Li, Elisabeth Fitzek, W Scott Grayburn, Nina Rittmeier, Charlotte Permann, Florian Rümpler, John M Archibald, Danuše Tarkowská, Jeffrey P Mower, Maike Lorenz, Henrik Buschmann, Klaus von Schwartzenberg, Lori Boston, Richard D Hayes, Christopher Daum, Kerrie W Barry, Igor V Grigoriev, Xiyin Wang, Fay-Wei Li, Stefan Andreas Rensing, Julius Ben Ari, Noa Keren, Assaf Mosquna, Andreas Holzinger, Pierre-Marc Delaux, Chi Zhang, Jinling Huang, Marek Mutwil, Jan de Vries, Yanbin Yin
Chromosome-level genomes of multicellular algal sisters to land plants illuminate signaling network evolution. bioRxiv : the preprint server for biology (2023)
Mark L Blaxter, John M Archibald, Anna K Childers, Jonathan A Coddington, Keith A Crandall, Federica Di Palma, Richard Durbin, Scott V Edwards, Jennifer Ann Marshall Graves, Kevin J Hackett, Neil Hall, Erich D Jarvis, Rebecca N Johnson, Elinor K Karlsson, W John Kress, Shigehiro Kuraku, Mara K N Lawniczak, Kerstin Lindblad-Toh, Jose Victor Lopez, Nancy A Moran, Gene E Robinson, Oliver A Ryder, Beth Shapiro, Pamela S Soltis, Sebastien Roch, Guo-Jie Zhang, Harris A Lewin
Why sequence all eukaryotes? Proceedings of the National Academy of Sciences of the United States of America 119 (4) (2022)
Jong Im Kim, Goro Tanifuji, Minseok Jeong, Woongghi Shin, John M Archibald
Gene loss, pseudogenization, and independent genome reduction in non-photosynthetic species of Cryptomonas (Cryptophyceae) revealed by comparative nucleomorph genomics. BMC biology 20 (1) (2022)
Mara K N Lawniczak, Richard Durbin, Paul Flicek, Kerstin Lindblad-Toh, Xiaofeng Wei, John M Archibald, William J Baker, Katherine Belov, Mark L Blaxter, Tomas Marques-Bonet, Anna K Childers, Jonathan A Coddington, Keith A Crandall, Andrew J Crawford, Robert P Davey, Federica Di Palma, Qi Fang, Wilfried Haerty, Neil Hall, Katharina J Hoff, Kerstin Howe, Erich D Jarvis, Warren E Johnson, Rebecca N Johnson, Paul Julian Kersey, Xin Liu, Jose Victor Lopez, Eugene W Myers, Olga Vinnere Pettersson, Adam M Phillippy, Monica F Poelchau, Kim D Pruitt, Arang Rhie, Juan Carlos Castilla-Rubio, Sunil Kumar Sahu, Nicholas A Salmon, Pamela S Soltis, David Swarbreck, Françoise Thibaud-Nissen, Sibo Wang, Jill L Wegrzyn, Guo-Jie Zhang, He Zhang, Harris A Lewin, Stephen Richards
Standards recommendations for the Earth BioGenome Project. Proceedings of the National Academy of Sciences of the United States of America 119 (4) (2022)
Dayana E Salas-Leiva, Eelco C Tromer, Bruce A Curtis, Jon Jerlström-Hultqvist, Martin Kolísko, Zhenzhen Yi, Joan Sebastian Salas-Leiva, Lucie Gallot-Lavallée, Shelby K Williams, Geert J P L Kops, John M Archibald, Alastair G B Simpson, Andrew J Roger
Author Correction: Genomic analysis finds no evidence of canonical eukaryotic DNA processing complexes in a free-living protist. Nature communications 12 (1) (2021)
Dayana E Salas-Leiva, Eelco C Tromer, Bruce A Curtis, Jon Jerlström-Hultqvist, Martin Kolísko, Zhenzhen Yi, Joan Sebastian Salas-Leiva, Lucie Gallot-Lavallée, Shelby K Williams, Geert J P L Kops, John M Archibald, Alastair G B Simpson, Andrew J Roger
Genomic analysis finds no evidence of canonical eukaryotic DNA processing complexes in a free-living protist. Nature communications 12 (1) (2021)
Janine M R Fürst-Jansen, Sophie de Vries, Maike Lorenz, Klaus von Schwartzenberg, John M Archibald, Jan de Vries
Submergence of the filamentous Zygnematophyceae Mougeotia induces differential gene expression patterns associated with core metabolism and photosynthesis. Protoplasma 259 (5) (2021)
Jan de Vries, Sophie de Vries, Bruce A Curtis, Hong Zhou, Susanne Penny, Kirstin Feussner, Devanand M Pinto, Michael Steinert, Alejandro M Cohen, Klaus von Schwartzenberg, John M Archibald
Heat stress response in the closest algal relatives of land plants reveals conserved stress signaling circuits. The Plant journal : for cell and molecular biology 103 (3) (2020)
Shannon J Sibbald, Julia F Hopkins, Gina V Filloramo, John M Archibald
Ubiquitin fusion proteins in algae: implications for cell biology and the spread of photosynthesis. BMC genomics 20 (1) (2019)
Sophie de Vries, Jan de Vries, Janina K von Dahlen, Sven B Gould, John M Archibald, Laura E Rose, Claudio H Slamovits
On plant defense signaling networks and early land plant evolution. Communicative & integrative biology 11 (3) (2018)
Ugo Cenci, Shannon J Sibbald, Bruce A Curtis, Ryoma Kamikawa, Laura Eme, Daniel Moog, Bernard Henrissat, Eric Maréchal, Malika Chabi, Christophe Djemiel, Andrew J Roger, Eunsoo Kim, John M Archibald
Nuclear genome sequence of the plastid-lacking cryptomonad Goniomonas avonlea provides insights into the evolution of secondary plastids. BMC biology 16 (1) (2018)
Shannon J Sibbald, Ugo Cenci, Morgan Colp, Yana Eglit, Charles J O'Kelly, John M Archibald
Diversity and Evolution of Paramoeba spp. and their Kinetoplastid Endosymbionts. The Journal of eukaryotic microbiology 64 (5) (2017)