Tujin Shi

ORCID

Publication Activity (10 Years)

Years Active: 2018-2024
Publications (10 Years): 41

Top Venues

Journal of proteome research

Communications biology

Analytical chemistry

Molecules (Basel, Switzerland)

Pacific Northwest National Laboratory

This page only lists publications with an associated author ORCID identifier.

Affiliation History

Pacific Northwest National Laboratory May 10 2010

United States

Senior Scientist

Publications

Dylan H Ross, Jung Yun Lee, Yuqian Gao, Adam L Hollerbach, Aivett Bilbao, Tujin Shi, Helen S C Lazzarin, Richard D Smith, Xueyun Zheng
Evaluation of a Reference-Free Collision Cross Section Calibration Strategy for Proteomics Using SLIM-Based High-Resolution Ion Mobility Spectrometry-Mass Spectrometry. Journal of the American Society for Mass Spectrometry (2024)
Dylan H Ross, Jung Yun Lee, Yuqian Gao, Adam L Hollerbach, Aivett Bilbao, Tujin Shi, Helen S C Lazzarin, Richard D Smith, Xueyun Zheng
Evaluation of a Reference-Free Collision Cross Section Calibration Strategy for Proteomics Using SLIM-Based High-Resolution Ion Mobility Spectrometry-Mass Spectrometry. Journal of the American Society for Mass Spectrometry 35 (7) (2024)
Panshak P Dakup, Song Feng, Tujin Shi, Jon M Jacobs, H Steven Wiley, Wei-Jun Qian
Targeted Quantification of Protein Phosphorylation and Its Contributions towards Mathematical Modeling of Signaling Pathways. Molecules (Basel, Switzerland) 28 (3) (2023)
Komal Abhange, Reta Birhanu Kitata, Jie Zhang, Yi-Ting Wang, Matthew J Gaffrey, Tao Liu, Valerie Gunchick, Valerie M Khaykin, Vaibhav Sahai, Kyle C Cuneo, Neehar D Parikh, Tujin Shi, David M Lubman
In-Depth Proteome Profiling of Small Extracellular Vesicles Isolated from Cancer Cell Lines and Patient Serum. Journal of proteome research 23 (1) (2023)
Reta Birhanu Kitata, Lisa Y Hu, Tai-Tu Lin, Carrie D Nicora, Thomas L Fillmore, Song Nie, Robert D Hudson, Tao Liu, Robin J Leach, Alvin Y Liu, Wei-Jun Qian, Tujin Shi
Targeted Mass Spectrometry Assays for Specific Quantification of Urinary proPSA Isoforms. Journal of proteome research 22 (3) (2023)
Komal Abhange, Reta Birhanu Kitata, Jie Zhang, Yi-Ting Wang, Matthew J Gaffrey, Tao Liu, Valerie Gunchick, Valerie M Khaykin, Vaibhav Sahai, Kyle C Cuneo, Neehar D Parikh, Tujin Shi, David M Lubman
In-Depth Proteome Profiling of Small Extracellular Vesicles Isolated from Cancer Cell Lines and Patient Serum. Journal of proteome research (2023)
Chia-Feng Tsai, Yi-Ting Wang, Chuan-Chih Hsu, Reta Birhanu Kitata, Rosalie K Chu, Marija Velickovic, Rui Zhao, Sarah M Williams, William B Chrisler, Marda L Jorgensen, Ronald J Moore, Ying Zhu, Karin D Rodland, Richard D Smith, Clive H Wasserfall, Tujin Shi, Tao Liu
A streamlined tandem tip-based workflow for sensitive nanoscale phosphoproteomics. Communications biology 6 (1) (2023)
Komal Abhange, Reta Birhanu Kitata, Jie Zhang, Yi-Ting Wang, Matthew J Gaffrey, Tao Liu, Valerie Gunchick, Valerie M Khaykin, Vaibhav Sahai, Kyle C Cuneo, Neehar D Parikh, Tujin Shi, David M Lubman
In-Depth Proteome Profiling of Small Extracellular Vesicles Isolated from Cancer Cell Lines and Patient Serum. Journal of proteome research 23 (1) (2023)
Komal Abhange, Reta Birhanu Kitata, Jie Zhang, Yi-Ting Wang, Matthew J Gaffrey, Tao Liu, Valerie Gunchick, Valerie M Khaykin, Vaibhav Sahai, Kyle C Cuneo, Neehar D Parikh, Tujin Shi, David M Lubman
In-Depth Proteome Profiling of Small Extracellular Vesicles Isolated from Cancer Cell Lines and Patient Serum. Journal of proteome research 23 (1) (2023)
Komal Abhange, Reta Birhanu Kitata, Jie Zhang, Yi-Ting Wang, Matthew J Gaffrey, Tao Liu, Valerie Gunchick, Valerie M Khaykin, Vaibhav Sahai, Kyle C Cuneo, Neehar D Parikh, Tujin Shi, David M Lubman
In-Depth Proteome Profiling of Small Extracellular Vesicles Isolated from Cancer Cell Lines and Patient Serum. Journal of proteome research 23 (1) (2023)
Reta Birhanu Kitata, Lisa Y Hu, Tai-Tu Lin, Carrie D Nicora, Thomas L Fillmore, Song Nie, Robert D Hudson, Tao Liu, Robin J Leach, Alvin Y Liu, Wei-Jun Qian, Tujin Shi
Targeted Mass Spectrometry Assays for Specific Quantification of Urinary proPSA Isoforms. Journal of proteome research (2023)
Reta Birhanu Kitata, Lisa Y Hu, Tai-Tu Lin, Carrie D Nicora, Thomas L Fillmore, Song Nie, Robert D Hudson, Tao Liu, Robin J Leach, Alvin Y Liu, Wei-Jun Qian, Tujin Shi
Targeted Mass Spectrometry Assays for Specific Quantification of Urinary proPSA Isoforms. Journal of proteome research 22 (3) (2023)
S M Jamshedur Rahman, Sheau-Chiann Chen, Yi-Ting Wang, Yuqian Gao, Athena A Schepmoes, Thomas L Fillmore, Tujin Shi, Heidi Chen, Karin D Rodland, Pierre P Massion, Eric L Grogan, Tao Liu
Validation of a Proteomic Signature of Lung Cancer Risk from Bronchial Specimens of Risk-Stratified Individuals. Cancers 15 (18) (2023)
Chia-Feng Tsai, Yi-Ting Wang, Chuan-Chih Hsu, Reta Birhanu Kitata, Rosalie K Chu, Marija Velickovic, Rui Zhao, Sarah M Williams, William B Chrisler, Marda L Jorgensen, Ronald J Moore, Ying Zhu, Karin D Rodland, Richard D Smith, Clive H Wasserfall, Tujin Shi, Tao Liu
A streamlined tandem tip-based workflow for sensitive nanoscale phosphoproteomics. Communications biology 6 (1) (2023)
Komal Abhange, Reta Birhanu Kitata, Jie Zhang, Yi-Ting Wang, Matthew J Gaffrey, Tao Liu, Valerie Gunchick, Valerie M Khaykin, Vaibhav Sahai, Kyle C Cuneo, Neehar D Parikh, Tujin Shi, David M Lubman
In-Depth Proteome Profiling of Small Extracellular Vesicles Isolated from Cancer Cell Lines and Patient Serum. Journal of proteome research 23 (1) (2023)
Emma J Schuster, Nurmaa Dashzeveg, Yuzhi Jia, Kibria Golam, Tong Zhang, Andrew Hoffman, Youbin Zhang, Chunlei Zheng, Erika Ramos, Rokana Taftaf, Lamiaa El- Shennawy, David Scholten, Reta B Kitata, Valery Adorno-Cruz, Carolina Reduzzi, Sabina Spahija, Rong Xu, Kalliopi P Siziopikou, Leonidas C Platanias, Ami Shah, William J Gradishar, Massimo Cristofanilli, Chia-Feng Tsai, Tujin Shi, Huiping Liu
Computational ranking-assisted identification of Plexin-B2 in homotypic and heterotypic clustering of circulating tumor cells in breast cancer metastasis. bioRxiv : the preprint server for biology (2023)
Panshak P Dakup, Song Feng, Tujin Shi, Jon M Jacobs, H Steven Wiley, Wei-Jun Qian
Targeted Quantification of Protein Phosphorylation and Its Contributions towards Mathematical Modeling of Signaling Pathways. Molecules (Basel, Switzerland) 28 (3) (2023)
Chia-Feng Tsai, Yi-Ting Wang, Chuan-Chih Hsu, Reta Birhanu Kitata, Rosalie K Chu, Marija Velickovic, Rui Zhao, Sarah M Williams, William B Chrisler, Marda L Jorgensen, Ronald J Moore, Ying Zhu, Karin D Rodland, Richard D Smith, Clive H Wasserfall, Tujin Shi, Tao Liu
A streamlined tandem tip-based workflow for sensitive nanoscale phosphoproteomics. Communications biology 6 (1) (2023)
Chia-Feng Tsai, Yi-Ting Wang, Chuan-Chih Hsu, Reta Birhanu Kitata, Rosalie K Chu, Marija Velickovic, Rui Zhao, Sarah M Williams, William B Chrisler, Marda L Jorgensen, Ronald J Moore, Ying Zhu, Karin D Rodland, Richard D Smith, Clive H Wasserfall, Tujin Shi, Tao Liu
A streamlined tandem tip-based workflow for sensitive nanoscale phosphoproteomics. Communications biology 6 (1) (2023)
Emma J Schuster, Nurmaa Dashzeveg, Yuzhi Jia, Kibria Golam, Tong Zhang, Andrew Hoffman, Youbin Zhang, Chunlei Zheng, Erika Ramos, Rokana Taftaf, Lamiaa El- Shennawy, David Scholten, Reta B Kitata, Valery Adorno-Cruz, Carolina Reduzzi, Sabina Spahija, Rong Xu, Kalliopi P Siziopikou, Leonidas C Platanias, Ami Shah, William J Gradishar, Massimo Cristofanilli, Chia-Feng Tsai, Tujin Shi, Huiping Liu
Computational ranking-assisted identification of Plexin-B2 in homotypic and heterotypic clustering of circulating tumor cells in breast cancer metastasis. bioRxiv : the preprint server for biology (2023)
Reta Birhanu Kitata, Lisa Y Hu, Tai-Tu Lin, Carrie D Nicora, Thomas L Fillmore, Song Nie, Robert D Hudson, Tao Liu, Robin J Leach, Alvin Y Liu, Wei-Jun Qian, Tujin Shi
Targeted Mass Spectrometry Assays for Specific Quantification of Urinary proPSA Isoforms. Journal of proteome research 22 (3) (2023)
Panshak P Dakup, Song Feng, Tujin Shi, Jon M Jacobs, H Steven Wiley, Wei-Jun Qian
Targeted Quantification of Protein Phosphorylation and Its Contributions towards Mathematical Modeling of Signaling Pathways. Molecules (Basel, Switzerland) 28 (3) (2023)
Reta Birhanu Kitata, Marija Velickovic, Zhangyang Xu, Rui Zhao, David Scholten, Rosalie K Chu, Daniel J Orton, William B Chrisler, Jeremy V Mathews, Paul D Piehowski, Tao Liu, Richard D Smith, Huiping Liu, Clive H Wasserfall, Chia-Feng Tsai, Tujin Shi
Robust collection and processing for label-free single voxel proteomics. bioRxiv : the preprint server for biology (2023)
Panshak P Dakup, Song Feng, Tujin Shi, Jon M Jacobs, H Steven Wiley, Wei-Jun Qian
Targeted Quantification of Protein Phosphorylation and Its Contributions towards Mathematical Modeling of Signaling Pathways. Molecules (Basel, Switzerland) 28 (3) (2023)
Emma J Schuster, Nurmaa Dashzeveg, Yuzhi Jia, Kibria Golam, Tong Zhang, Andrew Hoffman, Youbin Zhang, Chunlei Zheng, Erika Ramos, Rokana Taftaf, Lamiaa El- Shennawy, David Scholten, Reta B Kitata, Valery Adorno-Cruz, Carolina Reduzzi, Sabina Spahija, Rong Xu, Kalliopi P Siziopikou, Leonidas C Platanias, Ami Shah, William J Gradishar, Massimo Cristofanilli, Chia-Feng Tsai, Tujin Shi, Huiping Liu
Computational ranking-assisted identification of Plexin-B2 in homotypic and heterotypic clustering of circulating tumor cells in breast cancer metastasis. bioRxiv : the preprint server for biology (2023)
Chia-Feng Tsai, Yi-Ting Wang, Chuan-Chih Hsu, Reta Birhanu Kitata, Rosalie K Chu, Marija Velickovic, Rui Zhao, Sarah M Williams, William B Chrisler, Marda L Jorgensen, Ronald J Moore, Ying Zhu, Karin D Rodland, Richard D Smith, Clive H Wasserfall, Tujin Shi, Tao Liu
A streamlined tandem tip-based workflow for sensitive nanoscale phosphoproteomics. Communications biology 6 (1) (2023)
Panshak P Dakup, Song Feng, Tujin Shi, Jon M Jacobs, H Steven Wiley, Wei-Jun Qian
Targeted Quantification of Protein Phosphorylation and Its Contributions towards Mathematical Modeling of Signaling Pathways. Molecules (Basel, Switzerland) 28 (3) (2023)
Komal Abhange, Reta Birhanu Kitata, Jie Zhang, Yi-Ting Wang, Matthew J Gaffrey, Tao Liu, Valerie Gunchick, Valerie M Khaykin, Vaibhav Sahai, Kyle C Cuneo, Neehar D Parikh, Tujin Shi, David M Lubman
In-Depth Proteome Profiling of Small Extracellular Vesicles Isolated from Cancer Cell Lines and Patient Serum. Journal of proteome research 23 (1) (2023)
Jack Humphrey, Erica Brophy, Roman Kosoy, Biao Zeng, Elena Coccia, Daniele Mattei, Ashvin Ravi, Anastasia G Efthymiou, Elisa Navarro, Benjamin Z Muller, Gijsje J L J Snijders, Amanda Allan, Alexandra E Münch, Reta Birhanu Kitata, Steven P Kleopoulos, Stathis Argyriou, Zhiping Shao, Nancy J Francoeur, Chia-Feng Tsai, Marina A Gritsenko, Matthew E Monroe, Vanessa L Paurus, Karl K Weitz, Tujin Shi, Robert Sebra, Tao Liu, Lot D de Witte, Alison Mary Goate, David A Bennett, Vahram Haroutunian, Gabriel E Hoffman, John F Fullard, Panagiotis Roussos, Towfique Raj
Long-read RNA-seq atlas of novel microglia isoforms elucidates disease-associated genetic regulation of splicing. medRxiv : the preprint server for health sciences (2023)
Kendall Martin, Tong Zhang, Tai-Tu Lin, Amber N Habowski, Rui Zhao, Chia-Feng Tsai, William B Chrisler, Ryan L Sontag, Daniel J Orton, Yong-Jie Lu, Karin D Rodland, Bin Yang, Tao Liu, Richard D Smith, Wei-Jun Qian, Marian L Waterman, H Steven Wiley, Tujin Shi
Facile One-Pot Nanoproteomics for Label-Free Proteome Profiling of 50-1000 Mammalian Cells. Journal of proteome research 20 (9) (2021)
Chia-Feng Tsai, Pengfei Zhang, David Scholten, Kendall Martin, Yi-Ting Wang, Rui Zhao, William B Chrisler, Dhwani B Patel, Maowei Dou, Yuzhi Jia, Giancarlo Feliciello, Xia Liu, Ronald J Moore, Kristin E Burnum-Johnson, Miao-Hsia Lin, Chuan-Chih Hsu, Jon M Jacobs, Jacob Kagan, Sudhir Srivastava, Karin D Rodland, H Steven Wiley, Wei-Jun Qian, Richard D Smith, Ying Zhu, Massimo Cristofanilli, Tao Liu, Huiping Liu, Tujin Shi
Surfactant-assisted one-pot sample preparation for label-free single-cell proteomics. Communications biology 4 (1) (2021)
Yi-Ting Wang, Tujin Shi, Sudhir Srivastava, Jacob Kagan, Tao Liu, Karin D Rodland
Proteomic Analysis of Exosomes for Discovery of Protein Biomarkers for Prostate and Bladder Cancer. Cancers 12 (9) (2020)
Zhijing Tan, Jianhui Zhu, Paul M Stemmer, Liangliang Sun, Zhichang Yang, Kendall Schultz, Matthew J Gaffrey, Anthony J Cesnik, Xinpei Yi, Xiaohu Hao, Michael R Shortreed, Tujin Shi, David M Lubman
Comprehensive Detection of Single Amino Acid Variants and Evaluation of Their Deleterious Potential in a PANC-1 Cell Line. Journal of proteome research 19 (4) (2020)
Jacob Kagan, Robert L Moritz, Richard Mazurchuk, Je Hyuk Lee, Peter Vasili Kharchenko, Orit Rozenblatt-Rosen, Eytan Ruppin, Fredrik Edfors, Fiona Ginty, Yury Goltsev, James A Wells, John LaCava, Jessica L Riesterer, Ronald N Germain, Tujin Shi, Mark S Chee, Bogdan A Budnik, John Yates Iii, Brian T Chait, Jeffery R Moffitt, Richard D Smith, Sudhir Srivastava
National Cancer Institute Think-Tank Meeting Report on Proteomic Cartography and Biomarkers at the Single-Cell Level: Interrogation of Premalignant Lesions. Journal of proteome research 19 (5) (2020)
Amber N Habowski, Jessica L Flesher, Jennifer M Bates, Chia-Feng Tsai, Kendall Martin, Rui Zhao, Anand K Ganesan, Robert A Edwards, Tujin Shi, H Steven Wiley, Yongsheng Shi, Klemens J Hertel, Marian L Waterman
Publisher Correction: Transcriptomic and proteomic signatures of stemness and differentiation in the colon crypt. Communications biology 3 (1) (2020)
Amber N Habowski, Jessica L Flesher, Jennifer M Bates, Chia-Feng Tsai, Kendall Martin, Rui Zhao, Anand K Ganesan, Robert A Edwards, Tujin Shi, H Steven Wiley, Yongsheng Shi, Klemens J Hertel, Marian L Waterman
Transcriptomic and proteomic signatures of stemness and differentiation in the colon crypt. Communications biology 3 (1) (2020)
Lian Yi, Chia-Feng Tsai, Ercument Dirice, Adam C Swensen, Jing Chen, Tujin Shi, Marina A Gritsenko, Rosalie K Chu, Paul D Piehowski, Richard D Smith, Karin D Rodland, Mark A Atkinson, Clayton E Mathews, Rohit N Kulkarni, Tao Liu, Wei-Jun Qian
Boosting to Amplify Signal with Isobaric Labeling (BASIL) Strategy for Comprehensive Quantitative Phosphoproteomic Characterization of Small Populations of Cells. Analytical chemistry 91 (9) (2019)
Maowei Dou, Chia-Feng Tsai, Paul D Piehowski, Yang Wang, Thomas L Fillmore, Rui Zhao, Ronald J Moore, Pengfei Zhang, Wei-Jun Qian, Richard D Smith, Tao Liu, Ryan T Kelly, Tujin Shi, Ying Zhu
Automated Nanoflow Two-Dimensional Reversed-Phase Liquid Chromatography System Enables In-Depth Proteome and Phosphoproteome Profiling of Nanoscale Samples. Analytical chemistry 91 (15) (2019)
Chia-Feng Tsai, Jeffrey S Smith, Krzysztof Krajewski, Rui Zhao, Ahmed M Moghieb, Carrie D Nicora, Xinyu Xiong, Ronald J Moore, Tao Liu, Richard D Smith, Jon M Jacobs, Sudarshan Rajagopal, Tujin Shi
Tandem Mass Tag Labeling Facilitates Reversed-Phase Liquid Chromatography-Mass Spectrometry Analysis of Hydrophilic Phosphopeptides. Analytical chemistry 91 (18) (2019)
Maowei Dou, Geremy C Clair, Chia-Feng Tsai, Kerui Xu, William B Chrisler, Ryan L Sontag, Rui Zhao, Ronald J Moore, Tao Liu, Ljiljana Pasa-Tolic, Richard D Smith, Tujin Shi, Joshua N Adkins, Wei-Jun Qian, Ryan T Kelly, Charles Ansong, Ying Zhu
High-Throughput Single Cell Proteomics Enabled by Multiplex Isobaric Labeling in a Nanodroplet Sample Preparation Platform. Analytical chemistry 91 (20) (2019)
Pengfei Zhang, Matthew J Gaffrey, Ying Zhu, William B Chrisler, Thomas L Fillmore, Lian Yi, Carrie D Nicora, Tong Zhang, Huanming Wu, Jon Jacobs, Keqi Tang, Jacob Kagan, Sudhir Srivastava, Karin D Rodland, Wei-Jun Qian, Richard D Smith, Tao Liu, H Steven Wiley, Tujin Shi
Carrier-Assisted Single-Tube Processing Approach for Targeted Proteomics Analysis of Low Numbers of Mammalian Cells. Analytical chemistry 91 (2) (2018)

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Publication Activity (10 Years)

Top Topics

Top Venues

Tujin Shi