Thomas MacCarthy

ORCID

Publication Activity (10 Years)

Years Active: 2016-2023
Publications (10 Years): 10

Top Venues

PLoS pathogens

PLoS computational biology

BMC bioinformatics

BMC evolutionary biology

Stony Brook University

This page only lists publications with an associated author ORCID identifier.

Affiliation History

Stony Brook University Jan 01 2012

United States

Assistant Professor :: Applied Mathematics and Statistics

Publications

Zhixin Jing, Phillip Galbo, Luis Jose Ovando, Megan Demouth, Skylar Welte, Rosa Park, Kartik Chandran, Yinghao Wu, Thomas MacCarthy, Deyou Zheng, David R Fooksman
Fine-tuning spatial-temporal dynamics and surface receptor expression support plasma cell-intrinsic longevity. bioRxiv : the preprint server for biology (2023)
Guojun Yu, Yingru Wu, Zhi Duan, Catherine Tang, Haipeng Xing, Matthew D Scharff, Thomas MacCarthy
A Bayesian model based computational analysis of the relationship between bisulfite accessible single-stranded DNA in chromatin and somatic hypermutation of immunoglobulin genes. PLoS computational biology 17 (9) (2021)
Maxwell Shapiro, Laurie T Krug, Thomas MacCarthy
Mutational pressure by host APOBEC3s more strongly affects genes expressed early in the lytic phase of herpes simplex virus-1 (HSV-1) and human polyomavirus (HPyV) infection. PLoS pathogens 17 (4) (2021)
Michael T McIntosh, Siva Koganti, J Lucas Boatwright, Xiaofan Li, Salvatore V Spadaro, Alexis C Brantly, Jasmine B Ayers, Ramon D Perez, Eric M Burton, Sandeepta Burgula, Thomas MacCarthy, Sumita Bhaduri-McIntosh
STAT3 imparts BRCAness by impairing homologous recombination repair in Epstein-Barr virus-transformed B lymphocytes. PLoS pathogens 16 (10) (2020)
Marién Pascual, María Mena-Varas, Eloy Francisco Robles, Maria-Jose Garcia-Barchino, Carlos Panizo, Sandra Hervás-Stubbs, Diego Alignani, Ainara Sagardoy, Jose Ignacio Martinez-Ferrandis, Karen L Bunting, Stephen Meier, Xavier Sagaert, Davide Bagnara, Elisabeth Guruceaga, Oscar Blanco, Jon Celay, Alvaro Martínez-Baztan, Noelia Casares, Juan Jose Lasarte, Thomas MacCarthy, Ari M Melnick, Jose-Angel Martinez-Climent, Sergio Roa
PD-1/PD-L1 immune checkpoint and p53 loss facilitate tumor progression in activated B-cell diffuse large B-cell lymphomas. Blood 133 (22) (2019)
Maxwell Shapiro, Stephen Meier, Thomas MacCarthy
The cytidine deaminase under-representation reporter (CDUR) as a tool to study evolution of sequences under deaminase mutational pressure. BMC bioinformatics 19 (1) (2018)
Chaohui Yuan, Charles C Chu, Xiao-Jie Yan, Davide Bagnara, Nicholas Chiorazzi, Thomas MacCarthy
The Number of Overlapping AID Hotspots in Germline IGHV Genes Is Inversely Correlated with Mutation Frequency in Chronic Lymphocytic Leukemia. PloS one 12 (1) (2017)
Jeffrey Chen, Thomas MacCarthy
The preferred nucleotide contexts of the AID/APOBEC cytidine deaminases have differential effects when mutating retrotransposon and virus sequences compared to host genes. PLoS computational biology 13 (3) (2017)
Robert W Maul, Thomas MacCarthy, Ekaterina G Frank, Katherine A Donigan, Mary P McLenigan, William Yang, Huseyin Saribasak, Donald E Huston, Sabine S Lange, Roger Woodgate, Patricia J Gearhart
DNA polymerase ι functions in the generation of tandem mutations during somatic hypermutation of antibody genes. The Journal of experimental medicine 213 (9) (2016)
Jeewoen Shin, Thomas MacCarthy
Potential for evolution of complex defense strategies in a multi-scale model of virus-host coevolution. BMC evolutionary biology 16 (1) (2016)

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Publication Activity (10 Years)

Top Topics

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Thomas MacCarthy